TCONS_00010416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010416
Unique NameTCONS_00010416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010416 ID=TCONS_00010416|Name=TCONS_00010416|organism=Clytia hemisphaerica|type=transcript|length=1439bp
ACTAGTAAAGTtacattcaaattcaaatatcGTCAACTGTGAGAAATCCT
GTCTGTTTATAAAATCCAATAGATTTGTTTTTAAAGGGATTAATGGTGAA
ATGAAGGTGATTAGCCAACGGAATATCAATTAGAAAAGTCAATAATAGGA
TCATTTAGGATTTTCTCAAAGACAGATTTGACACAACGCAATAATAGGGC
CATTGTGTGGAGTGATATCCTGGTGGTAGGTTCTTGTATAACGATTGAGA
AGGGATCATTATAAACCTGCTCTTGCTTTAAAATAGGAGCATTTAATATC
GCACCCTTTGACACCGTTCTTATTTTTCATTGCGTGACAGTAATCTCAGC
TATTTAATGCATTCATTCATTTTCCGTACACATACAGTGCAGAGTACAGA
GCAGAGTGTTGAACGATAAAGGTGGGACAGACTCAACAGTAAGCAACAAA
CAAAATGTTCTCTAAAGTGAAATTTCTGGCTTTGCTGGTTGCTCTTGTAG
atctTTGTCATGGAAGCATCACAACGCACATCATTTCGAGCAAAGAAGTA
GTGAGAACGCACAATAAGCTTCGAACGAGAGTTGGAACACCTGATCTCTC
TGGTGATTTCTTCCTGGCAATCAAAGCGAAGGATTGTGCTTTCAAAATGC
TCCGTGATGACGACAACATTCTTGAACATCCTTGTGATCCTTCCAAAGAC
AAACAAGGAGAGAACATCTATTCTATCAAAAGTGATGGAAGGACATCAGA
GCAAGCACTTACAGTTTATGAGCGCGCTTTCAGAGTATGGGAATCAGAGG
AAAAAGACATTAACTTTGCTGACCCTGATTGGGCTTTCAAAATGGATTCA
ACAAGCACATCGAAACCTGTCTTTCATTACACCCAGCTTGTTTGGAGATC
AACGACGAAAGTAGGATGCGGTTTGGCAAGCAATGGAGGTGAATCTATTG
TTGTCTGTAGATATTCCCCCAAAGGAAACACAGCGACTGTTTCCTCGCTT
CAATACAATGTACCAGTACCACCACAAACAGCACCTGTGGCAGTACCATG
TGAAGACAACAAGGATTTTGCTGCAACACTGTGCAAAGATTTATCAGTTT
GCGCCAGTTTCGGTAGCATGTGCAAGAAATCGTGTGGACTATGCTGAGAT
ACCATCACTGCTTTTTTTCTTACTTGAAAATCTATTTTCGTCTcaataaa
ttttcatgaaaaggaATCTTGTATATTTTCATAATCAAACTATTTAATGT
ATCCTATTTAACTATTGCTTGTGACTTGCTGGATTTTCCAAAGAAAGAAT
ATTAGTGAATGAACTAAAACACGAAAGCTTACAAATTGCTTACCTCCACT
TTTTGGTGGCAATTCAATTATTGTACACGTTTGCTCCCAACCAATCCAAT
AttttgcatttctttcaaacactTTTTACCACCACATGC
Run BLAST on NCBI

transcript from alignment at sc0000106:538325..543065+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010416 ID=TCONS_00010416|Name=TCONS_00010416|organism=Clytia hemisphaerica|type=transcript|length=4741bp|location=Sequence derived from alignment at sc0000106:538325..543065+ (Clytia hemisphaerica)
ACTAGTAAAGTtacattcaaattcaaatatcGTCAACTGTGAGAAATCCT
GTCTGTTTATAAAATCCAATAGATTTGTTTTTAAAGGGATTAATGGTGAA
ATGAAGGTGATTAGCCAACGGAATATCAATTAGAAAAGTCAATAATAGGA
TCATTTAGGATTTTCTCAAAGACAGATTTGACACAACGCAATAATAGGGC
CATTGTGTGGAGTGATATCCTGGTGGTAGGTTCTTGTATAACGATTGAGA
AGGGATCATTATAAACCTGCTCTTGCTTTAAAATAGGAGCATTTAATATC
GCACCCTTTGACACCGTTCTTATTTTTCATTGCGTGACAGTAATCTCAGC
TATTTAATGCATTCATTCATTTTCCGTACACATACAGTGCAGAGTACAGA
