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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010412 ID=TCONS_00010412|Name=TCONS_00010412|organism=Clytia hemisphaerica|type=transcript|length=530bp
CTTCAATTATTTGACATTGTTCACCGCGAACAGAAAAATGTACATttgta
aaagaaaacttttgatgattctTGCATATCAATTACTTGTTTTGACATTT
GTGGTTGTTAATGGGGATTTGAGCGAGGACATCGCGCGCTTCCGTGATAC
GTTCACGTACGAACATTACATCAACAATCGCGATGCAGAGGAGATGGCGC
TGGTATTCCTGCAACTTGATGAACAACAACTTGAAgattttgaagaagaa
gaaaaattaaagcGTCAATTGGAAAATTTACCTATTGAAATGAGAAAGCA
GATGAAGATGATTAGAGAGCAAATCATGAGGGAAGTGGTTGAGCTAATTC
TTCCTGAGCATGTCGAGGAAGCAGATAAGGAAGATAGCCGAGACGAACAA
ATCCAAGAATTGTTTAATCTTGACCCAAGCACTCAGTATGAAGTTGCTTT
GCAAAGTAACGTTTTACGTAATACAGCTGATGAGGAGCCTAAGAATCCAA
TTCGAATTGAACCTTATTGAACTGAAGAAC Run BLAST on NCBI protein sequence of TCONS_00010412-protein >TCONS_00010412-protein ID=TCONS_00010412-protein|Name=TCONS_00010412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
FNYLTLFTANRKMYICKRKLLMILAYQLLVLTFVVVNGDLSEDIARFRDT
FTYEHYINNRDAEEMALVFLQLDEQQLEDFEEEEKLKRQLENLPIEMRKQ
MKMIREQIMREVVELILPEHVEEADKEDSRDEQIQELFNLDPSTQYEVAL
QSNVLRNTADEEPKNPIRIEPY Run BLAST on NCBI transcript from alignment at sc0000106:459529..462090+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010412 ID=TCONS_00010412|Name=TCONS_00010412|organism=Clytia hemisphaerica|type=transcript|length=2562bp|location=Sequence derived from alignment at sc0000106:459529..462090+ (Clytia hemisphaerica)
CTTCAATTATTTGACATTGTTCACCGCGAACAGAAAAATGTACATttgta
aaagaaaacttttgatgattctTGCATATCAATTACTTGTTTTGACATTT
GTAAGTaatattttgtccagttttgtCACAAAGGGCAGAATAAAAGAGCC
TACGAAAAAGGGAGAGTGATATTTCTAGAGTGTACTGGAATGTGTTTTCA
AGCTcccctttttccttttttacttTAAGATTATCCGACAGTTTCCAGAA
TGGAAGGAggagaaagaaatttttgaaaatgtgaatgTGAAAACTTCTCT
TCATTAAATAGAAAGTaataagattttccaaaaattgtttACTTTTACAG
CCTTAGTTTACTTTCTTTCCTGACGACCCTTGTAGCTGCTTGCATGCATT
TTGGGAAACCTGAAAGTCTTAgagagataaaaaatttttgCGTAAAATAT
TACCTAGAAACAAAAACAGCGGGAAAAGTGACCGGAAATAGTTCAGACCG
TAACGGACCGTAGATTTGTGTACCTTTACTCCTCTAATCGGAACCTGCAG
AAACTTTATACTATAGTATAGGGCTCACTCGACGGAGGAAGCCTAATTAT
AATATTTGGAATCCTTTAAGAAAAAtcataggcttctgctcatcctctag
cgaaaaaagtttcttatagaggtGGTTTGGGAATAAACTAGAAAAATCAG
GGTACTTTTTTCAAACTAACAACAGCTTTAGaccaaaatttttaatattt
ttagtgCTCACCGCGAAatgttcatttttgattttgaaatgaaagacCAT
GTCACCATTAAAATAGTATATTTAGGTCAATTATGATAAAAAATGCACCA
ATTTTCAGAAATCACTTCTAATATGATAATTTTATGACATTTgataataa
aattgaaaaatgatttgGGGGTTTAAACCGGAGGAAATTacgaagaaaaa
ataattttagccggtttttagcatttttgagCTTATTTCCTGAATTAACT
ATCAATAAAAACGATTCACTGGgtgaaataagagatttccaatcctgaaa
