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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010420 ID=TCONS_00010420|Name=TCONS_00010420|organism=Clytia hemisphaerica|type=transcript|length=1653bp
TCTATGAAATACTCGTGAAGATGCAGTGTCGAGTTCTACATAGCTCTGAA
GATATACACAAAAATCTGTTGCAGGCGTTCAGTAACTATGCCAATCATTA
ATAAGGCTAGGTTTTCAACCTCAAATAGTTGATTGTTTCCTATAAAACGT
CAGACGGAACAGATAGAGAAATCAATGATACAGTGACATTATATGGTATG
CGTTGTTCGCTACACACCTTCACAAGATGGAAATGCAAGGATTgattttt
ctcttgatttactcGACACGTCTTGTTGGTGGTTATGATATTTTCAGTCA
GTTATATTACCCATCTAAAGAAAACACTTTCTTGGAGGAGGAAATCACCA
ACGACATCCCTCGTCTTGTCAGTCGATACAGCCGGTATGAAATGAGGACC
AGATTTACGGGAAATTATAATGGTTCTATGTACACATCACATGAAACGCT
CGGTGGCTATGAACAGGAGACGGACAACGAGTTATCGTACGAGACAACTG
TCGTCAGGTCGGGAAAACGAATCGTAACATTTGTCGGCGTCGAGAAAAAG
AAAGTTCAAAAGTCTTCAATGTTTAATCAATACCATAACTTTTATAAAAC
GAAACAAATTAAAATCCCACAGAAGAGAAAACAGAAAACGAAGAAGCGTC
GAGTGCGGAGAAACGTTTACGGGCGTGATGATCGAACATTCATTCCAGTC
AATAACAATTTCGGACTGAAGGAGCCCTATATATTCACCGTCCGTATCTC
CACTGGATGTACCGGTATTTTGATCTCGCCACGTCACGTCTTAACGGCCG
CGCATTGCGTACACGATCAAAAGGATTACGTGAAACAAACCAAAGACTTG
AAAATTGGTTTACTAAAAGATAAGAGCACTTATGAATGGCTGGGCgttaa
aaacattaaactatCCAAAGGGTGGATTGAGGGCGGTCAACGTAACGGGC
CATTTTACGATTACGCTTTACTGAAACTTTCACGTAAACACAGACGTCCG
TACATACGTATCAGTATAAGTGAAGAGAAGCATCATGGATCGGGTGAACG
GATTTCGTTCTCGGGTTTTGATGACGACAAACCAACGGGCACCATGTGGT
ACCGATCTTGCACCGTGGTTGAAGACGATCGGACATTTCTGTACCACTAT
TGTGATGCTCAACCGGGGTCATCAGGATCAGGTGTTTACTCATGGGTTTT
CGACGAGGAAACAGGACGATGGGAACGAGAATTGGTCGGTGTCTTCTCGG
GAAACCGATGGCGAACTTACGACGAATTTTATATTCGAGTGAAAAACTTC
AATGTCGCTGTCCGTCTGACCAGGTATAAATATGCACAAATCTGTAAATG
GCTTGGCTCAAAAATGGCTGCCAAAATATGTAAAGATAAAATTGATAGAA
ATTAAATGAGAGCTTAATAGTATTAACGTTCCTCGTTATTTATAATAGTT
AGGTTTAGATTACCGTGTTGTTATTAAAGATTATTACCCATAATAATTAA
TATATGTAAGTAGAGCTTTTTTGGTATATCTTGATGCTGATTGCAATCAG
ACCAATCTCGCATCGCAATTATTATCTCATCTCACAGATTCTcgtcaaaa
tcttttttcatctcTATAAAGTTCTTTATCGGTTTGAGGCTCTTGAACAG
TCG Run BLAST on NCBI transcript from alignment at sc0000106:46088..48836- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010420 ID=TCONS_00010420|Name=TCONS_00010420|organism=Clytia hemisphaerica|type=transcript|length=2749bp|location=Sequence derived from alignment at sc0000106:46088..48836- (Clytia hemisphaerica)
TCTATGAAATACTCGTGAAGATGCAGTGTCGAGTTCTACATAGCTCTGAA
GATATACACAAAAATCTGTTGCAGGCGTTCAGTAACTATGCCAATCATTA
ATAAGGCTAGGTTTTCAACCTCAAATAGTTGGTAGTAGGTGAATTGCTTT
CATATTCAGTGACCTTTATGGAGTTTTTGAAAAAGTTTTGAATTGCAAGC
ATTTATTAGAGGTGAGGTTTTGTACTGGAAGCTCTTGTCAACAGTAGACA
GAATGAGATCACATCGTGTAGCATGAATATTGTAAGAGTACTGTTGGTGT
