TCONS_00010459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010459
Unique NameTCONS_00010459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1010

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010459 ID=TCONS_00010459|Name=TCONS_00010459|organism=Clytia hemisphaerica|type=transcript|length=1010bp
gaaaaattattttgagctagAGTGTTATTTTTGGCATCTTCAGTTCACTA
TATATAACGATATGGAGGAATAATTAAcacaatatcaaattttcaaatct
gaATCACCATCGATAGCAACAGGTACTCATTACACTTCAccatcaatttt
tcaaattcttgaaTTTCAAGCCATGCATTTGCTattaaatttaatttgat
tttataaACTGTTATTCTAACGTACTCTTTCACTTTTCAGGAAAATACAT
TGAAAATGGAGCTCTTAAGATTGTTCTCATTTTGTGcatttttcatTGGA
GTGTCAAGTCGTAAATGGATAGTTTCACCCACTTTAATCGGAGATTTACA
CAACAAGATCAGAGAGCAATACGTGGACACACCTCCCTTGAAAGCAGATT
ACAGACTCTCTGCAGATGCTCAAAATTGTGCGCAATACTTATTAGACAAC
CCTTCACTTGATATTCTTACTCATCCATGCAACCCTGGACATTTCGGAGA
AAACATCTACAAACTTTCCGCCGTCAGTGCCGACAACGAAGTCTTCCAAA
GAGCCACTGAAATTTgGCATGATGAAGAAAAAGATCTCCCAGACAGAAGC
GACAGTCTTTGGTACTTGATGGTCAATTTCAATAATAGAAACAAGCCTGT
CGGACATTTCATTCAGgaaatttgGGCTCTCGCAACCAAAGTTGGATGCG
GTATGGCATCTGATGACAATAATGTATCAATCGTCGTTTGTCGGTACGAT
AAAGCAGTCAACGCTTTGGGAACACAACTTCGAGACAACGTTCATTTGAA
GAAACAATCAGCCATAAACAATAATTGTCAAGACACACCAAATTTCCCAT
GCACGCAAGATTTGTGTGCTCATTTTGGAGATTTGTATTGCAAAAAGTCA
TGTAACAAATGCTAAACTGTTTAAAAGAGACACTTTAATGTATAATATTA
TTATTCCCGACAAATTGTAAAAGCTCTTCCTTCTCactgataaaataaaa
tacctaatta
Run BLAST on NCBI

protein sequence of TCONS_00010459-protein

>TCONS_00010459-protein ID=TCONS_00010459-protein|Name=TCONS_00010459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MELLRLFSFCAFFIGVSSRKWIVSPTLIGDLHNKIREQYVDTPPLKADYR
LSADAQNCAQYLLDNPSLDILTHPCNPGHFGENIYKLSAVSADNEVFQRA
TEIWHDEEKDLPDRSDSLWYLMVNFNNRNKPVGHFIQEIWALATKVGCGM
ASDDNNVSIVVCRYDKAVNALGTQLRDNVHLKKQSAINNNCQDTPNFPCT
QDLCAHFGDLYCKKSCNKC
Run BLAST on NCBI

transcript from alignment at sc0000106:462230..465055-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010459 ID=TCONS_00010459|Name=TCONS_00010459|organism=Clytia hemisphaerica|type=transcript|length=2826bp|location=Sequence derived from alignment at sc0000106:462230..465055- (Clytia hemisphaerica)
GAAAAATTATTTTGAGCTAGAGTGTTATTTTTGGCATCTTCAGTTCACTA
TATATAACGATATGGAGGAATAATTAACACAATATCAAATTTTCAAATCT
GAATCACCATCGATAGCAACAGGTACTCATTACACTTCACCATCAATTTT
TCAAATTCTTGAATTTCAAGCCATGCATTTGCTATTAAATTTAATTTGAT
