TCONS_00010506 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00010506
Unique Name	TCONS_00010506
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1482

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000107:78889..85408+
coding sequence from alignment at sc0000107:78889..85408+

transcript sequence

>TCONS_00010506 ID=TCONS_00010506|Name=TCONS_00010506|organism=Clytia hemisphaerica|type=transcript|length=1482bp
attttgttgaaaagatgGAGACAACAAAAATTTGGTTTAAAGTCTTGAAA
CGTACTTGAGTTATATTTTTCATGGGGTAAAAAAACTCTTCTTCATTTAT
TGATATCAAAGAAGTCTAAGAAATTTACATTATTTCCGTTTGAACCTGTA
TAATGTTGCTTGGTTAGTATAGCTACTCTCTAGTCATATGTAATTCAAAC
CCCCCGGAACGATTGGAtcgagtcaaaactataaaagGTCGACATATAGA
GTAAATCATTTCAATTATAAAAGTCACCTTCTATCAAACCGATAACAAAG
AGTTTAGCAAAATGAAGCTGCTGGTTTTGGCAACATTTTGCGTTGCTTTT
GCATTTGCTACAGATGTTGAGGAGCATTTAGAGAAATTTGGATTTATGaa
taaatttcaatttgatGGAAGTTCAATCAAACATGCACTTGAGAAGTATC
AAAAAGCTTTCAACCTTCCAGTGTCTGGCGTCGCCGATGAAGCCACCATG
AAACTAATGGCAACACCACGTTGTGGTCGCCCTGACAACGATGCAAACAA
TCTTTTTGCTGACACAGCATGGAGAAAGAAGGCTTTATCTTATTACTACA
ACAATTATACACCAGACTTGAGTCGTTCAGATGTCCGTTCTTTAACAGAG
AAAGCTTTCAAATTCTGGGCTGATGTAGCACCACTTCATTTTACAGAAAA
AAGCGGCGGAGATATTGTTGTCTCTTTCGGATCACGTGGTCACCACGATG
GAAAAAGACAATGTGGATTTCCTTTTGATGGGCGTGGTGGTGTTTTAGCG
CATGCGTTCTTCCCTCCTGACGGTCGTCTTCATTTTGACGAAGATGAAGG
ATATACTGCACGATCATCAAGTGGAACAAACTATCTTTGGGTAGCTACTC
ACGAGTTAGGTCATATCCTTGGATTGGAGCACGACACTAACAACCGTAAC
GCTGTTATGTATCCCTACTACCAACCATATCGTGCCAACATGCAACTTCA
TAGCAATGATATTGCTCGTATCCAACGCCTTTATGGTAGAGGGCAAGGAA
GCGTCAACGGAAATGGTGGATCAGGAGGGTCAGGAGGGTCTGGAGGCTCC
GGTGGATCTGGTGGTTCTGGAGATTGTAAAGATCTTCAagcatcttcttt
ttgttcATCCAAACGGGATGGATGCTCCAAATGGGGTAACGACTGGAAAC
GTTATATGGAGAAGAACTGCAAGAAAACATGTGGCTTCTGCAGTGGTGGT
GGAAGTGGTGGAAGTGGCGATTGTAAAGACACAGTAACTGATTGCCAAAA
AAATATCCGAGGATGCAGCAGTTGGGGACAAGCCTGGATAGACTACAtga
agaaaaattgtaaaaaatcatGCAATTTCTGTTAAGAATTTATTTTAtat
ttgttgaaACAATACATCATcatcaaaattaattaaaaagacAATAGTTT
TAATATCTATTTTCCTATGTAGACCTATACAT

Run BLAST on NCBI

protein sequence of TCONS_00010506-protein

>TCONS_00010506-protein ID=TCONS_00010506-protein|Name=TCONS_00010506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MKLLVLATFCVAFAFATDVEEHLEKFGFMNKFQFDGSSIKHALEKYQKAF
NLPVSGVADEATMKLMATPRCGRPDNDANNLFADTAWRKKALSYYYNNYT
PDLSRSDVRSLTEKAFKFWADVAPLHFTEKSGGDIVVSFGSRGHHDGKRQ
CGFPFDGRGGVLAHAFFPPDGRLHFDEDEGYTARSSSGTNYLWVATHELG
HILGLEHDTNNRNAVMYPYYQPYRANMQLHSNDIARIQRLYGRGQGSVNG
NGGSGGSGGSGGSGGSGGSGDCKDLQASSFCSSKRDGCSKWGNDWKRYME
KNCKKTCGFCSGGGSGGSGDCKDTVTDCQKNIRGCSSWGQAWIDYMKKNC
KKSCNFC

