TCONS_00010414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010414
Unique NameTCONS_00010414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length766

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010414 ID=TCONS_00010414|Name=TCONS_00010414|organism=Clytia hemisphaerica|type=transcript|length=766bp
AGTCACATGACCATAGACCCAATCATCTACAAGAGCTCCTTTGCGTTGCC
AGACCATTTTGCCAAGTTTCGTGGAAGATTGTGTTTGGTAAAGGTTGAAT
GCGCCAACGTGTTGACCGAACATGTGATACCAGAATCGCACGCAAACGGA
ATCACCTCCGGACGTGAAAGCGATTCTTGGTGAGCGTAGGTTAGCTGTTG
CGTTTTGTTTGGAGAATGAGGTTTCCACATAAGCATAGTATCCTTGTTCG
TTGCCTTGAGTGTGGTCGACTTTAGGTCCTGTACCCCAACTGCCTGTTTC
ACCTTTGTGGCGTTGCCAGTTCAAATTATCACCAGCCATGTTGGTGAAAG
AGCAGAAGTTCTTTTCAAAGTTACAATCGTAGATGGAAGGTTTAGGTGTG
GTGGGTGGAGCCATGGTGGTTGGGAAATCAGTTGGTTTGCTGAGTGGGTT
GTAACATTTGGGTCCATTGGCAGAAGCGTCATAACAACACCCTCGTTTAC
CGCAATAGTAGCTTGAGATTCCGACATATCCACATTGTGTTCTTGCGACA
ACCGGCACCGCAGCACAAGTTCCTGGATGTTGGAAACAGCTCGGTAATCC
TTGGTCTTTCATCGTGTCGTCATAGCAACAACCATAATTGATGACGCATG
TGCTTGCTGTAACAGTACTTGGTCCACATGATACGCGAGCAGTGGCAGGG
ACAGAAGAACACAATCCGACACAGTTTCCTTCTTTTACATTGATGTCGTC
AAGTGAAATGTCACCT
Run BLAST on NCBI

transcript from alignment at sc0000106:496651..497481+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010414 ID=TCONS_00010414|Name=TCONS_00010414|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at sc0000106:496651..497481+ (Clytia hemisphaerica)
AGTCACATGACCATAGACCCAATCATCTACAAGAGCTCCTTTGCGTTGCC
AGACCATTTTGCCAAGTTTCGTGGAAGATTGTGTTTGGTAAAGGTTGAAT
GCGCCAACGTGTTGACCGAACATGTGATACCAGAATCGCACGCAAACGGA
ATCACCTCCGGACGTGAAAGCGATTCTTGGTGAGCGTAGGTTAGCTGTTG
CGTTTTGTTTGGAGAATGAGGTTTCCACATAAGCATAGTATCCTTGTTCG
TTGCCTTGAGTGTGGTCGACTTTAGGTCCTGTACCCCAACTGCCTGTTTC
ACCTTTGTGGCGTTGCCAGTTCAAATTATCACCAGCCATGTTGGTGAAAG
AGCAGAAGTTCTTTTCAAAGTTACAATCGTAGATGGAAGGTTTAGGTGTG
GTGGGTGGAGCCATGGTGGTTGGGAAATCAGTTGGTTTGCTGAGTGGGTT
GTAACATTTGGGTCCATTGGCAGAAGCGTCATAACAACACCCTCGTTTAC
CGCAATAGTAGCTTGAGATTCCGACATATCCACATTGTGTTCTTGCGACA
ACCGGCACCGCAGCACAAGTTCCTGGATGTTGGAAACAGCTCGGTAATCC
TTGGTCTTTCATCGTGTCGTCATAGCAACAACCATAATTGATGACGCATG
TGCTTGCTGTAACGGTGCTTGGTCCACATGATACGCGAGCAGTGGCAGGG
ACAGAAGAANACATGTGCTTGCTGTAACAGTACTTGGTCCACATGATACG
CGAGCAGTGGCAGGGACAGAAGAACACAATCCGACACAGTTTCCTTCTTT
TACATTGATGTCGTCAAGTGAAATGTCACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005855XLOC_005855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010414-exon-sc0000106-1491911889:496651..497297TCONS_00010414-exon-sc0000106-1491911889:496651..497297Clytia hemisphaericaexon
TCONS_00010414-exon-sc0000106-1510915933:496651..497297TCONS_00010414-exon-sc0000106-1510915933:496651..497297Clytia hemisphaericaexon
TCONS_00010414-exon-sc0000106-1575043694:496651..497297TCONS_00010414-exon-sc0000106-1575043694:496651..497297Clytia hemisphaericaexon
TCONS_00010414-exon-sc0000106-1491911889:497363..497481TCONS_00010414-exon-sc0000106-1491911889:497363..497481Clytia hemisphaericaexon
TCONS_00010414-exon-sc0000106-1510915933:497363..497481TCONS_00010414-exon-sc0000106-1510915933:497363..497481Clytia hemisphaericaexon
TCONS_00010414-exon-sc0000106-1575043694:497363..497481TCONS_00010414-exon-sc0000106-1575043694:497363..497481Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:496651..497481 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.448819	0.217312	0	0	0.268675	0.0411886	1.69679e-07	1.45628	2.03597	0.610008	0.373902	0.111267	4.01529	7.51008	0.0181546	5.7464	2.03972	0.88888	9.05677	9.71572	5.23124	1.27657	0	0	2.5491	4.1999	0.0508533	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000519P_trefoil_dom
IPR000998MAM_dom
IPR017957P_trefoil_CS
IPR013320ConA-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
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BLAST of TCONS_00010414 vs. Swiss-Prot (Human)
Match: MALR1 (MAM and LDL-receptor class A domain-containing protein 1 OS=Homo sapiens GN=MALRD1 PE=1 SV=4)

HSP 1 Score: 82.4185 bits (202), Expect = 2.098e-17
Identity = 43/125 (34.40%), Postives = 67/125 (53.60%), Query Frame = -2 
Query:    4 CNFEKNFCSFTNMAGDNLNWQRHKGETGSWGTGPKVDHTQGNEQGYYAYVETSFSKQ-NATANLRSPRIAFTSGGDSVCVRFWYHMFGQHVGAFNLYQTQSSTKLGKMVWQRKGALVDDWVYGHV 375
            CNFE   C++   A D+ +W R +G T +  TGP  D+T G  +G+Y Y+E+S  +    +A L SP I   +       RF+YHMFG+ +    +YQ   S   G+++WQ  G   + W+  H+
Sbjct:  865 CNFETGICNWEQDAKDDFDWTRSQGPTPTLNTGPMKDNTLGTAKGHYLYIESSEPQAFQDSAALLSP-ILNATDTKGCTFRFYYHMFGKRIYRLAIYQRIWSDSRGQLLWQIFGNQGNRWIRKHL 988
The following BLAST results are available for this feature:
BLAST of TCONS_00010414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MALR12.098e-1734.40MAM and LDL-receptor class A domain-containing pro... [more]
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