TCTTTGAACAGCATCCGATATTTGTTTGTCTATTTTTTGTACGGTTATCA
ATTAATTAGTTTTATTTCCATCGCTTAGTTACACAGATGGATTTAAACTA
TCGCCTTCGAATAATTTCCTGCCTTTTCAATTCTGTAAAAAAAAATCTGT
TTCTTGCAGACTTTTCTCGTGTTTTATGCGTTAGAATGCTTTGGGAGGGA
GATCTGTAACAATTTCTTTGCGAGNTTTGCAGACTTTTCTCGTGTTTTAT
ACGTTAGAATGCTTTGGGAGGGAGATCTGTAACAATTTCTTTGCGAGTGA
CATTCTCTTTTTGTGTGTCATCCTGACTTGTTTAGCACGGCATGTCAACG
CACTGTTATTGTATTCAACTTTTATTAGCGATGTGAATTGTGGTTTAGAG
CACAACAAGCAACACTCATCATTTCTCATTATTCTTTTAACGTATCAGTT
ACGGAAAGGTTTTTTTATTTTCTCTCATAGATTGTTTCCTATAAAACGTC
AGACGGAACAGATAGAGAAATCAATGATACAGTGACATTATATGGTATGC
GTTGTTCGCTACACACCTTCACAAGATGGAAATGCAAGGATTGATTTTTC
TCTTGATTTACTCGACACGTCTTGTTGGTGGTTATGATATTTTCAGTCAG
TTATATTACCCATCTAAAGAAAACACTTTCTTGGAGGAGGAAATCACCAA
CGACATCCCTCGTCTTGTCAGTCGATACAGCCGGTATGAAATGAGGACCA
GATTTACGGGAAATTATAATGGTTCTATGTACACATCACATGAAACGCTC
GGTGGCTATGAACAGGAGACGGACAACGAGTTATCGTACGAGACAACTGT
CGTCAGGTCGGGAAAACGAATCGTAACATTTGTCGGCGTCGAGAAAAAGA
AAGTTCAAAAGTCTTCAATGTTTAATCAATACCATAACTTTTATAAAACG
AAACAAATTAAAATCCCACAGAAGAGAAAACAGAAAACGAAGAAGCGTCG
AGTGCGGAGAAACGTTTACGGGCGTGATGATCGAACATTCATTCCAGTCA
ATAACAATTTCGGACTGAAGGAGCCCTATATATTCACCGTCCGTATCTCC
ACTGGATGTACCGGTATTTTGATCTCGCCACGTCACGTCTTAACGGCCGC
GCATTGCGTACACGATCAAAAGGATTACGTGAAACAAACCAAAGACTTGA
AAATTGGTTTACTAAAAGATAAGAGCACTTATGAATGGCTGGGCGTTAAA
AACATTAAACTATCCAAAGGGTGGATTGAGGGCGGTCAACGTAACGGGCC
ATTTTACGATTACGCTTTACTGAAACTTTCACGTAAACACAGACGTCCGT
ACATACGTATCAGTATAAGTGAAGAGAAGCATCATGGATCGGGTGAACGG
ATTTCGTTCTCGGGTTTTGATGACGACAAACCAACGGGCACCATGTGGTA
CCGGTGAGTGACTTTATTTATTTTTCATTCTCTTCTTATGGAATATCCTT
TTTTTTTATCAGATACTTTTGATAAAGCCTCACACTGTGTTTTTCGATTT
GTATATTGCTCTTATTTTCCTAAGGTAAAGGCCGGTCCCCACTTGCGCGC
GCTGCGATCGCCTTTTTTCAAGCATAGCAATTGGTCAAAAGAAAATTGAA
ACAATTCCATAGGCACAATCTGACGTAACGGTTGAAAACAGTTGAAATGT
ATTCTTTTTTTTTCGAGCGCGCGCTACAATTTTTTTGACGTAATCTTTTT
TCCAAGCAAAGAGGATTGAAACCAAAAGGTGCGATCGCAGTGCGCGTAAG
TGGAGACCGGCCTTAAAGTTGGATTGCCAATTATTTTGACAAAACAGCTA
GACGATGATATAACGATAATAATGAAGTCATTTTTTCTTTATTTCTTCAG
ATCTTGCACCGTGGTTGAAGACGATCGGACATTTCTGTACCACTATTGTG
ATGCTCAACCGGGGTCATCAGGATCAGGTGTTTACTCATGGGTTTTCGAC
GAGGAAACAGGACGATGGGAACGAGAATTGGTCGGTGTCTTCTCGGGAAA
CCGATGGCGAACTTACGACGAATTTTATATTCGAGTGAAAAACTTCAATG
TCGCTGTCCGTCTGACCAGGTATAAATATGCACAAATCTGTAAATGGCTT
GGCTCAAAAATGGCTGCCAAAATATGTAAAGATAAAATTGATAGAAATTA
AATGAGAGCTTAATAGTATTAACGTTCCTCGTTATTTATAATAGTTAGGT
TTAGATTACCGTGTTGTTATTAAAGATTATTACCCATAATAATTAATATA
TGTAAGTAGAGCTTTTTTGGTATATCTTGATGCTGATTGCAATCAGACCA
ATCTCGCATCGCAATTATTATCTCATCTCACAGATTCTCGTCAAAATCTT