Run BLAST on NCBI

transcript from alignment at sc0000107:78889..85408+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00010506 ID=TCONS_00010506|Name=TCONS_00010506|organism=Clytia hemisphaerica|type=transcript|length=6520bp|location=Sequence derived from alignment at sc0000107:78889..85408+ (Clytia hemisphaerica)
attttgttgaaaagatgGAGACAACAAAAATTTGGTTTAAAGTCTTGAAA
CGTACTTGAGTTATATTTTTCATGGGGTAAAAAAACTCTTCTTCATTTAT
TGATATCAAAGAAGTCTAAGAAATTTACATTATTTCCGTTTGAACCTGTA
TAATGTTGCTTGGTTAGTATAGCTACTCTCTAGTCATATGTAATTCAAAC
CCCCCGGAACGATTGGAtcgagtcaaaactataaaagGTCGACATATAGA
GTAAATCATTTCAATTATAAAAGTCACCTTCTATCAAACCGATAACAAAG
AGTTTAGCAAAATGAAGCTGCTGGTTTTGGCAACATTTTGCGTTGCTTTT
GCATTTGCTACAGATGTTGAGGTAAATTGAATTGTTGTCATTCTGGATAG
CGCTAAGCGTTCCCACTAAAGAGTAGAACTTGTGCCCTGAAGGTTAGGGT
TCATTTCATATTATATAATCAATTCTCCCTTAGTACATATAAATCGAAAA
TATAATTTGCTCGCACAAATATAATCGAAGGTAGTAATGATCGTTTCAAA
TTCATGAAGGAGACTTTTGTTCAATTCAATAcgattcgaattatagataT
TCGCGATTACAGAGAATTCATCCTCATTGTTAAATATCATTGCCTTATCA
GCAGAAAACATTCCGAATTCTATCAGACCAGCCACCAAAATTTTCCTGAA
ATCAGATCTTTGTACTTTAAATTCTTTTTAGGAGCATTTAGAGAAATTTG
GATTTATGaataaatttcaatttgatGGAAGTTCAATCAAACATGCACTT
GAGAAGTATCAAAAAGCTTTCAACCTTCCAGTGTCTGGTAAGAATTAGTA
CTCCGACCTCACTGCTCAAAAGATTTAGATCATGTTCAGAGGTTATAACA
ATTCTGTTCCGCTCCGAAATAAAATGAAGCCTTTCTATAGAAACGGAACG
GTCACGTGCGAACATAGTCTTAGCTTCTCATTATCAGGATTCACCGAAAC
AATGAGGGTTCTTAGTATCCTGAACAGAACTTAATAATGCGAGATTCGTT
AACAGGCATAACTGAAAGTCGATaaataaacaagaaaaatgaaatacaaT
GAAGCAATGCATAATTAAAACTCCCAGTACTTAGACAAAAATGGGTACTG
GGTATGTGCATGTCATGTGAGtcgttttttcaattttaaaagtcTCACAC
TGTCGGACaaatcagaaatttttaaaCCTAAGGGTCGGTAAATtgcaaaa
aagtctctctaataccctgagtatcagaggttaagttttcaaagaatata
ttaacctctgaagaccaataatagaaattttatcgcacatgtgtcaatct
aatcactgtagaaagaatcaaagatgaagagcaaatattaccttataaat
gtctagcagactgtatcatcagtatgcagtttactatttacgaattcacC
AGAAACCTctaagtgtaattgaagtgagtttctttcgaaagaaatctttt
acatgatccccaaatgtataacagtaattactaaactattaattatggaa
atgtcactttaattgaattgaaataatagacagactttatgttatgattc
tctatcagatcactgactctttttaaaaagcattgatgatattttttagt
tgtgttttcaacgacgggaatcaaaatataaactttgaacttcatccaag
atcttggatggtcgtcatagttacttttgtcttcgttgattgcgcactga
atagaatctcgattcgtcggcacagcgtcgatatatgatttcgacttgtg
cttttcacggtatctctctaagggtacgacttttttcaaaagtggaagaa
aatgtttcaaaaaagtctctctaagggtcaccttttcagcaaaaattagt
CTCTATAAGAATCCCTCAACCCTAATACCCCCTGGGTACAGAATCGACAA
