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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010417 ID=TCONS_00010417|Name=TCONS_00010417|organism=Clytia hemisphaerica|type=transcript|length=417bp
TGAAATTGTAAACATTGAAATGTACAATAATATCGCAACCAAATgaacaa
ttttcaatatttgaaatGAGTTTGTTTGGTTCAGTTGTTTTTCATGACCA
GCATGTATCGTGTTTACGTATTGTTTCATTTGTTCCTGTTTGTTTGGTTG
TTTACTTCATATGTGACGCATGCGCAAGATGAAGGGAAGAAAATTGTTTT
AGAAGCACACGTGGGTAAATTGTTTATCCAACAAACGAAACATTTTTGCA
AGGGTCATTCACCAAACATAAAATTGGCAACAGAACATATCCACCATTAT
TCTGAAGATGACGGACTACTTGCTTTCGTACCAACACACAATCAAGCTAA
TTTCCCGCTCTGTGGCAACGTTCATATTGAGGTTCAACAGACGATTAACG
AGCACCAGTTACCAATA Run BLAST on NCBI protein sequence of TCONS_00010417-protein >TCONS_00010417-protein ID=TCONS_00010417-protein|Name=TCONS_00010417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MTSMYRVYVLFHLFLFVWLFTSYVTHAQDEGKKIVLEAHVGKLFIQQTKH
FCKGHSPNIKLATEHIHHYSEDDGLLAFVPTHNQANFPLCGNVHIEVQQT
INEHQLPI Run BLAST on NCBI transcript from alignment at sc0000106:554330..556022+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010417 ID=TCONS_00010417|Name=TCONS_00010417|organism=Clytia hemisphaerica|type=transcript|length=1693bp|location=Sequence derived from alignment at sc0000106:554330..556022+ (Clytia hemisphaerica)
TGAAATTGTAAACATTGAAATGTACAATAATATCGCAACCAAATgaacaa
ttttcaatatttgaaatGAGTTTGTTTGGTTCAGTTGTTTTTCATGACCA
GCATGTATCGTGTTTACGTATTGTTTCATTTGTTCCTGTTTGTTTGGTTG
TTTACTTCATATGTGACGCATGCGCAAGATGAAGGGAAGAAAATTGTTTT
AGAAGCACACGTGGGTAAATTGTTTATCCAACAAACGAAACATTTTTGCA
AGGTGAACTATTCTTCTGATtagttgaaattaattttcatcGTGATTTAT
AAAGCGAATTATGTACAAGTCTAACTAAAAGTTGTACTGTTTTGCTGTTT
GTGTAAACTTTTTCGCAATAGATTAATTAGCCACTGACCTGGTTTCTACA
TTGAAtgcaaacaagtgatacttttatggacctacctggttatgcattaa
acacatatataattgatatatacgtgagcatgaccgttagtcaatcattc
agaacacaaatagtgacggtctattaaaattagttgtttgtttcttacaa
aaaacgtttagaaaccaaaatttcatgctcttgaaatattctttcatatt
taagacttcgtgagcaaaaaaaacatctatctNCTCGAAAATCAGGCACC
GTCAccttcgagggtttatagttctgcatctttgtgcaaaaaatcataaa
gaatgaaagagccaatctcgagaaaagctaatacttaaataattgataat
gtgcttataaaaaaatatcgaatttggccagtttttctgtaaaaacacgc
caagcaaccaaaatttcatctctaaacacacatatttttcaaaagtaagc
cgtcatgagcaaaaaaaacatcaatctcataaaaaagtgagtaatttgcc
taagaacattgatgcctgcttattaatagtgattcttatagatacacatg
cgttttttgacccaacacaatttttttgcaaaaatctgccatattttacc
tatgatggtaccctactttcatgcaaaaaatcagaaaaaattaatgatcc
aatttttcacaNtctgcttattaatagtgattcttatagataaacatgcg
ttttttgacccaacacaatttttttgcaaaaatcttccatattttaccta
tgatggtaccctactttcatgcaaaaaatcagaaaaaattaatgatccaa