TTTATAAACTGTTATTCTAACGTACTCTTTCACTTTTCAGGAAAATACAT
TGAAAATGGAGCTCTTAAGATTGTTCTCATTTTGTGGTAAGTTCTTAGTT
TCATGGAATGGATCGATTGTAAACATCGAAAATCGGAGAAATAGTTCTGA
AACGTAATAATATGCACTTATAAGCCCTTACGTACCTTACAACTTGTGTT
ATCTTATCAAAGCATGGGTTTCAGTTCATTCAAGGGGAAAATTTGGGGCA
GGATGTTGTCCTGTTCATTATCCACGACTGACAAAATATTTGTTACTTTT
ATTTTAGCATTTTTCATTGGAGTGTCAAGTCGTAAATGGATAGGTAAGCC
CGAACCTTTCTTATCACGACCTGTCCCTACTTTATTGGTTCTTTCTTCCA
TTTACCGTGTTTATGCGTGCCGTTGGAAGCTACCTATTCCATGCGACACA
AGTTTGTTGCTGTGTCTGTTTTCATACTGTGGAAATCGATTGCTTTTGAA
AAAACATTATATTTGGGAGTTCTGTCTACAGTTACGTGATTTGCAATGAT
CCTTAACTTTCTGACAATTTTTAGTTTCACCCACTTTAATCGGAGATTTA
CACAACAAGATCAGAGAGCAATACGTGGACACACCTCCCTTGAAAGCAGA
TTACAGACTCTCTGCAGATGCTCAAAATTGTGCGCAATACTTATTAGACA
ACCCTTCACTTGATATTCTTACTCATCCATGCAACCCTGGACATTTCGGA
GAAAACATCTACAAACTTTCCGCCGTCAGTGCCGACAACGAAGTCTTCCA
AAGAGCCACTGAAATTTGGTAAATAGAAAATTTTTGATTGTTGCTGTGGT
CTGCAAAATTGATTTAAGGCTTTATTTTGGTAAATTTATTTTTGATTTGC
CAAACATCAATTATTCACTGCTACGAGAATTTGTATTTGCAGCTAATTCT
CGCCAATTCGAATTCGAACTGGACATCTATCTTGTTCGAATTAAAGAAAG
TATTTTACAGGGATTTCCCCTTGACGGAAACTGAGTTCTGGCTCAAATGA
TAAATTCGAATAAGCAAGAGTCCACTAATTAAATATCCCTTCTTCTCAAT
TTCAGGCATGATGAAGAAAAAGATCTCCCAGACAGAAGCGACAGTCTTTG
GTACTTGATGGTCAATTTCAATAATAGAAACAAGCCTGTCGGACATTTCA
TTCAGGTAAGAAGTCACTTATTTCCCTGTATTTACTTTGAAATGCTTTCG
AATGAAAAGTCAGCAGAGTTGAATGAAAATAAGCTAGTTTCTATGATTGC
AAAGGGGGGAGGCCCAGAATCATCGAGAAAATTATCAACTAATGCAAATT
TATCTAAAAATTATTTTCCAAATTGGAAGACTGATATTTTCAAAATAAGT
ACAAAAGGATTTTTCAACTTTTCAAACTTGGATTTTTATGTACACAAAAA
GAAATTTAGGTTAATTAACTCGAAAACTTGTGTACGAAAAAAAGATCGAG
TTGACTAACTCAAAAATATTTTTGTGAGAATAAAAAAATCGAGTTAAGAG
TCGAGTGACGTAATAACTTGCACTTTTATGACGTCATAAGTTAGCTAGCT
CAAAAATTCCTAACTCGAAGTTTTCTAACTCGATGATTCCGGGCCTCAAG
GGGGGGATTGTGCGTTTTAAACAAAAATGGAGGAGTAGCCAATTTGGAAA
ATTACGACAGGTTTAGTCAAAAGAAGTTACCTTATAATACAAGAAATTAG
TAGAACTTTCGCCATAACGAAGTTTTTCTCTCATGAGAAAAAGACTTGTA
TATTCTTACCTGGTAAAAATTTTCACGGAAAGAGGTCATATTTGTGTTGC
TCAGTAAAAATTTGTTCGAACAAACCATTCGCCAACTGGGGGGGGCTACC
CTTGCCGACCGACGGGGTGCTCCGCTGAGGTTCGAAAAATGGACCTCACA
TGTCACTCGATTTTTCGAAAATTTTACAAAGATTTGCAAAAAAATTGACA
CTGAATAGGACTAAATTCCAAAATTTTCCCAAAACTTTCCACTTTCTTCT
CAAAAAAAGGTACCCTACGATGGACTGATTTTTCTATTGTGGTGTTTCTA
CGACCCTGCCTGAGACTAAAAAGGTACTCTGAGCAGAAGCACATTTGCCA
AGTAACCCTTTGGCATCCAGAACTTTCTTCAAAAAGACAAAATTCTGTTC