ATATGAAAATACTTTTATCTAGGCGTCGCCGATGAAGCCACCATGAAACT
AATGGCAACACCACGTTGTGGTCGCCCTGACAACGATGCAAACAATCTTT
TTGCTGACACAGCATGGAGAAAGAAGGCTTTATCTTATTACTACAACAAT
TATACACCAGACTTGAGTCGTTCAGATGTCCGTTCTTTAACAGAGAAAGC
TTTCAAATTCTGGGCTGATGTAGCACCACTTCATTTTACAGAAAAAAGCG
GCGGAGATATTGTTGTCTCGTAAGTTTATGATTGATCCCTTAAGACATTC
AAGTATGATTGGAATTGGCAAAAAAATAGGCAACTACTCCATTTTAAACC
TTCATCTTCATTTCATTGTTCAGTTTCTGCCCTTATGTCAGCTCATTTGT
CCATCATGGTAGTTTTTTTTGCGTCTTTGAAAAATCCCAAGAAGAAAATC
TGTGACGTTCACATCTGCTTATTTACGTAACATTCAGATAACgctggaaa
aaaatcaaaacatactCTTTATTCTTTACTGGGAAATATCTTATGCACTG
GAAATCATCATAATTCATGaaataatgttttatacggaagcaatGACATG
GGTATCATGAATTTAACACGTTCAACATTTGTGATCACATTCAACATTTG
TGACCACATTCAACATTTTGTGAccacattcaatatttttgtttacattt
catAGTTTCGGATCACGTGGTCACCACGATGGAAAAAGACAATGTGGATT
TCCTTTTGATGGGCGTGGTGGTGTTTTAGCGCATGCGTTCTTCCCTCCTG
ACGGTCGTCTTCATTTTGACGAAGATGAAGGATATACTGCACGATCATCA
AGTGGTAAGTGACCGATAGACCTCTATagaccctggaccaagttatatcc
gccatctttgatcggagacTTTTTAAAAAAGGTGGTGTGTCTGCAAAGAA
TCCAATGTAGTGTTAAAGTTTAGTCTAACGACAAACGGTACTCAAAAGTA
GGATCTTCTCCAATCAATTATTTTGCTTGGTCAGGATTTGGTCCATATCC
CCggaggggggcactcgattttgaaaacgaccgtatgTTTGGCcgaaaat
caggtctctaaaatcggacccttacagtgcaggaaaaatttggctgaaag
tCGACCCTTAttatagtgcaatttttcgaaattgtttgcccttttcaggg
caaaatattttgaaatttctcaaattttacctcaaaatttggtattttct
caaaatttacaCCCTTAccgtgcactttccaaagtgcaaaaaacctaccc
ttaagggccgtaCGTCCGGTACGTCACTTAACttgaggcccccccccccc
cgggttccaTATTCAGCTCAGGTCATGGAAACttagaaaagtaatatttg
AAGACTCGTGGGattaattgttttaaaaagaggcAGTCGTTGCAATCAAA
ATATCACGGAAAAACATAACTGAATCTCATTCGACAAAGGGTACTGTATA
CAATCATCAATGAGGAGTATAAAGATAGAAATAATTCGCTTGATTAGAAA
AGACAGAGAGTTTAGACAAAGTTGGTTTTTAGCCAATGACAAACTTACCC
TATACCATTAATCTCCGCGTCCTTTAATCACTGTGAATATCTTTACTgat
aatatcaaaataataccgacaaacttttgtaaaaaaattactAAAGCTAC
GATGGCGTGATCTTTTTACTTCGATAAAGACGAAATACAGAACAGTTGTA
TAAGTCAGAAAAAGTAATCGAATTATTACTAACTTTCAACTATTCTTTTA
GGAACAAACTATCTTTGGGTAGCTACTCACGAGTTAGGTCATATCCTTGG
ATTGGAGCACGACACTAACAACCGTAACGCTGTTATGTATCCCTACTACC
AACCATATCGTGCCAACATGCAACTTCATAGCAATGATATTGCTCGTATC
CAACGCCTTTATGGTAGAGGGCAAGGAAGCGTCAACGGAAATGGTGGATC
AGGAGGGTCAGGAGGGTCTGGAGGCTCCGGTGGATCTGGTGGTTCTGGAG
GTTAGTCTGTTTTCTATTTTTACTAAGTAGGGCTAATCGAAAAAACAAAC
TTTGAGGTTTTTCGATTATAAGAACACCCCTGTGACAGAACCGGTTGGAA
CCCCATCCCGCCCCTAGCTTCCGTCCTCGGTGGGAAATCACGTCACAATT
TCAAAGTTAATCTCCCAGTgaaatgactttgatttcatccctatttgaaa
ttcaatgaaagaattgcacttcaaaaccatccgaACTAGTTTCTTTGACC
