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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010411 ID=TCONS_00010411|Name=TCONS_00010411|organism=Clytia hemisphaerica|type=transcript|length=1114bp
TTTTGTTTCTGTTTAATTAAATTATATTGTTATCAGTAATGACGACATGC
TGACGTTGTGCCAAGAGTCATTTGTGTGGAGAAATATGTGATCCTTTTAA
TGAGTTTTTAATTGCAATTCAATTAGCGATGCTTTTAACCATGCAGTAAT
TTAATATTTGATGATCATGTGAAACAGAATATGGAATCACAAGTGTTCTC
AGAGCAGAAGAGTAAAGATCGCTAACTAAGTATTtagtttttgaaacatt
tcaaaaattaagaaaaatatggCATCGATGGATAAAGCTTGTTACTGTTT
CATTTGGTTGATTTTAACTTGCGGTACGATATGTTTGCTTACTGGCGCAG
GGACTTCTTACTGGCTGAGTAACAACAATAACGATGGTCACCAAGGAATC
TTTCAGAAATGTGAGCCGGCTTCGATACTTGCCAGTGGGTGTGAGACTTC
GGTCATCAAGTTTTGGCAAGCAAAAGTTCCCGAAGCAGCCCGTCTATGTT
TGATTGCCAGTATGGGTTTACTTGTTTTGGCGACCCTGCTGAGTTGTATT
TCACCATGTATTGAGAAAGATATCTCCCTCGCTTATGTCTTGATGGACCT
GGGTGCATTTCTGACGGCTTTAGCAGCTTTGGTTTTGTACACAGTTGAAT
ATAAAGATGTCGCTGATAAAAGCTGGGGATGGAGTTACATTTTGGCATGG
GTTGGTTGCTCGCTTCACGCTCTTGGTGTTACTCTTCTCTGCTGGGCGGG
ATGCGTAGAAGCGGAATAAGCTTTGATAATGTCATTCGTTTAGTGAGAGT
GGAGAAAGGTAGAATCTCCTTCATCTTGAATTCTATCCAAATATTTAAAT
GTGCGAACTTAGGGTTTTgccttttaaattaaaattatttcagTGATATT
GTTGCTTTGACTGGGACTATAGTCGAAATTTTTAGAGATTATagagcatt
tttattttgtaaatttatcAACATATTtaagttttgtatttttggtCGGT
GCAAGGTCGCTGAATTTTTGGAACCACTTGTGGTATATTTTTGTTACACT
TGTAAATaaatatcaaagaaaagaaatatctATAATAATATTTGAATACT
CCATGGCATAAATC Run BLAST on NCBI protein sequence of TCONS_00010411-protein >TCONS_00010411-protein ID=TCONS_00010411-protein|Name=TCONS_00010411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MASMDKACYCFIWLILTCGTICLLTGAGTSYWLSNNNNDGHQGIFQKCEP
ASILASGCETSVIKFWQAKVPEAARLCLIASMGLLVLATLLSCISPCIEK
DISLAYVLMDLGAFLTALAALVLYTVEYKDVADKSWGWSYILAWVGCSLH
ALGVTLLCWAGCVEAE Run BLAST on NCBI transcript from alignment at sc0000106:448298..450891+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010411 ID=TCONS_00010411|Name=TCONS_00010411|organism=Clytia hemisphaerica|type=transcript|length=2594bp|location=Sequence derived from alignment at sc0000106:448298..450891+ (Clytia hemisphaerica)
TTTTGTTTCTGTTTAATTAAATTATATTGTTATCAGTAATGACGACATGC
TGACGTTGTGCCAAGAGTCATTTGTGTGGAGAAATATGTGATCCTTTTAA
TGAGTTTTTAATTGCAATTCAATTAGCGATGCTTTTAACCATGCAGTAAT