ACGAAGTTTCAAAAATATTCTTATTCTAGTGGAGGGTTATGAAAATTAAA
GGATATTATGGGAATTTAAATTTATTTTTCAGGAAATTTGGGCTCTCGCA
ACCAAAGTTGGATGCGGTATGGCATCTGATGACAATAATGTATCAATCGT
CGTTTGTCGGTACGATAAAGCAGTCAACGCTTTGGGAACACAACTTCGAG
ACAACGTTCATTTGAAGAAACAATCAGCCATAAACAATAATTGTCAAGAC
ACACCAAATTTCCCATGCACGCAAGATTTGTGTGCTCATTTTGGAGATTT
GTATTGCAAAAAGTCATGTAACAAATGCTAAACTGTTTAAAAGAGACACT
TTAATGTATAATATTATTATTCCCGACAAATTGTAAAAGCTCTTCCTTCT
CACTGATAAAATAAAATACCTAATTA

Coding sequence (CDS) from alignment at sc0000106:462230..465055-

>TCONS_00010459 ID=TCONS_00010459|Name=TCONS_00010459|organism=Clytia hemisphaerica|type=CDS|length=3300bp|location=Sequence derived from alignment at sc0000106:462230..465055- (Clytia hemisphaerica)
GAAATTTGGGCTCTCGCAACCAAAGTTGGATGCGGTATGGCATCTGATGA
CAATAATGTATCAATCGTCGTTTGTCGGTACGATAAAGCAGTCAACGCTT
TGGGAACACAACTTCGAGACAACGTTCATTTGAAGAAACAATCAGCCATA
AACAATAATTGTCAAGACACACCAAATTTCCCATGCACGCAAGATTTGTG
TGCTCATTTTGGAGATTTGTATTGCAAAAAGTCATGTAACAAATGCTAAG
CATGATGAAGAAAAAGATCTCCCAGACAGAAGCGACAGTCTTTGGTACTT
GATGGTCAATTTCAATAATAGAAACAAGCCTGTCGGACATTTCATTCAGT
TTCACCCACTTTAATCGGAGATTTACACAACAAGATCAGAGAGCAATACG
TGGACACACCTCCCTTGAAAGCAGATTACAGACTCTCTGCAGATGCTCAA
AATTGTGCGCAATACTTATTAGACAACCCTTCACTTGATATTCTTACTCA
TCCATGCAACCCTGGACATTTCGGAGAAAACATCTACAAACTTTCCGCCG
TCAGTGCCGACAACGAAGTCTTCCAAAGAGCCACTGAAATTTGCATTTTT
CATTGGAGTGTCAAGTCGTAAATGGATAGATGGAGCTCTTAAGATTGTTC
TCATTTTGTGGAAATTTGGGCTCTCGCAACCAAAGTTGGATGCGGTATGG
CATCTGATGACAATAATGTATCAATCGTCGTTTGTCGGTACGATAAAGCA
GTCAACGCTTTGGGAACACAACTTCGAGACAACGTTCATTTGAAGAAACA
ATCAGCCATAAACAATAATTGTCAAGACACACCAAATTTCCCATGCACGC
AAGATTTGTGTGCTCATTTTGGAGATTTGTATTGCAAAAAGTCATGTAAC
AAATGCTAAGCATGATGAAGAAAAAGATCTCCCAGACAGAAGCGACAGTC
TTTGGTACTTGATGGTCAATTTCAATAATAGAAACAAGCCTGTCGGACAT
TTCATTCAGTTTCACCCACTTTAATCGGAGATTTACACAACAAGATCAGA
GAGCAATACGTGGACACACCTCCCTTGAAAGCAGATTACAGACTCTCTGC
AGATGCTCAAAATTGTGCGCAATACTTATTAGACAACCCTTCACTTGATA
TTCTTACTCATCCATGCAACCCTGGACATTTCGGAGAAAACATCTACAAA
CTTTCCGCCGTCAGTGCCGACAACGAAGTCTTCCAAAGAGCCACTGAAAT
TTGCATTTTTCATTGGAGTGTCAAGTCGTAAATGGATAGATGGAGCTCTT
AAGATTGTTCTCATTTTGTGGAAATTTGGGCTCTCGCAACCAAAGTTGGA
TGCGGTATGGCATCTGATGACAATAATGTATCAATCGTCGTTTGTCGGTA
CGATAAAGCAGTCAACGCTTTGGGAACACAACTTCGAGACAACGTTCATT
TGAAGAAACAATCAGCCATAAACAATAATTGTCAAGACACACCAAATTTC