TTTTCATCTCTATAAAGTTCTTTATCGGTTTGAGGCTCTTGAACAGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010420-exon-sc0000106-1575043694:48706..48836 | TCONS_00010420-exon-sc0000106-1575043694:48706..48836 | Clytia hemisphaerica | exon |
| TCONS_00010420-exon-sc0000106-1575043694:47084..48056 | TCONS_00010420-exon-sc0000106-1575043694:47084..48056 | Clytia hemisphaerica | exon |
| TCONS_00010420-exon-sc0000106-1575043694:46088..46636 | TCONS_00010420-exon-sc0000106-1575043694:46088..46636 | Clytia hemisphaerica | exon |
| TCONS_00010420-exon-sc0000106-1510915933:48706..48836 | TCONS_00010420-exon-sc0000106-1510915933:48706..48836 | Clytia hemisphaerica | exon |
| TCONS_00010420-exon-sc0000106-1510915933:47084..48056 | TCONS_00010420-exon-sc0000106-1510915933:47084..48056 | Clytia hemisphaerica | exon |
| TCONS_00010420-exon-sc0000106-1510915933:46088..46636 | TCONS_00010420-exon-sc0000106-1510915933:46088..46636 | Clytia hemisphaerica | exon |
| TCONS_00010420-exon-sc0000106-1491911889:48706..48836 | TCONS_00010420-exon-sc0000106-1491911889:48706..48836 | Clytia hemisphaerica | exon |
| TCONS_00010420-exon-sc0000106-1491911889:47084..48056 | TCONS_00010420-exon-sc0000106-1491911889:47084..48056 | Clytia hemisphaerica | exon |
| TCONS_00010420-exon-sc0000106-1491911889:46088..46636 | TCONS_00010420-exon-sc0000106-1491911889:46088..46636 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000106 | supercontig | sc0000106:46088..48836 - |
Blast
BLAST of TCONS_00010420 vs. Swiss-Prot (Human)
Match: PRS23 (Serine protease 23 OS=Homo sapiens GN=PRSS23 PE=1 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 4.938e-60 Identity = 106/250 (42.40%), Postives = 154/250 (61.60%), Query Frame = 2
Query: 662 NVYGRDDRTFIPVNNNFGLKEPYIFTVRISTGCTGILISPRHVLTAAHCVHDQKDYVKQTKDLKIGLLKDK------------------STYEWLGVKNIKLSKGWIEGGQRN-GPFYDYALLKLSRKHRRPYIRISISEEKHHGSGERISFSGFDDDKPTGTMWYRSCTVVEDDRTFLYHYCDAQPGSSGSGVYSWVFDEETGRWERELVGVFSGNRWRTYDEFYIRVKNFNVAVRLTRYKYAQICKWL 1354
+YG D R F +F L P+ +V++STGCTG L++ +HVLTAAHC+HD K YVK T+ L++G LK K ++W+ VK + KGWI+G + G YDYALL+L + H+R +++I +S G RI FSG+D+D+P G + YR C V ++ LY CDAQPG+SGSGVY ++ + +WER+++G+FSG++W + ++FNVAVR+T KYAQIC W+
Sbjct: 129 QIYGYDSR-FSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKFKDGGRGANDSTSAMPEQMKFQWIRVKRTHVPKGWIKGNANDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRP-GNLVYRFCDVKDETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNG---SPQDFNVAVRITPLKYAQICYWI 373
The following BLAST results are available for this feature:
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