GCAGAGTGTTGAACGATAAAGGTGGGACAGACTCAACAGTAAGCAACAAA
CAAAATGTTCTCTAAAGTGAAATTTCTGGCTTTGCTGGTTGCTCTTGTAG
GTGAGTCATTCCAAAATTAGTTGAGAAAGTTTTGTTTCAAGTTGTTTCAA
GTTACAAAACTATAATCGttgactttttttgaattttcagatctTTGTCA
TGGAAGCATCACAACGCACATCAGTAAGTGATTTCCTTCAGAAAGTTTTA
CTAGCTTTAAAGATATAGCTGTAACTTATAAGAATATATTCTAGGTCTTA
AATTACAAACTAAAACGTCAAAAAACAAATGAAtggtttaaccctattca
acctaggcttttaggggcggttcagaactagagGGGGCTGATCCTGttcc
accccttaacttttgatctagtgggcctttttagatgaaatttggcacac
aagatccttgtcacataaggtaacttttgacaaaaattttttttgatgac
gtcactcatcatgcccaaagtgagcaaaaaccgaaaatgtcctttgttct
tataaatagctattgtattctaacaaaggctttagaaaaaagttgcctga
gtataaaatgattaatttatcctaaatattcattAAATTACGGTTTTTAA
ACGATATAttagacataaaaaataaattagtattggaaaagtgttaattt
ttgtgacaccttactgtcagaaatgtcatcatgctcaaggtgtgaaattt
tttttttattttgaagctaaataaaagttaggaatttaccgaaaatttca
tggcaaaagctcttttatttcaggagctattaccaacaATTTGGCCTCca
aacagaaacagccccccccctcTAGGCCGATTTATAAATTTGAGCATCCG
AAGTTACTGTTACGGTTTATATTCTCTCAGTTTCGAGCAAAGAAGTAGTG
AGAACGCACAATAAGCTTCGAACGAGAGTTGGAACACCTGATCTCTCTGG
TGATTTCTTCCTGGCAATCAAAGCGAAGGATTGTGCTTTCAAAATGCTCC
GTGATGACGACAACATTCTTGAACATCCTTGTGATCCTTCCAAAGACAAA
CAAGGAGAGAACATCTATTCTATCAAAAGTGATGGAAGGACATCAGAGCA
AGCACTTACAGTTTATGAGCGCGCTTTCAGAGTATGGTTAGTACAAAATG
TCTCAATACTTTTCCTTGACTTATGGTCCGAACACctcttaaaaagcttt
tacaataTCAATCCATTCTCTTTTCGAAGATGATCTCAATCCTATTTAAA
ACGTGTACATCCTTTTTTCACCGAATCATACAAAAAGCCCGAGCTTAAAA
TACGCCGAAATAAAAGTttactaaattttgaaaaaatctcaacACGGAAT
GTACCTTTTATACATTAGGTAACAGTAAGCGGCTGAGACTTTTCTACCTC
TTAACTTTACAGGGAATCAGAGGAAAAAGACATTAACTTTGCTGACCCTG
ATTGGGCTTTCAAAATGGATTCAACAAGCACATCGAAACCTGTCTTTCAT
TACACCCAGGTAAAATAAATCGTTGGGGTTCCGTTACCGGTTATTTTTTC
ACTGGTCATATTATAGGATTTCGACAATGGAAACGAAAAGCCTAAATCGA
CTTTTAAGAACAGTTTTCTTTCTGAAATTCACGCTATAAACTGTAACTCA
TTGAGATCGTGATGTTCTCGGATACAGATTTTTGATTGAGATACAGTATC
TCTCCTGTAGTAGCCTGCAAATTTGTGTGAAGAGATAAATCATGGTAAAT
CGAGTAACAAATCAAGTTACAGCACTATACCTTGATGGTAATCGATTTAT
GTAGGATTTTTAAGGTAAGCCTTTTTGAAGTCATGAAAGAAGAACAGAAA
AAGTTTGATAATCAACCATAATATCACGTTTCAGCTTGTTTGGAGATCAA
CGACGAAAGTAGGATGCGGTTTGGCAAGCAATGGAGGTGAATCTATTGTT
GTCTGTAGATATTCCCCCAAAGGAAACACAGCGACTGTTTCCTCGCTTCA
ATACAATGTACCAGTACCACCACAAACAGCACCTGGTAAGTTTCTGATAG
TTATATAAAGTACAGAGAAGACGGGAAATTTTCGgctgatttttcaaaac
aatgcaACCTGCTAAAAGATTTTCGATAATAAAATGCTCTTGGAGGAgtg
ataaaactttttttttacctATAACGTACTCAATCACACAATGAACGAAA
GAggaatttttagtttttgcaaACCATCAATCATGCAAGCCTTTTCTCAT
ATGTAGTTTGTTTTTCATCAACCTTTTGAGACAGCCAGTGTCAGATTTCT