TGGGAGCAATATAATTTTTGTACCCATTGCGATTTCGATATAGATGTTAT
ACCCAACTGGTGGAAGATAGGATGGTGGACAATAAACAAAGTACCAGTTA
TTGGAAGAAGGACCCAGCGTTGATACACGTGCGATGCGTGCTCTTGGCTT
AAGTAATATTAAGTGAAGAAAAAACCTTATCAGCTATCATCGGAGCAGAA
TCAcaaaaatccaaagaaaacccatTCTCACAAATCCGGTGGGAGAAATT
GaacaaaatatcgtccccaatGGAAACTTATACTCCAACTTTGTTCCCCA
GTTAATATAGTCGAATGGAAAATTCTCGCTGCAATATATTGGGCTATTTT
CCATCCCTATTTTCCATTTTATATGACTTGAGACCATAATTTAACTTAAA
TCCTCAGCCATAAAACACATAGGAATATTATCCATATCGAGTTTTCATTC
GGGCTTAATTTCGGATATCTTACCGTTTTTGAGAATTGGAAGTTCGGACG
AGATTTGCAATTTCAGCATTTCTACTTTATTTCATTTGATATTCCAATTT
TGGAAGGATTCAGTTGCTTCCAGCAGGATATATTCTCAGCCCTCTAGGAA
CAATGTCCTTAGAAATCCTGAGAACCTAAGGTcctgagttttaagtctca
tgttaaaactcagactTAAGACTACACGCTCAGGAAGTAAATGAGAGAAC
TCATTTGTTGCGTTTAAAACCTTAGGGGATTTcccctttttttcaaatat
catgGACTTTGTTGCGGGTTAGTAAGAACGGGATGTCCAATTGGAAATCA
AAGCACATTATTTTGCTTCGAAATGGTATGGAATGagaatgatttcaaaa
tttcactttagaataaaatttgttgacaaaacaaaaaaggctCAATTCAA
TATAAAGCTTTACTTTAAATCTATTTCAATTTCAGATTGTAAAGATCTTC
AagcatcttctttttgttcATCCAAACGGGATGGATGCTCCAAATGGGGT
AACGACTGGAAACGTTATATGGAGAAGAACTGCAAGAAAACATGTGGCTT
CTGCAGTGGTGGTGGAAGTGGTGGAAGTGGCGGTAAGTGTGGTTATTGAA
TTCATGTTTGTGTATTCTATTGTATAGCTATCTAAATACATATCAATTTT
TGGAGACTTTCCCTCCCAAACTCTACAACATTCCATGCAAGCCCTCTATA
AAGATACAATGTAAGTACGAAATATCAATAGTTGTCATCCTTAGCTGCCA
TCTGGACGGTCCGATGTCGTCCGTTTAGAGAGTCAGTGAACGCGAGAAAA
TATATAAGCGCGAAGTCAGGGCGTCAGAGCGGgaaaaaaagtggcggtag
agttttggaacctCCGCCACTGTTTACTCCGCCCCAAACTNTTAGAGGGT
CAGTGAACGCGGGAAAATATATAAGCGCGAAGTCAGGGCGTCAGAGCGGG
AAAAAAaatggcggtagagttttggaacctCCGCCACTGTTTGCTCCGCC
CCAAACTAAACTTGtcttcaaatttatcccgcctcctgaattattcccat
gtgtagacgataggatcctctaggggggggggcactcgttctgaaaacga
ccatacgttcagCCCAAAAATTCACTTTCAAACCGAACCTTTACAATGCA
GAAATAAGCTACGAAGTTTGACACCCTTATAGTGCGAAAACCGACAAAAA
GTACACCGTCATAGTGCATAACTCTCTCCACCAGACCTTTCTAATGGAAC
ACCTccctttcaaaaatcttttaagacACACAGAGATATACatattatat
acatatatacTTATGTACAAGAGCGCGAGCATGGTGCTAGTGAATAATTT
AGtttaaaaatcgacccttaaGTGCCGTACGTCTGGTAAGTCTTTTACCT
TGAGTGTCCCCCTCTGGGCCCGACATTGATACCCACCGTGTCTCTaggat
tcacttggcaagttaTTCCTACTCCGGTAGgcattcggagggctcatatc
atcTCTATTTTATCTCTATTTTGTAACTTTGTAAATGATTTATATTTTTC
GTCTCAGATTGTAAAGACACAGTAACTGATTGCCAAAAAAATATCCGAGG
ATGCAGCAGTTGGGGACAAGCCTGGATAGACTACAtgaagaaaaattgta
aaaaatcatGCAATTTCTGTTAAGAATTTATTTTAtatttgttgaaACAA
TACATCATcatcaaaattaattaaaaagacAATAGTTTTAATATCTATTT
TCCTATGTAGACCTATACAT

