TCONS_00010504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010504
Unique NameTCONS_00010504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010504 ID=TCONS_00010504|Name=TCONS_00010504|organism=Clytia hemisphaerica|type=transcript|length=723bp
GGATTGATTAAAATGAATGTTCTTTTGAATGGCtaataaagtatgtgata
tCTTTCGCCAGAAATTCGATCCACAGAGAAAATCTCACTTCAACTATTTG
GTCTGTcggaaaaaaaaagttttaccgTTCTGCAATTAGCAGGACCAGGT
TCTCCTTTCttccttttcaaattttcttccatTCTGTTCTTTATTTTGAG
AACCATTTTCTTTTGTCACCGACACATTTgacttttctcaatttttcctT
CTTCATTATAATAGCAGTTCTTTAGCCTAAATGACAGTTCCTTCCCGCCG
ATTTCCTCCAATGAGAAAGGAATCGGTGAGTTTCCTTGCTTTTGTTTATT
CTTTTACCATCctttcattttttacttcaatgTTTCCGtgtcttttttca
atttttctagtTCTTGAGTCACCATTTTCTTCGTCTTTTTTCCACCTTTG
ATAATCCTTTAATCCAGTAACTTTTTGTCCACCGTATTCACTGTAATCTA
GCTATTCATGTTCTTATGGAAAGTCAAACACAAATCCCGTTTCTTGGAAA
AACCGAACGATTATTATACTATCTGCGCCACTgtcagatttttttctttt
catctaaaCCAAATAATCTTCTCTGTACATCCcgcaattttcaattcaat
atgTTTTCTCGCTTCGAAAATGTTCAGACTGATACTTTCACCAAAGCGCT
ACCCTGTCCCTCCATAATGTCCT
Run BLAST on NCBI

transcript from alignment at sc0000106:537483..538205

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010504 ID=TCONS_00010504|Name=TCONS_00010504|organism=Clytia hemisphaerica|type=transcript|length=723bp|location=Sequence derived from alignment at sc0000106:537483..538205 (Clytia hemisphaerica)
AGGACATTATGGAGGGACAGGGTAGCGCTTTGGTGAAAGTATCAGTCTGA
ACATTTTCGAAGCGAGAAAAcatattgaattgaaaattgcgGGATGTACA
GAGAAGATTATTTGGtttagatgaaaagaaaaaaatctgacAGTGGCGCA
GATAGTATAATAATCGTTCGGTTTTTCCAAGAAACGGGATTTGTGTTTGA
CTTTCCATAAGAACATGAATAGCTAGATTACAGTGAATACGGTGGACAAA
AAGTTACTGGATTAAAGGATTATCAAAGGTGGAAAAAAGACGAAGAAAAT
GGTGACTCAAGAactagaaaaattgaaaaaagacaCGGAAAcattgaagt
aaaaaatgaaagGATGGTAAAAGAATAAACAAAAGCAAGGAAACTCACCG
ATTCCTTTCTCATTGGAGGAAATCGGCGGGAAGGAACTGTCATTTAGGCT
AAAGAACTGCTATTATAATGAAGAaggaaaaattgagaaaagtcAAATGT
GTCGGTGACAAAAGAAAATGGTTCTCAAAATAAAGAACAGAatggaagaa
aatttgaaaaggaaGAAAGGAGAACCTGGTCCTGCTAATTGCAGAAcggt
aaaactttttttttccgACAGACCAAATAGTTGAAGTGAGATTTTCTCTG
TGGATCGAATTTCTGGCGAAAGatatcacatactttattaGCCATTCAAA
AGAACATTCATTTTAATCAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005892XLOC_005892Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010504-exon-sc0000106-1491911889:537483..538205TCONS_00010504-exon-sc0000106-1491911889:537483..538205Clytia hemisphaericaexon
TCONS_00010504-exon-sc0000106-1510915933:537483..538205TCONS_00010504-exon-sc0000106-1510915933:537483..538205Clytia hemisphaericaexon
TCONS_00010504-exon-sc0000106-1575043694:537483..538205TCONS_00010504-exon-sc0000106-1575043694:537483..538205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:537483..538205 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.234454	0.152917	0	0	0	0	0.0581642	0.0720458	0.209788	0.137906	9.04327	6.86487	8.89691	13.7117	0.829043	1.00907	0.0733728	0.0767794	0.734087	0.488266	0.949683	0.93535	0.518747	0.992078	0	0.101007	0.38305	0.390267
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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