CAGTATTTCAAAATGCGATGATATCTTACTAgatgtttgaaaaacaaaca
TATTTTTGATACTACAAAAAGTACGAGCAAGCCATCCTGCTACTTGTTGG
AATAGAATCAAGAATGAATGAATAAGTCAGTCCCAGGTTTAAACCCCAAA
CATCAATTACAAACCTATTCTGTGGCAAAAAAGAACACTGGCGCATGTAG
TAGAGACCTTTAATCTTTGGAGGCATTTTCCAATCTAGATACAATTATAC
ACTAGATTAACGATGCAATGTCCGAGTGGTCAGCGCCTCAAACCAGTGCT
TCGTGGTTCACACCCCCGACCTCTCTATTCAGTTCCAGCCGTGTACCctg
tgaaaacaatcgatgaGACTATCTAAAAGTCCTAAATTACTGGTCTATCC
ACGTAAAATTTATCTAACTACCTGCAATAAGTACCGGGTTGGAGAGAGAC
AGACTCTATCCAGAAAAGACACAAGATAGGAAAACTTAAAAAACTGGAGA
AATAGTGGAGGTGAAACAGGTGAAACAGGTCGTTTTTTGAATCTTTAAAA
TGAATAATTTGAGAAGCAATGCAACAAAAAGATAACAGCACGTGAAGGGA
AATTTGATGCGCGACTTTATGAAGAGGTATTACTTAATGACGAACAATAC
ACACTGACGTTTCCATAGTAACAAACAAATACTTCCAGAAAGAATGTTCA
TCAGTAAAAAATTAAGCTTAcattaaaactttttcattcCCGGGGAATTT
TCTAATCGCAaaattaaaatgacaaaaaattttaTGGATTTAAGAAAGGT
TTGTTAGCTTCTCCTTATCTGGAACCCATTGTTTGAACTTTTGTTCGCAG
TTTCTCGCTGGTCACGATAAAAGCAGCAGAAACATAACTCAAAATATACT
GGGAAAGCTTCCccagaaaatgagaaaaatacaCTGGACTTACAGTATTC
AACCTTTTATATAGACGCATCAAACTTTAACTTATCAAGCTTAAAACTTT
GCAAGGGGGTTTATCTCCATCCATCCATTCTACCAGCACCACAAAAGGGC
TGTTATGAATGTGTTGATCCAAATATTTCCAGTATAaaacattgagttta
aaacccGCCGACGGGctagaatctttaacctttcccatgcaaaaaaattg
aagccttaaagtttttcgtcacttttaaccctttaagtgcacTTAATTTA
ATTTCCCttacctaccccccccccttagccGCCGCCCACCCTGTCCTTCC
TAAATCCTATAAACGACCATCTAGCTCCTTCTAGAtcaagcctttaaagt
ttgagctagcgattttctttaaaaaacttagaaaaaaatgaccgtggcac
ttaaatgGTTAAAATCTggcgctttctttgttttcgcacGCCATTTTTCG
AAATCCGGAGACTATAATactttcaatccagcgtttgtgtTAAAACCACA
ATGGTCGTGTTTTTTTATGGGagataagtggcttcattttccaTCTACGC
GTTCAATCTCTAGCCCCTTCAGGGTTTTGAATTCGATGGTCCAAAGCATC
CCTAAATTCTAATACTGTAATTTTTCTCCACCCTTCCAGTGGCAGTACCA
TGTGAAGACAACAAGGATTTTGCTGCAACACTGTGCAAAGATTTATCAGT
TTGCGCCAGTTTCGGTAGCATGTGCAAGAAATCGTGTGGACTATGCTGAG
ATACCATCACTGCTTTTTTTCTTACTTGAAAATCTATTTTCGTCTcaata
aattttcatgaaaaggaATCTTGTATATTTTCATAATCAAACTATTTAAT
GTATCCTATTTAACTATTGCTTGTGACTTGCTGGATTTTCCAAAGAAAGA
ATATTAGTGAATGAACTAAAACACGAAAGCTTACAAATTGCTTACCTCCA
CTTTTTGGTGGCAATTCAATTATTGTACACGTTTGCTCCCAACCAATCCA
ATAttttgcatttctttcaaacactTTTTACCACCACATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005856XLOC_005856Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010416-exon-sc0000106-1491911889:538325..538824TCONS_00010416-exon-sc0000106-1491911889:538325..538824Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1510915933:538325..538824TCONS_00010416-exon-sc0000106-1510915933:538325..538824Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1575043694:538325..538824