TCONS_00010485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010485
Unique NameTCONS_00010485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010485 ID=TCONS_00010485|Name=TCONS_00010485|organism=Clytia hemisphaerica|type=transcript|length=419bp
cacttggtcaatttcagacatcatgcctgtttttggggtggtggtcaatc
tttcaaaatgttaaaaagcagTTAGTACAGATGTGTACTAACTGCCAAAG
GGGTGGTGTCAAGTGGGGTGGagaaaagttcaagaaaaaaaactgtACTA
ACTGCATTTCCTAGGAAGCTCTGACTACCAGATCTTCTTTCCAAAGGCTT
AATATGcgcttttttgtttgaaatctgTTCTTGGTTAGCTCTAATTTTGC
TTCTGTTTTTCTGTGTCGTGCCATTCTTTTAAAATCGTTGATGTTTATCT
CGTTTGGTAAAATGTGCGCGCGATATATACTAAATTGCCCTATATggcta
aacttttttgaaaattcagtgtttCGAGTATGACTACATGACACCAAAAT
CTCGTGTTTCCTCAGATCG
Run BLAST on NCBI

transcript from alignment at sc0000106:121498..121916

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010485 ID=TCONS_00010485|Name=TCONS_00010485|organism=Clytia hemisphaerica|type=transcript|length=419bp|location=Sequence derived from alignment at sc0000106:121498..121916 (Clytia hemisphaerica)
CGATCTGAGGAAACACGAGATTTTGGTGTCATGTAGTCATACTCGaaaca
ctgaattttcaaaaaagtttagccATATAGGGCAATTTAGTATATATCGC
GCGCACATTTTACCAAACGAGATAAACATCAACGATTTTAAAAGAATGGC
ACGACACAGAAAAACAGAAGCAAAATTAGAGCTAACCAAGAAcagatttc
aaacaaaaaagcgCATATTAAGCCTTTGGAAAGAAGATCTGGTAGTCAGA
GCTTCCTAGGAAATGCAGTTAGTacagttttttttcttgaacttttctCC
ACCCCACTTGACACCACCCCTTTGGCAGTTAGTACACATCTGTACTAAct
gctttttaacattttgaaagattgaccaccaccccaaaaacaggcatgat
gtctgaaattgaccaagtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005873XLOC_005873Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010485-exon-sc0000106-1491911889:121498..121916TCONS_00010485-exon-sc0000106-1491911889:121498..121916Clytia hemisphaericaexon
TCONS_00010485-exon-sc0000106-1510915933:121498..121916TCONS_00010485-exon-sc0000106-1510915933:121498..121916Clytia hemisphaericaexon
TCONS_00010485-exon-sc0000106-1575043694:121498..121916TCONS_00010485-exon-sc0000106-1575043694:121498..121916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:121498..121916 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61881	1.15388	0.82575	2.81932	0.524499	0	0	0.0814577	0.142364	0.328398	0.171161	0.150047	0.731652	0	0	0.787544	0.329849	0.800987	1.5391	0.640553	1.05484	1.40272	0	0.69208	0	0.588486	0.463305	0	0	2.16954
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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