CCATGCACGCAAGATTTGTGTGCTCATTTTGGAGATTTGTATTGCAAAAA
GTCATGTAACAAATGCTAAGCATGATGAAGAAAAAGATCTCCCAGACAGA
AGCGACAGTCTTTGGTACTTGATGGTCAATTTCAATAATAGAAACAAGCC
TGTCGGACATTTCATTCAGTTTCACCCACTTTAATCGGAGATTTACACAA
CAAGATCAGAGAGCAATACGTGGACACACCTCCCTTGAAAGCAGATTACA
GACTCTCTGCAGATGCTCAAAATTGTGCGCAATACTTATTAGACAACCCT
TCACTTGATATTCTTACTCATCCATGCAACCCTGGACATTTCGGAGAAAA
CATCTACAAACTTTCCGCCGTCAGTGCCGACAACGAAGTCTTCCAAAGAG
CCACTGAAATTTGCATTTTTCATTGGAGTGTCAAGTCGTAAATGGATAGA
TGGAGCTCTTAAGATTGTTCTCATTTTGTGGAAATTTGGGCTCTCGCAAC
CAAAGTTGGATGCGGTATGGCATCTGATGACAATAATGTATCAATCGTCG
TTTGTCGGTACGATAAAGCAGTCAACGCTTTGGGAACACAACTTCGAGAC
AACGTTCATTTGAAGAAACAATCAGCCATAAACAATAATTGTCAAGACAC
ACCAAATTTCCCATGCACGCAAGATTTGTGTGCTCATTTTGGAGATTTGT
ATTGCAAAAAGTCATGTAACAAATGCTAAGCATGATGAAGAAAAAGATCT
CCCAGACAGAAGCGACAGTCTTTGGTACTTGATGGTCAATTTCAATAATA
GAAACAAGCCTGTCGGACATTTCATTCAGTTTCACCCACTTTAATCGGAG
ATTTACACAACAAGATCAGAGAGCAATACGTGGACACACCTCCCTTGAAA
GCAGATTACAGACTCTCTGCAGATGCTCAAAATTGTGCGCAATACTTATT
AGACAACCCTTCACTTGATATTCTTACTCATCCATGCAACCCTGGACATT
TCGGAGAAAACATCTACAAACTTTCCGCCGTCAGTGCCGACAACGAAGTC
TTCCAAAGAGCCACTGAAATTTGCATTTTTCATTGGAGTGTCAAGTCGTA
AATGGATAGATGGAGCTCTTAAGATTGTTCTCATTTTGTGGAAATTTGGG
CTCTCGCAACCAAAGTTGGATGCGGTATGGCATCTGATGACAATAATGTA
TCAATCGTCGTTTGTCGGTACGATAAAGCAGTCAACGCTTTGGGAACACA
ACTTCGAGACAACGTTCATTTGAAGAAACAATCAGCCATAAACAATAATT
GTCAAGACACACCAAATTTCCCATGCACGCAAGATTTGTGTGCTCATTTT
GGAGATTTGTATTGCAAAAAGTCATGTAACAAATGCTAAGCATGATGAAG
AAAAAGATCTCCCAGACAGAAGCGACAGTCTTTGGTACTTGATGGTCAAT
TTCAATAATAGAAACAAGCCTGTCGGACATTTCATTCAGTTTCACCCACT
TTAATCGGAGATTTACACAACAAGATCAGAGAGCAATACGTGGACACACC
TCCCTTGAAAGCAGATTACAGACTCTCTGCAGATGCTCAAAATTGTGCGC
AATACTTATTAGACAACCCTTCACTTGATATTCTTACTCATCCATGCAAC
CCTGGACATTTCGGAGAAAACATCTACAAACTTTCCGCCGTCAGTGCCGA
CAACGAAGTCTTCCAAAGAGCCACTGAAATTTGCATTTTTCATTGGAGTG
TCAAGTCGTAAATGGATAGATGGAGCTCTTAAGATTGTTCTCATTTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005865XLOC_005865Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010459-exon-sc0000106-1575043694:464770..465055TCONS_00010459-exon-sc0000106-1575043694:464770..465055Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1575043694:464513..464548TCONS_00010459-exon-sc0000106-1575043694:464513..464548Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1575043694:464038..464281TCONS_00010459-exon-sc0000106-1575043694:464038..464281Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1575043694:463651..463750TCONS_00010459-exon-sc0000106-1575043694:463651..463750Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1575043694:462230..462573TCONS_00010459-exon-sc0000106-1575043694:462230..462573Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1510915933:464770..465055TCONS_00010459-exon-sc0000106-1510915933:464770..465055Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1510915933:464513..464548TCONS_00010459-exon-sc0000106-1510915933:464513..464548Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1510915933:464038..464281TCONS_00010459-exon-sc0000106-1510915933:464038..464281Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1510915933:463651..463750TCONS_00010459-exon-sc0000106-1510915933:463651..463750Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1510915933:462230..462573TCONS_00010459-exon-sc0000106-1510915933:462230..462573Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1491911889:464770..465055TCONS_00010459-exon-sc0000106-1491911889:464770..465055Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1491911889:464513..464548TCONS_00010459-exon-sc0000106-1491911889:464513..464548Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1491911889:464038..464281TCONS_00010459-exon-sc0000106-1491911889:464038..464281Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1491911889:463651..463750TCONS_00010459-exon-sc0000106-1491911889:463651..463750Clytia hemisphaericaexon
TCONS_00010459-exon-sc0000106-1491911889:462230..462573TCONS_00010459-exon-sc0000106-1491911889:462230..462573Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010459-proteinTCONS_00010459-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:462230..465055 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0442918	0.129574	0.0501495	0.0490634	0.83622	0.707992	0.170832	0.213242	0.0746477	0.878401	0	0.176989	63.156	49.5582	0.477857	0.296892	11.6706	11.5872	375.912	371.884	53.0159	53.703	20.6691	34.4429	41.9903	41.5073	0	0	0.0491605	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001283Allrgn_V5/Tpx1
IPR014044CAP_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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