Coding sequence (CDS) from alignment at sc0000107:78889..85408+

>TCONS_00010506 ID=TCONS_00010506|Name=TCONS_00010506|organism=Clytia hemisphaerica|type=CDS|length=7518bp|location=Sequence derived from alignment at sc0000107:78889..85408+ (Clytia hemisphaerica)
ATGAAGCTGCTGGTTTTGGCAACATTTTGCGTTGCTTTTGCATTTGCTAC
AGATGTTGAGGAGCATTTAGAGAAATTTGGATTTATGaataaatttcaat
ttgatGGAAGTTCAATCAAACATGCACTTGAGAAGTATCAAAAAGCTTTC
AACCTTCCAGTGTCTGGCGTCGCCGATGAAGCCACCATGAAACTAATGGC
AACACCACGTTGTGGTCGCCCTGACAACGATGCAAACAATCTTTTTGCTG
ACACAGCATGGAGAAAGAAGGCTTTATCTTATTACTACAACAATTATACA
CCAGACTTGAGTCGTTCAGATGTCCGTTCTTTAACAGAGAAAGCTTTCAA
ATTCTGGGCTGATGTAGCACCACTTCATTTTACAGAAAAAAGCGGCGGAG
ATATTGTTGTCTCTTTCGGATCACGTGGTCACCACGATGGAAAAAGACAA
TGTGGATTTCCTTTTGATGGGCGTGGTGGTGTTTTAGCGCATGCGTTCTT
CCCTCCTGACGGTCGTCTTCATTTTGACGAAGATGAAGGATATACTGCAC
GATCATCAAGTGGAACAAACTATCTTTGGGTAGCTACTCACGAGTTAGGT
CATATCCTTGGATTGGAGCACGACACTAACAACCGTAACGCTGTTATGTA
TCCCTACTACCAACCATATCGTGCCAACATGCAACTTCATAGCAATGATA
TTGCTCGTATCCAACGCCTTTATGGTAGAGGGCAAGGAAGCGTCAACGGA
AATGGTGGATCAGGAGGGTCAGGAGGGTCTGGAGGCTCCGGTGGATCTGG
TGGTTCTGGAGATTGTAAAGATCTTCAagcatcttctttttgttcATCCA
AACGGGATGGATGCTCCAAATGGGGTAACGACTGGAAACGTTATATGGAG
AAGAACTGCAAGAAAACATGTGGCTTCTGCAGTGGTGGTGGAAGTGGTGG
AAGTGGCGATTGTAAAGACACAGTAACTGATTGCCAAAAAAATATCCGAG
GATGCAGCAGTTGGGGACAAGCCTGGATAGACTACAtgaagaaaaattgt
aaaaaatcatGCAATTTCTGTTAAATGAAGCTGCTGGTTTTGGCAACATT
TTGCGTTGCTTTTGCATTTGCTACAGATGTTGAGGAGCATTTAGAGAAAT
TTGGATTTATGaataaatttcaatttgatGGAAGTTCAATCAAACATGCA
CTTGAGAAGTATCAAAAAGCTTTCAACCTTCCAGTGTCTGGCGTCGCCGA
TGAAGCCACCATGAAACTAATGGCAACACCACGTTGTGGTCGCCCTGACA
ACGATGCAAACAATCTTTTTGCTGACACAGCATGGAGAAAGAAGGCTTTA
TCTTATTACTACAACAATTATACACCAGACTTGAGTCGTTCAGATGTCCG
TTCTTTAACAGAGAAAGCTTTCAAATTCTGGGCTGATGTAGCACCACTTC
ATTTTACAGAAAAAAGCGGCGGAGATATTGTTGTCTCTTTCGGATCACGT
GGTCACCACGATGGAAAAAGACAATGTGGATTTCCTTTTGATGGGCGTGG
TGGTGTTTTAGCGCATGCGTTCTTCCCTCCTGACGGTCGTCTTCATTTTG
ACGAAGATGAAGGATATACTGCACGATCATCAAGTGGAACAAACTATCTT
TGGGTAGCTACTCACGAGTTAGGTCATATCCTTGGATTGGAGCACGACAC
TAACAACCGTAACGCTGTTATGTATCCCTACTACCAACCATATCGTGCCA
ACATGCAACTTCATAGCAATGATATTGCTCGTATCCAACGCCTTTATGGT
AGAGGGCAAGGAAGCGTCAACGGAAATGGTGGATCAGGAGGGTCAGGAGG
GTCTGGAGGCTCCGGTGGATCTGGTGGTTCTGGAGATTGTAAAGATCTTC
AagcatcttctttttgttcATCCAAACGGGATGGATGCTCCAAATGGGGT
AACGACTGGAAACGTTATATGGAGAAGAACTGCAAGAAAACATGTGGCTT
CTGCAGTGGTGGTGGAAGTGGTGGAAGTGGCGATTGTAAAGACACAGTAA
CTGATTGCCAAAAAAATATCCGAGGATGCAGCAGTTGGGGACAAGCCTGG
ATAGACTACAtgaagaaaaattgtaaaaaatcatGCAATTTCTGTTAAAT
GAAGCTGCTGGTTTTGGCAACATTTTGCGTTGCTTTTGCATTTGCTACAG
ATGTTGAGGAGCATTTAGAGAAATTTGGATTTATGaataaatttcaattt
gatGGAAGTTCAATCAAACATGCACTTGAGAAGTATCAAAAAGCTTTCAA
CCTTCCAGTGTCTGGCGTCGCCGATGAAGCCACCATGAAACTAATGGCAA
CACCACGTTGTGGTCGCCCTGACAACGATGCAAACAATCTTTTTGCTGAC
ACAGCATGGAGAAAGAAGGCTTTATCTTATTACTACAACAATTATACACC
AGACTTGAGTCGTTCAGATGTCCGTTCTTTAACAGAGAAAGCTTTCAAAT