atatcttgaaaatatgataatatttccatatacatttgtaaatatggtaa
tatgacttttctatagttccaaagttgtggaaatattaaatttcatgata
tttccaattctgaaattcattaaaacatcatattttcaagatatttccaa
ttggaaatattttgaaaatatgcgatatttcagatttggaaatatcatga
aatatggtatttccacaacttttgaaatatagaaaagtcatatttccgtA
TTTACAAAAGtaaatggaaatatcatattttcaataaaTGGAAATATCAT
ACTTTCAAtaaatggaaatatcatattttcaataaatggaaatatcatat
tttcaagatatttccaggataggaaatctcttatttcgcccagtgattGT
TATCCAGGAAGAATTTTGTATTTCGACCAAACTTATCCGAAAATTTTGAC
TTCTTGAAATTAGTATTCGTCAAAGCAACAGCTCACGCAAAACTTCCCTA
GGTATTTGAACTTCAGCTATTCGAGCTTTTTGGGAGATCAATTTGCAAAT
CAACCCAGGctgaaattttggtgggaaaaagggttttcattttttgagct
cACAGCCAAAAAAGTATACTCGAGTGCTATCGTTGGATCTCCcatgtagg
atttgaagccacaGAATTTAACGAATATCAGACGCAGAAACAAAGGGAGG
TGCATCCGTTCATCCGGCTTGTAATTCAATGTTTCCAGCAGCAAAACCGT
CAGTAGGAGTTTTCCTTCACAACAACAGAACAGAGGTGTCAGTGGTACAC
AACTTATTTGTATCTTACTTttcgccatcttgttttcagGTGGTTGTTAA
TGGGGATTTGAGCGAGGACATCGCGCGCTTCCGTGATACGTTCACGTACG
AACATTACATCAACAATCGCGATGCAGAGGAGATGGCGCTGGTATTCCTG
CAACTTGATGAACAACAACTTGAAgattttgaagaagaagaaaaattaaa
gcGTCAATTGGAAAATTTACCTATTGAAATGAGAAAGCAGATGAAGATGA
TTAGAGAGTAAGTTGTTTGATATTGCGTCTGGTGTTTTTCCATATTCAGC
CCTCTGTCTTCTTTAGCAAGCGTTGGATAAGAAACAAAATGTGATCGACC
AAATATTCTTCATGCTggataaaaattcattttggtCTAACTTAAAACAA
TGCGAGGGATGGCGCACGTTACCATGTTATTGAGAGAAAGTCTGAATTCG
TTTTGAACGACAGCATGAAATTTAAgtctttgttaaaaaatttgtttcag
GCAAATCATGAGGGAAGTGGTTGAGCTAATTCTTCCTGAGCATGTCGAGG
AAGCAGATAAGGAAGATAGCCGAGACGAACAAATCCAAGAATTGTTTAAT
CTTGACCCAAGCACTCAGTATGAAGTTGCTTTGCAAAGTAACGTTTTACG
TAATACAGCTGATGAGGAGCCTAAGAATCCAATTCGAATTGAACCTTATT
GAACTGAAGAAC Coding sequence (CDS) from alignment at sc0000106:459529..462090+ >TCONS_00010412 ID=TCONS_00010412|Name=TCONS_00010412|organism=Clytia hemisphaerica|type=CDS|length=1557bp|location=Sequence derived from alignment at sc0000106:459529..462090+ (Clytia hemisphaerica)
TTCAATTATTTGACATTGTTCACCGCGAACAGAAAAATGTACATttgtaa
aagaaaacttttgatgattctTGCATATCAATTACTTGTTTTGACATTTG
TGGTTGTTAATGGGGATTTGAGCGAGGACATCGCGCGCTTCCGTGATACG
TTCACGTACGAACATTACATCAACAATCGCGATGCAGAGGAGATGGCGCT
GGTATTCCTGCAACTTGATGAACAACAACTTGAAgattttgaagaagaag
aaaaattaaagcGTCAATTGGAAAATTTACCTATTGAAATGAGAAAGCAG
ATGAAGATGATTAGAGAGCAAATCATGAGGGAAGTGGTTGAGCTAATTCT
TCCTGAGCATGTCGAGGAAGCAGATAAGGAAGATAGCCGAGACGAACAAA
TCCAAGAATTGTTTAATCTTGACCCAAGCACTCAGTATGAAGTTGCTTTG
CAAAGTAACGTTTTACGTAATACAGCTGATGAGGAGCCTAAGAATCCAAT
TCGAATTGAACCTTATTGATTCAATTATTTGACATTGTTCACCGCGAACA
GAAAAATGTACATttgtaaaagaaaacttttgatgattctTGCATATCAA
TTACTTGTTTTGACATTTGTGGTTGTTAATGGGGATTTGAGCGAGGACAT
