TCONS_00010475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010475
Unique NameTCONS_00010475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010475 ID=TCONS_00010475|Name=TCONS_00010475|organism=Clytia hemisphaerica|type=transcript|length=560bp
ACGGTGACACATGGAAGCCGGCTCACGTTTATTTGAACTACCGTGGCTCG
TATGTGTACGTAATCGAAGCTGTTCGTGGCAATGGTTTTGCAGGAGATAT
TGCTATTGATGATATCACAGTTACTGATCAATGCCCTGCTCCACTGGAAT
GTTCATTTGAAGAAACCAACCCAGCTCTCTGTGGATGGGTCAACTTGAAA
CAAGGcgacaaatttgattggtctatCGGTCAAGGAGCTACATCTTCCGT
GAAAACGGGACCTTCATCCGATCACACATACAACGATGACAAAGGAAAAT
ATTTGTACATTGAGACATCAGGAAACCTTCGTAAAGGAGATAACGCATTG
GTTCAGTCCCCTAGTTACCCTGGTAATGGACAAACAAACGGACAATGTTT
CCAGTTTTGGTATCACATGACTGGCTCTTCCATCGGAACTATGaatcttt
ttgtgttgaaagcaGGTGGTCAGAAAGGCAACGCAGCTTGGTCGAAAACG
GGTGAGCAAGGAAACCGATGGCAAATCGGGCAACTCACCATCTATAGTCA
ACCTTCATAT
Run BLAST on NCBI

transcript from alignment at sc0000106:517731..518464-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010475 ID=TCONS_00010475|Name=TCONS_00010475|organism=Clytia hemisphaerica|type=transcript|length=734bp|location=Sequence derived from alignment at sc0000106:517731..518464- (Clytia hemisphaerica)
ACGGTGACACATGGAAGCCGGCTCACGTTTATTTGAACTACCGTGGCTCG
TATGTGTACGTAATCGAAGCTGTTCGTGGCAATGGTTTTGCAGGAGATAT
TGCTATTGATGATATCACAGTTACTGATCAATGCCCTGCTCCACGTATGT
TTTTTTCTCTTTTCAGTTTAAATAGACGTTGAGAGAGAAGCTAATATGTT
TTTGCTATACTTCCGATGAAAATGGAATATCTTTGTACGTTTTTTTGTTG
ATTTAATTTTTCTCAAGGGTATCGGGGTAAAGAATTCAAAAGTGGATGAT
CTCACATTTCTTTTACAGTGGAATGTTCATTTGAAGAAACCAACCCAGCT
CTCTGTGGATGGGTCAACTTGAAACAAGGCGACAAATTTGATTGGTCTAT
CGGTCAAGGAGCTACATCTTCCGTGAAAACGGGACCTTCATCCGATCACA
CATACAACGATGACAAAGGAAAATATTTGTACATTGAGACATCAGGAAAC
CTTCGTAAAGGAGATAACGCATTGGTTCAGTCCCCTAGTTACCCTGGTAA
TGGACAAACAAACGGACAATGTTTCCAGTTTTGGTATCACATGACTGGCT
CTTCCATCGGAACTATGAATCTTTTTGTGTTGAAAGCAGGTGGTCAGAAA
GGCAACGCAGCTTGGTCGAAAACGGGTGAGCAAGGAAACCGATGGCAAAT
CGGGCAACTCACCATCTATAGTCAACCTTCATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005866XLOC_005866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010475-exon-sc0000106-1575043694:518321..518464TCONS_00010475-exon-sc0000106-1575043694:518321..518464Clytia hemisphaericaexon
TCONS_00010475-exon-sc0000106-1575043694:517731..518146TCONS_00010475-exon-sc0000106-1575043694:517731..518146Clytia hemisphaericaexon
TCONS_00010475-exon-sc0000106-1510915933:518321..518464TCONS_00010475-exon-sc0000106-1510915933:518321..518464Clytia hemisphaericaexon
TCONS_00010475-exon-sc0000106-1510915933:517731..518146TCONS_00010475-exon-sc0000106-1510915933:517731..518146Clytia hemisphaericaexon
TCONS_00010475-exon-sc0000106-1491911889:518321..518464TCONS_00010475-exon-sc0000106-1491911889:518321..518464Clytia hemisphaericaexon
TCONS_00010475-exon-sc0000106-1491911889:517731..518146TCONS_00010475-exon-sc0000106-1491911889:517731..518146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:517731..518464 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.321297	0.0144848	0.22393	0.157121	0.215423	0.138087	0.339614	1.33512	0.204853	0.363864	0.425553	6.13944	8.80059	1.9545	6.06498	3.85	1.9207	5.58643	6.83899	11.0864	6.88138	0.6377	1.57776	6.44002	3.08936	0	0	1.75053	2.94338
Blast
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BLAST of TCONS_00010475 vs. Swiss-Prot (Human)
Match: MALR1 (MAM and LDL-receptor class A domain-containing protein 1 OS=Homo sapiens GN=MALRD1 PE=1 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 2.661e-19
Identity = 57/167 (34.13%), Postives = 76/167 (45.51%), Query Frame = 3 
Query:   60 VIEAVRGNGFAGDIAIDDITVTDQCPAPLECSFEETNPALCGWVNLKQGDKFDWSIGQGATSSVKTGPSSDHTYNDDKGKYLYIETSGNLRKGDNALVQSPSYPGNGQTNGQCFQFWYHMTGSSIGTMNLFVLKAGGQKGNAAWSKTGEQGNRWQIGQLTIYSQPSY 560
             IE +R      D    D T    C   L+C+FE     +C W      D FDW+  QG T ++ TGP  D+T    KG YLYIE+S      D+A + SP       T G  F+F+YHM G  I  + ++       +G   W   G QGNRW    L I S+  +
Sbjct:  837 CIEKLRLCDLVDDCG--DRTDEVNCAPELQCNFET---GICNWEQ-DAKDDFDWTRSQGPTPTLNTGPMKDNTLGTAKGHYLYIESSEPQAFQDSAALLSPILNAT-DTKGCTFRFYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHLNISSRQPF 996
The following BLAST results are available for this feature:
BLAST of TCONS_00010475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MALR12.661e-1934.13MAM and LDL-receptor class A domain-containing pro... [more]
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