TCTGGGCTGATGTAGCACCACTTCATTTTACAGAAAAAAGCGGCGGAGAT
ATTGTTGTCTCTTTCGGATCACGTGGTCACCACGATGGAAAAAGACAATG
TGGATTTCCTTTTGATGGGCGTGGTGGTGTTTTAGCGCATGCGTTCTTCC
CTCCTGACGGTCGTCTTCATTTTGACGAAGATGAAGGATATACTGCACGA
TCATCAAGTGGAACAAACTATCTTTGGGTAGCTACTCACGAGTTAGGTCA
TATCCTTGGATTGGAGCACGACACTAACAACCGTAACGCTGTTATGTATC
CCTACTACCAACCATATCGTGCCAACATGCAACTTCATAGCAATGATATT
GCTCGTATCCAACGCCTTTATGGTAGAGGGCAAGGAAGCGTCAACGGAAA
TGGTGGATCAGGAGGGTCAGGAGGGTCTGGAGGCTCCGGTGGATCTGGTG
GTTCTGGAGATTGTAAAGATCTTCAagcatcttctttttgttcATCCAAA
CGGGATGGATGCTCCAAATGGGGTAACGACTGGAAACGTTATATGGAGAA
GAACTGCAAGAAAACATGTGGCTTCTGCAGTGGTGGTGGAAGTGGTGGAA
GTGGCGATTGTAAAGACACAGTAACTGATTGCCAAAAAAATATCCGAGGA
TGCAGCAGTTGGGGACAAGCCTGGATAGACTACAtgaagaaaaattgtaa
aaaatcatGCAATTTCTGTTAAATGAAGCTGCTGGTTTTGGCAACATTTT
GCGTTGCTTTTGCATTTGCTACAGATGTTGAGGAGCATTTAGAGAAATTT
GGATTTATGaataaatttcaatttgatGGAAGTTCAATCAAACATGCACT
TGAGAAGTATCAAAAAGCTTTCAACCTTCCAGTGTCTGGCGTCGCCGATG
AAGCCACCATGAAACTAATGGCAACACCACGTTGTGGTCGCCCTGACAAC
GATGCAAACAATCTTTTTGCTGACACAGCATGGAGAAAGAAGGCTTTATC
TTATTACTACAACAATTATACACCAGACTTGAGTCGTTCAGATGTCCGTT
CTTTAACAGAGAAAGCTTTCAAATTCTGGGCTGATGTAGCACCACTTCAT
TTTACAGAAAAAAGCGGCGGAGATATTGTTGTCTCTTTCGGATCACGTGG
TCACCACGATGGAAAAAGACAATGTGGATTTCCTTTTGATGGGCGTGGTG
GTGTTTTAGCGCATGCGTTCTTCCCTCCTGACGGTCGTCTTCATTTTGAC
GAAGATGAAGGATATACTGCACGATCATCAAGTGGAACAAACTATCTTTG
GGTAGCTACTCACGAGTTAGGTCATATCCTTGGATTGGAGCACGACACTA
ACAACCGTAACGCTGTTATGTATCCCTACTACCAACCATATCGTGCCAAC
ATGCAACTTCATAGCAATGATATTGCTCGTATCCAACGCCTTTATGGTAG
AGGGCAAGGAAGCGTCAACGGAAATGGTGGATCAGGAGGGTCAGGAGGGT
CTGGAGGCTCCGGTGGATCTGGTGGTTCTGGAGATTGTAAAGATCTTCAa
gcatcttctttttgttcATCCAAACGGGATGGATGCTCCAAATGGGGTAA
CGACTGGAAACGTTATATGGAGAAGAACTGCAAGAAAACATGTGGCTTCT
GCAGTGGTGGTGGAAGTGGTGGAAGTGGCGATTGTAAAGACACAGTAACT
GATTGCCAAAAAAATATCCGAGGATGCAGCAGTTGGGGACAAGCCTGGAT
AGACTACAtgaagaaaaattgtaaaaaatcatGCAATTTCTGTTAAATGA
AGCTGCTGGTTTTGGCAACATTTTGCGTTGCTTTTGCATTTGCTACAGAT
GTTGAGGAGCATTTAGAGAAATTTGGATTTATGaataaatttcaatttga
tGGAAGTTCAATCAAACATGCACTTGAGAAGTATCAAAAAGCTTTCAACC
TTCCAGTGTCTGGCGTCGCCGATGAAGCCACCATGAAACTAATGGCAACA
CCACGTTGTGGTCGCCCTGACAACGATGCAAACAATCTTTTTGCTGACAC
AGCATGGAGAAAGAAGGCTTTATCTTATTACTACAACAATTATACACCAG
ACTTGAGTCGTTCAGATGTCCGTTCTTTAACAGAGAAAGCTTTCAAATTC
TGGGCTGATGTAGCACCACTTCATTTTACAGAAAAAAGCGGCGGAGATAT
TGTTGTCTCTTTCGGATCACGTGGTCACCACGATGGAAAAAGACAATGTG
GATTTCCTTTTGATGGGCGTGGTGGTGTTTTAGCGCATGCGTTCTTCCCT
CCTGACGGTCGTCTTCATTTTGACGAAGATGAAGGATATACTGCACGATC
ATCAAGTGGAACAAACTATCTTTGGGTAGCTACTCACGAGTTAGGTCATA
TCCTTGGATTGGAGCACGACACTAACAACCGTAACGCTGTTATGTATCCC
TACTACCAACCATATCGTGCCAACATGCAACTTCATAGCAATGATATTGC
TCGTATCCAACGCCTTTATGGTAGAGGGCAAGGAAGCGTCAACGGAAATG
GTGGATCAGGAGGGTCAGGAGGGTCTGGAGGCTCCGGTGGATCTGGTGGT
TCTGGAGATTGTAAAGATCTTCAagcatcttctttttgttcATCCAAACG
GGATGGATGCTCCAAATGGGGTAACGACTGGAAACGTTATATGGAGAAGA
ACTGCAAGAAAACATGTGGCTTCTGCAGTGGTGGTGGAAGTGGTGGAAGT