TCONS_00010416-exon-sc0000106-1575043694:538325..538824Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1491911889:538915..538947TCONS_00010416-exon-sc0000106-1491911889:538915..538947Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1510915933:538915..538947TCONS_00010416-exon-sc0000106-1510915933:538915..538947Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1575043694:538915..538947TCONS_00010416-exon-sc0000106-1575043694:538915..538947Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1491911889:539655..539910TCONS_00010416-exon-sc0000106-1491911889:539655..539910Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1510915933:539655..539910TCONS_00010416-exon-sc0000106-1510915933:539655..539910Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1575043694:539655..539910TCONS_00010416-exon-sc0000106-1575043694:539655..539910Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1491911889:540187..540283TCONS_00010416-exon-sc0000106-1491911889:540187..540283Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1510915933:540187..540283TCONS_00010416-exon-sc0000106-1510915933:540187..540283Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1575043694:540187..540283TCONS_00010416-exon-sc0000106-1575043694:540187..540283Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1491911889:540659..540809TCONS_00010416-exon-sc0000106-1491911889:540659..540809Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1510915933:540659..540809TCONS_00010416-exon-sc0000106-1510915933:540659..540809Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1575043694:540659..540809TCONS_00010416-exon-sc0000106-1575043694:540659..540809Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1491911889:542664..543065TCONS_00010416-exon-sc0000106-1491911889:542664..543065Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1510915933:542664..543065TCONS_00010416-exon-sc0000106-1510915933:542664..543065Clytia hemisphaericaexon
TCONS_00010416-exon-sc0000106-1575043694:542664..543065TCONS_00010416-exon-sc0000106-1575043694:542664..543065Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:538325..543065 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.228373	0.310894	12.5933	10.5576	6.00126	8.73773	0.116811	0.957824	15.542	17.309	1.93693	2.62036	1.24889	2.10034	1.00239	0.894611	20.2696	15.4841	0	0.641641
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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