CGCGCGCTTCCGTGATACGTTCACGTACGAACATTACATCAACAATCGCG
ATGCAGAGGAGATGGCGCTGGTATTCCTGCAACTTGATGAACAACAACTT
GAAgattttgaagaagaagaaaaattaaagcGTCAATTGGAAAATTTACC
TATTGAAATGAGAAAGCAGATGAAGATGATTAGAGAGCAAATCATGAGGG
AAGTGGTTGAGCTAATTCTTCCTGAGCATGTCGAGGAAGCAGATAAGGAA
GATAGCCGAGACGAACAAATCCAAGAATTGTTTAATCTTGACCCAAGCAC
TCAGTATGAAGTTGCTTTGCAAAGTAACGTTTTACGTAATACAGCTGATG
AGGAGCCTAAGAATCCAATTCGAATTGAACCTTATTGATTCAATTATTTG
ACATTGTTCACCGCGAACAGAAAAATGTACATttgtaaaagaaaactttt
gatgattctTGCATATCAATTACTTGTTTTGACATTTGTGGTTGTTAATG
GGGATTTGAGCGAGGACATCGCGCGCTTCCGTGATACGTTCACGTACGAA
CATTACATCAACAATCGCGATGCAGAGGAGATGGCGCTGGTATTCCTGCA
ACTTGATGAACAACAACTTGAAgattttgaagaagaagaaaaattaaagc
GTCAATTGGAAAATTTACCTATTGAAATGAGAAAGCAGATGAAGATGATT
AGAGAGCAAATCATGAGGGAAGTGGTTGAGCTAATTCTTCCTGAGCATGT
CGAGGAAGCAGATAAGGAAGATAGCCGAGACGAACAAATCCAAGAATTGT
TTAATCTTGACCCAAGCACTCAGTATGAAGTTGCTTTGCAAAGTAACGTT
TTACGTAATACAGCTGATGAGGAGCCTAAGAATCCAATTCGAATTGAACC
TTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010412-exon-sc0000106-1491911889:459529..459628 | TCONS_00010412-exon-sc0000106-1491911889:459529..459628 | Clytia hemisphaerica | exon |
| TCONS_00010412-exon-sc0000106-1510915933:459529..459628 | TCONS_00010412-exon-sc0000106-1510915933:459529..459628 | Clytia hemisphaerica | exon |
| TCONS_00010412-exon-sc0000106-1575043694:459529..459628 | TCONS_00010412-exon-sc0000106-1575043694:459529..459628 | Clytia hemisphaerica | exon |
| TCONS_00010412-exon-sc0000106-1491911889:461418..461635 | TCONS_00010412-exon-sc0000106-1491911889:461418..461635 | Clytia hemisphaerica | exon |
| TCONS_00010412-exon-sc0000106-1510915933:461418..461635 | TCONS_00010412-exon-sc0000106-1510915933:461418..461635 | Clytia hemisphaerica | exon |
| TCONS_00010412-exon-sc0000106-1575043694:461418..461635 | TCONS_00010412-exon-sc0000106-1575043694:461418..461635 | Clytia hemisphaerica | exon |
| TCONS_00010412-exon-sc0000106-1491911889:461879..462090 | TCONS_00010412-exon-sc0000106-1491911889:461879..462090 | Clytia hemisphaerica | exon |
| TCONS_00010412-exon-sc0000106-1510915933:461879..462090 | TCONS_00010412-exon-sc0000106-1510915933:461879..462090 | Clytia hemisphaerica | exon |
| TCONS_00010412-exon-sc0000106-1575043694:461879..462090 | TCONS_00010412-exon-sc0000106-1575043694:461879..462090 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000106 | supercontig | sc0000106:459529..462090 + |
Blast
The following BLAST results are available for this feature:
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