GGCGATTGTAAAGACACAGTAACTGATTGCCAAAAAAATATCCGAGGATG
CAGCAGTTGGGGACAAGCCTGGATAGACTACAtgaagaaaaattgtaaaa
aatcatGCAATTTCTGTTAAATGAAGCTGCTGGTTTTGGCAACATTTTGC
GTTGCTTTTGCATTTGCTACAGATGTTGAGGAGCATTTAGAGAAATTTGG
ATTTATGaataaatttcaatttgatGGAAGTTCAATCAAACATGCACTTG
AGAAGTATCAAAAAGCTTTCAACCTTCCAGTGTCTGGCGTCGCCGATGAA
GCCACCATGAAACTAATGGCAACACCACGTTGTGGTCGCCCTGACAACGA
TGCAAACAATCTTTTTGCTGACACAGCATGGAGAAAGAAGGCTTTATCTT
ATTACTACAACAATTATACACCAGACTTGAGTCGTTCAGATGTCCGTTCT
TTAACAGAGAAAGCTTTCAAATTCTGGGCTGATGTAGCACCACTTCATTT
TACAGAAAAAAGCGGCGGAGATATTGTTGTCTCTTTCGGATCACGTGGTC
ACCACGATGGAAAAAGACAATGTGGATTTCCTTTTGATGGGCGTGGTGGT
GTTTTAGCGCATGCGTTCTTCCCTCCTGACGGTCGTCTTCATTTTGACGA
AGATGAAGGATATACTGCACGATCATCAAGTGGAACAAACTATCTTTGGG
TAGCTACTCACGAGTTAGGTCATATCCTTGGATTGGAGCACGACACTAAC
AACCGTAACGCTGTTATGTATCCCTACTACCAACCATATCGTGCCAACAT
GCAACTTCATAGCAATGATATTGCTCGTATCCAACGCCTTTATGGTAGAG
GGCAAGGAAGCGTCAACGGAAATGGTGGATCAGGAGGGTCAGGAGGGTCT
GGAGGCTCCGGTGGATCTGGTGGTTCTGGAGATTGTAAAGATCTTCAagc
atcttctttttgttcATCCAAACGGGATGGATGCTCCAAATGGGGTAACG
ACTGGAAACGTTATATGGAGAAGAACTGCAAGAAAACATGTGGCTTCTGC
AGTGGTGGTGGAAGTGGTGGAAGTGGCGATTGTAAAGACACAGTAACTGA
TTGCCAAAAAAATATCCGAGGATGCAGCAGTTGGGGACAAGCCTGGATAG
ACTACAtgaagaaaaattgtaaaaaatcatGCAATTTCTGTTAAATGAAG
CTGCTGGTTTTGGCAACATTTTGCGTTGCTTTTGCATTTGCTACAGATGT
TGAGGAGCATTTAGAGAAATTTGGATTTATGaataaatttcaatttgatG
GAAGTTCAATCAAACATGCACTTGAGAAGTATCAAAAAGCTTTCAACCTT
CCAGTGTCTGGCGTCGCCGATGAAGCCACCATGAAACTAATGGCAACACC
ACGTTGTGGTCGCCCTGACAACGATGCAAACAATCTTTTTGCTGACACAG
CATGGAGAAAGAAGGCTTTATCTTATTACTACAACAATTATACACCAGAC
TTGAGTCGTTCAGATGTCCGTTCTTTAACAGAGAAAGCTTTCAAATTCTG
GGCTGATGTAGCACCACTTCATTTTACAGAAAAAAGCGGCGGAGATATTG
TTGTCTCTTTCGGATCACGTGGTCACCACGATGGAAAAAGACAATGTGGA
TTTCCTTTTGATGGGCGTGGTGGTGTTTTAGCGCATGCGTTCTTCCCTCC
TGACGGTCGTCTTCATTTTGACGAAGATGAAGGATATACTGCACGATCAT
CAAGTGGAACAAACTATCTTTGGGTAGCTACTCACGAGTTAGGTCATATC
CTTGGATTGGAGCACGACACTAACAACCGTAACGCTGTTATGTATCCCTA
CTACCAACCATATCGTGCCAACATGCAACTTCATAGCAATGATATTGCTC
GTATCCAACGCCTTTATGGTAGAGGGCAAGGAAGCGTCAACGGAAATGGT
GGATCAGGAGGGTCAGGAGGGTCTGGAGGCTCCGGTGGATCTGGTGGTTC
TGGAGATTGTAAAGATCTTCAagcatcttctttttgttcATCCAAACGGG
ATGGATGCTCCAAATGGGGTAACGACTGGAAACGTTATATGGAGAAGAAC
TGCAAGAAAACATGTGGCTTCTGCAGTGGTGGTGGAAGTGGTGGAAGTGG
CGATTGTAAAGACACAGTAACTGATTGCCAAAAAAATATCCGAGGATGCA
GCAGTTGGGGACAAGCCTGGATAGACTACAtgaagaaaaattgtaaaaaa
tcatGCAATTTCTGTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005894	XLOC_005894	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00010506-protein	TCONS_00010506-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000107	supercontig	sc0000107:78889..85408 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0315552	0	0.864419	0.801871	0.931593	0.972779	0.352275	0.34908	0.0282354	0.556826	57.4031	53.454	17.4077	46.0235	23.7458	32.0156	557.676	615.871	134.136	138.555	404.576	420.285	231.867	275.7	0.076429	0	0	0.504251

