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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010425 ID=TCONS_00010425|Name=TCONS_00010425|organism=Clytia hemisphaerica|type=transcript|length=3489bpRun BLAST on NCBI protein sequence of TCONS_00010425-protein >TCONS_00010425-protein ID=TCONS_00010425-protein|Name=TCONS_00010425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp MREIPGFYYDEEKKKYFKITKDHIQSKRSKVKVAVKETNAATKNKKSASLRun BLAST on NCBI transcript from alignment at sc0000106:46088..70075- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010425 ID=TCONS_00010425|Name=TCONS_00010425|organism=Clytia hemisphaerica|type=transcript|length=23988bp|location=Sequence derived from alignment at sc0000106:46088..70075- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000106:46088..70075- >TCONS_00010425 ID=TCONS_00010425|Name=TCONS_00010425|organism=Clytia hemisphaerica|type=CDS|length=16809bp|location=Sequence derived from alignment at sc0000106:46088..70075- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010425 vs. Swiss-Prot (Human)
Match: PRS23 (Serine protease 23 OS=Homo sapiens GN=PRSS23 PE=1 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.080e-57 Identity = 106/250 (42.40%), Postives = 154/250 (61.60%), Query Frame = 2
Query: 2498 NVYGRDDRTFIPVNNNFGLKEPYIFTVRISTGCTGILISPRHVLTAAHCVHDQKDYVKQTKDLKIGLLKDK------------------STYEWLGVKNIKLSKGWIEGGQRN-GPFYDYALLKLSRKHRRPYIRISISEEKHHGSGERISFSGFDDDKPTGTMWYRSCTVVEDDRTFLYHYCDAQPGSSGSGVYSWVFDEETGRWERELVGVFSGNRWRTYDEFYIRVKNFNVAVRLTRYKYAQICKWL 3190
+YG D R F +F L P+ +V++STGCTG L++ +HVLTAAHC+HD K YVK T+ L++G LK K ++W+ VK + KGWI+G + G YDYALL+L + H+R +++I +S G RI FSG+D+D+P G + YR C V ++ LY CDAQPG+SGSGVY ++ + +WER+++G+FSG++W + ++FNVAVR+T KYAQIC W+
Sbjct: 129 QIYGYDSR-FSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKFKDGGRGANDSTSAMPEQMKFQWIRVKRTHVPKGWIKGNANDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRP-GNLVYRFCDVKDETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNG---SPQDFNVAVRITPLKYAQICYWI 373 The following BLAST results are available for this feature:
BLAST of TCONS_00010425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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