tttttcacaaaatcgaaaaaacctgttttttggcccaaatttgcccaaaa
aattttttttcgaaaatcgggctccgtcacattctgCCCaccatcatttt
tcacttttgtaccaaaaatcaaaagattcctatgattcaatcctgagaaa
agctggtaacagacgaacgaacgaacacggttaatttataggacctctat
cccaccggggtaggtccaaaaagtgctCACTTATCCTGACTAGACTTTCA
TCACGAAGCCACAAACGACATTTCTTATTAATGATTGCAAGATCACACaa
tttcaaaagtgtttttcatcCATTTCAGGGTCATTCACCAAACATAAAAT
TGGCAACAGAACATATCCACCATTATTCTGAAGATGACGGACTACTTGCT
TTCGTACCAACACACAATCAAGCTAATTTCCCGCTCTGTGGCAACGTTCA
TATTGAGGTTCAACAGACGATTAACGAGCACCAGTTACCAATA Coding sequence (CDS) from alignment at sc0000106:554330..556022+ >TCONS_00010417 ID=TCONS_00010417|Name=TCONS_00010417|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000106:554330..556022+ (Clytia hemisphaerica)
ATGACCAGCATGTATCGTGTTTACGTATTGTTTCATTTGTTCCTGTTTGT
TTGGTTGTTTACTTCATATGTGACGCATGCGCAAGATGAAGGGAAGAAAA
TTGTTTTAGAAGCACACGTGGGTAAATTGTTTATCCAACAAACGAAACAT
TTTTGCAAGGGTCATTCACCAAACATAAAATTGGCAACAGAACATATCCA
CCATTATTCTGAAGATGACGGACTACTTGCTTTCGTACCAACACACAATC
AAGCTAATTTCCCGCTCTGTGGCAACGTTCATATTGAGGTTCAACAGACG
ATTAACGAGCACCAGTTACCAATAATGACCAGCATGTATCGTGTTTACGT
ATTGTTTCATTTGTTCCTGTTTGTTTGGTTGTTTACTTCATATGTGACGC
ATGCGCAAGATGAAGGGAAGAAAATTGTTTTAGAAGCACACGTGGGTAAA
TTGTTTATCCAACAAACGAAACATTTTTGCAAGGGTCATTCACCAAACAT
AAAATTGGCAACAGAACATATCCACCATTATTCTGAAGATGACGGACTAC
TTGCTTTCGTACCAACACACAATCAAGCTAATTTCCCGCTCTGTGGCAAC
GTTCATATTGAGGTTCAACAGACGATTAACGAGCACCAGTTACCAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010417-exon-sc0000106-1491911889:554330..554581 | TCONS_00010417-exon-sc0000106-1491911889:554330..554581 | Clytia hemisphaerica | exon |
| TCONS_00010417-exon-sc0000106-1510915933:554330..554581 | TCONS_00010417-exon-sc0000106-1510915933:554330..554581 | Clytia hemisphaerica | exon |
| TCONS_00010417-exon-sc0000106-1575043694:554330..554581 | TCONS_00010417-exon-sc0000106-1575043694:554330..554581 | Clytia hemisphaerica | exon |
| TCONS_00010417-exon-sc0000106-1491911889:555858..556022 | TCONS_00010417-exon-sc0000106-1491911889:555858..556022 | Clytia hemisphaerica | exon |
| TCONS_00010417-exon-sc0000106-1510915933:555858..556022 | TCONS_00010417-exon-sc0000106-1510915933:555858..556022 | Clytia hemisphaerica | exon |
| TCONS_00010417-exon-sc0000106-1575043694:555858..556022 | TCONS_00010417-exon-sc0000106-1575043694:555858..556022 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000106 | supercontig | sc0000106:554330..556022 + |
Blast
The following BLAST results are available for this feature:
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