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR021190	Pept_M10A
IPR006026	Peptidase_Metallo
IPR003582	ShKT_dom
IPR001818	Pept_M10_metallopeptidase
IPR002477	Peptidoglycan-bd-like
IPR024079	MetalloPept_cat_dom
IPR033739	M10A_MMP

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0004222	metalloendopeptidase activity
GO:0008237	metallopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Cellular Component**
Term	Definition
GO:0031012	extracellular matrix

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0031012	extracellular matrix
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0008270	zinc ion binding

Blast

[Close]

BLAST of TCONS_00010506 vs. Swiss-Prot (Human)
Match: MMP7 (Matrilysin OS=Homo sapiens GN=MMP7 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.680e-42
Identity = 90/229 (39.30%), Postives = 129/229 (56.33%), Query Frame = 3

Query:  369 EEHLEKFGFMNKFQFDGSSIKHALEKYQKAFNLPVSGVADEATMKLMATPRCGRPDNDANNLFADTA-WRKKALSYYYNNYTPDLSRSDVRSLTEKAFKFWADVAPLHFTEKSGG--DIVVSFGSRGHHDGKRQCGFPFDGRGGVLAHAFFPPDGR---LHFDEDEGYTARSSSGTNYLWVATHELGHILGLEHDTNNRNAVMYPYY-QPYRANMQLHSNDIARIQRLY 1034
            +++L++F   +    + +S++  L++ QK F LP++G+ +   +++M  PRCG PD    +LF ++  W  K ++Y   +YT DL    V  L  KA   W    PLHF +   G  DI++ F    H D      +PFDG G  LAHAF P  G     HFDEDE +T  SS G N+L+ ATHELGH LG+ H +++ NAVMYP Y      N +L  +DI  IQ+LY
Sbjct:   36 QDYLKRFYLYDSETKNANSLEAKLKEMQKFFGLPITGMLNSRVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDS-----YPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGH-SSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 258

The following BLAST results are available for this feature:

BLAST of TCONS_00010506 vs. Swiss-Prot (Human)

BLAST of TCONS_00010506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MMP7	1.680e-42	39.30	Matrilysin OS=Homo sapiens GN=MMP7 PE=1 SV=1	[more]

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TCONS_00010506 (transcript) - C. hemisphaerica