TCONS_00010495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010495
Unique NameTCONS_00010495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010495 ID=TCONS_00010495|Name=TCONS_00010495|organism=Clytia hemisphaerica|type=transcript|length=367bp
CGAAAACAATACGAAGGGGTGTTGTTTGTTTATCAGTTCTTATAACCCCA
CGATGACTTAAATAATGGGAGGTGCCAAtagaatatttttcacattCTTC
AATAACTTTCAAGTTTCTTTGTTCATTTATAATTTGCTCATAATCTGCAA
AAAGTTGTTTATCTTTCGAAAACTGTTCATGCAGGTGTTGTAAACGTTTT
TTAGCGGTTCTGTAATTATCTCCCAAAGGTtcagaattttctttgaaagg
aAGTGAAACATGATATCTTCCTTCCTCGAAAACagtcgatttttcaaaat
cttgtaaAACAGTTATATCCTCCTCTGTTAAAGTTTTTCTCCAATCAGTA
TCATAAGCTTTATTTNN
Run BLAST on NCBI

protein sequence of TCONS_00010495-protein

>TCONS_00010495-protein ID=TCONS_00010495-protein|Name=TCONS_00010495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
XNKAYDTDWRKTLTEEDITVLQDFEKSTVFEEGRYHVSLPFKENSEPLGD
NYRTAKKRLQHLHEQFSKDKQLFADYEQIINEQRNLKVIEECEKYSIGTS
HYLSHRGVIRTDKQTTPLRIVF
Run BLAST on NCBI

transcript from alignment at sc0000106:280644..281010

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010495 ID=TCONS_00010495|Name=TCONS_00010495|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at sc0000106:280644..281010 (Clytia hemisphaerica)
NNAAATAAAGCTTATGATACTGATTGGAGAAAAACTTTAACAGAGGAGGA
TATAACTGTTttacaagattttgaaaaatcgactGTTTTCGAGGAAGGAA
GATATCATGTTTCACTtcctttcaaagaaaattctgaACCTTTGGGAGAT
AATTACAGAACCGCTAAAAAACGTTTACAACACCTGCATGAACAGTTTTC
GAAAGATAAACAACTTTTTGCAGATTATGAGCAAATTATAAATGAACAAA
GAAACTTGAAAGTTATTGAAGaatgtgaaaaatattctaTTGGCACCTCC
CATTATTTAAGTCATCGTGGGGTTATAAGAACTGATAAACAAACAACACC
CCTTCGTATTGTTTTCG

Coding sequence (CDS) from alignment at sc0000106:280644..281010

>TCONS_00010495 ID=TCONS_00010495|Name=TCONS_00010495|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000106:280644..281010 (Clytia hemisphaerica)
NNAAATAAAGCTTATGATACTGATTGGAGAAAAACTTTAACAGAGGAGGA
TATAACTGTTttacaagattttgaaaaatcgactGTTTTCGAGGAAGGAA
GATATCATGTTTCACTtcctttcaaagaaaattctgaACCTTTGGGAGAT
AATTACAGAACCGCTAAAAAACGTTTACAACACCTGCATGAACAGTTTTC
GAAAGATAAACAACTTTTTGCAGATTATGAGCAAATTATAAATGAACAAA
GAAACTTGAAAGTTATTGAAGaatgtgaaaaatattctaTTGGCACCTCC
CATTATTTAAGTCATCGTGGGGTTATAAGAACTGATAAACAAACAACACC
CCTTCGTATTGTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005883XLOC_005883Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010495-exon-sc0000106-1491911889:280644..281010TCONS_00010495-exon-sc0000106-1491911889:280644..281010Clytia hemisphaericaexon
TCONS_00010495-exon-sc0000106-1510915933:280644..281010TCONS_00010495-exon-sc0000106-1510915933:280644..281010Clytia hemisphaericaexon
TCONS_00010495-exon-sc0000106-1575043694:280644..281010TCONS_00010495-exon-sc0000106-1575043694:280644..281010Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010495-proteinTCONS_00010495-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:280644..281010 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40236	0.567228	0.254239	0	3.02808	1.07312	2.0208	1.35132	0.828621	0.937507	2.72195	0.747721	1.19469	1.86105	5.35511	5.78374	2.46745	1.03663	1.19347	0.499552	3.77893	5.53765	2.03754	4.53508	0	1.57157	2.68118	3.85249	0.249225	0.761762
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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