TCONS_00010494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010494
Unique NameTCONS_00010494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010494 ID=TCONS_00010494|Name=TCONS_00010494|organism=Clytia hemisphaerica|type=transcript|length=428bp
tttgTAATAACGTTGACGTCTTTTGACTTACGTTGGGagatttcttcatt
ttgtactttcatgatgttttcacatgctttaatttccttttgaaGTCCTT
CGATTTTAGTGTTTCTGCATGTTTCAACTCGTTCCATCAGCTCTGGTGAG
ATCTTAACGCAACTTTGGCATTGGAAACTTCGAGATTTAAACGTTAAGCA
AATCTGTATTTGGTAGATTGGTAGCTGGGAACAGTTATAATGAACATCTC
GGTGGCACTTCCTGCAGGTCAGAGTGTCTTTTGGTGTTGTTCCTTCTCTA
ATAATGCATTTTTCTGGGGTGCAAGCCTCATTTTTAAGCGGCAATTCTTc
gtcattttcatcaattttttcctcCATTTTCCTTGCGAGATTCGCCAACT
TAAAAAAAGACGTCTTGATGCAAAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00010494-protein

>TCONS_00010494-protein ID=TCONS_00010494-protein|Name=TCONS_00010494-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
LFCIKTSFFKLANLARKMEEKIDENDEELPLKNEACTPEKCIIREGTTPK
DTLTCRKCHRDVHYNCSQLPIYQIQICLTFKSRSFQCQSCVKISPELMER
VETCRNTKIEGLQKEIKACENIMKVQNEEISQRKSKDVNVIT
Run BLAST on NCBI

transcript from alignment at sc0000106:271602..272029

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010494 ID=TCONS_00010494|Name=TCONS_00010494|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at sc0000106:271602..272029 (Clytia hemisphaerica)
CTTTTTTGCATCAAGACGTCTTTTTTTAAGTTGGCGAATCTCGCAAGGAA
AATGgaggaaaaaattgatgaaaatgacgAAGAATTGCCGCTTAAAAATG
AGGCTTGCACCCCAGAAAAATGCATTATTAGAGAAGGAACAACACCAAAA
GACACTCTGACCTGCAGGAAGTGCCACCGAGATGTTCATTATAACTGTTC
CCAGCTACCAATCTACCAAATACAGATTTGCTTAACGTTTAAATCTCGAA
GTTTCCAATGCCAAAGTTGCGTTAAGATCTCACCAGAGCTGATGGAACGA
GTTGAAACATGCAGAAACACTAAAATCGAAGGACttcaaaaggaaattaa
agcatgtgaaaacatcatgaaagtacaaaatgaagaaatctCCCAACGTA
AGTCAAAAGACGTCAACGTTATTAcaaa

Coding sequence (CDS) from alignment at sc0000106:271602..272029

>TCONS_00010494 ID=TCONS_00010494|Name=TCONS_00010494|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at sc0000106:271602..272029 (Clytia hemisphaerica)
CTTTTTTGCATCAAGACGTCTTTTTTTAAGTTGGCGAATCTCGCAAGGAA
AATGgaggaaaaaattgatgaaaatgacgAAGAATTGCCGCTTAAAAATG
AGGCTTGCACCCCAGAAAAATGCATTATTAGAGAAGGAACAACACCAAAA
GACACTCTGACCTGCAGGAAGTGCCACCGAGATGTTCATTATAACTGTTC
CCAGCTACCAATCTACCAAATACAGATTTGCTTAACGTTTAAATCTCGAA
GTTTCCAATGCCAAAGTTGCGTTAAGATCTCACCAGAGCTGATGGAACGA
GTTGAAACATGCAGAAACACTAAAATCGAAGGACttcaaaaggaaattaa
agcatgtgaaaacatcatgaaagtacaaaatgaagaaatctCCCAACGTA
AGTCAAAAGACGTCAACGTTATTAca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005882XLOC_005882Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010494-exon-sc0000106-1491911889:271602..272029TCONS_00010494-exon-sc0000106-1491911889:271602..272029Clytia hemisphaericaexon
TCONS_00010494-exon-sc0000106-1510915933:271602..272029TCONS_00010494-exon-sc0000106-1510915933:271602..272029Clytia hemisphaericaexon
TCONS_00010494-exon-sc0000106-1575043694:271602..272029TCONS_00010494-exon-sc0000106-1575043694:271602..272029Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010494-proteinTCONS_00010494-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:271602..272029 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27048	1.09649	3.21078	2.65861	5.85879	4.43708	4.94737	3.28861	2.85507	2.1983	2.94755	1.51046	1.6898	3.43712	0.618707	0.609256	1.21612	0.555029	0	1.44163	0.378676	0.27462	1.06198	0.237359	5.15163	6.41959	1.49384	2.59082	0.89903	0.88104
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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