TTAATATTTGATGATCATGTGAAACAGAATATGGAATCACAAGTGTTCTC
AGAGCAGAAGAGTAAAGATCGCTAACTAAGTATTtagtttttgaaacatt
tcaaaaattaagaaaaatatggCATCGATGGATAAAGCTTGTTACTGTTT
CATTTGGTTGATTTTAACTTGCGGTACGATATGTTTGCTTACTGGCGCAG
GGACTTCTTACTGGCTGAGTAACAACAATAACGATGGTCACCAAGGAATC
TTTCAGAAATGTGAGCCGGCTTCGATACTTGCCAGTGGGTGTGAGACTTC
GGTCATCAAGTTTTGGCAAGCAAAAGGTAAAAATAAGACTAAAAATCTAG
TGTAAAGGAAGAAGAATGAACAATAACCTTTTTAGCGATGAGCTTTTCGC
AAAGCTGGTATACTCttttttgataagaaaaatCTTATAAGAGCAATGAG
GCTCGAACTTGtcgaaaaaataacaaagttgAGCCTGGTATTGGAGAATT
TCAAGCGATTTGAAATTGACACGTATAATTTTGATTCGAAAAAATATCTT
CGATGATAAGAAGATTGCATGACCCTGTGAGGAAATGCAAACGTCAAACA
AACTTCCGTCCCTTCATTTGTCGATCCATTAATTGATGTCATAAGAGATC
ATTATTATCAAACAAGGAAAAAATGCCAATATCTAAAAGCCAATGACGCA
TTTTAAGCTTGATTTTCTTTTATGCAAATTTGATAATTTGTCTGACAAAT
TCTGAATCTTCAATCACAAtttcttttgtgttttcttAGTTCCCGAAGCA
GCCCGTCTATGTTTGATTGCCAGTATGGGTTTACTTGTTTTGGCGACCCT
GCTGAGTTGTATTTCACCATGTATTGAGAAAGATATCTCCCTCGCTTATG
TCTTGATGGACCTGGGTGCATGTAAGTATATCTTTCATATTGTTGGCGTT
GCATTTTTCAGCCCAAGGGGATGCCTTTTCTTTGGGTAGACATAAccatc
gaaagaggagcctccGAATTGATTTGTTTACTAAACCCCCAAAGGGTGGG
AAATNTGCCTTTTCTTTGGTTTGACATAAccatcgaaagaggagcctccG
AATGTATTTGTTTACTAAAGCCCCAAAGggtgggaaatgaagccactatt
tcccatccaaaacgcatAGCACACttactttttacaaaatcaattgattg
aaagtaaatctatcgctagattttgaaaaatgtaccACCCTTCGGGTTCT
GTTCTCGACAGGTTTCATGCATGCAGTATGCGGTTTGGGTGCTTCTTGAt
accaacaaaattttcatttttttcgatATTTCTGAATTACCTTATATTTG
TTTATCATATTGCGCTATGGTCAGTCGAAACAGAAAATATGCAATCCTTA
TATAACCACCGATGACTTCATATTTTTCTCTCCACCTTTTACCGCATAAT
GGTATACCAATAATTAGGAGTTGCATAATAGCAGAAGAGTAAATTCTTAT
AATATCTCCCCTGGAACCTTTTTTATATGTAGCTCAAAGTCGCGATCGAA
ATTCAACCAGTAACAAAAAGCACCCTTACAAACcgaattgaatcgaaata
aatATTGAAACTCCTTTATTCCCAGGgatgaaagtttttgtttgcTAACT
TCCCATCCATTAAATTACAAGACATTCactattcaaatatttttcaatcg
ctacTGGAGACCAGGCAGGGTGTACTTTCTTGTGTGACAGAAAATGCAAT
GAGACCTATAAGACCAACCTAGATAGCATTTACTTTATTAGGTGGAGGCT
GGTAAATTTATATCGGCTAGGACGGTTCAACGTTACTTTATTCGTGATTG
CGATAAGAGTGGATTTGTCTtagctttttttaaaaagccaTCTAAAACAA
ACTGGCAATTGAACTtcattttctcttctttctttcagTTCTGACGGCTT
TAGCAGCTTTGGTTTTGTACACAGTTGAATATAAAGATGTCGCTGATAAA
AGCTGGGGATGGAGTTACATTTTGGCATGGGTTGGTTGCTCGCTTCACGC
TCTTGGTGTTACTCTTCTCTGCTGGGCGGGATGCGTAGAAGCGGAATAAG
CTTTGATAATGTCATTCGTTTAGTGAGAGTGGAGAAAGGTAGAATCTCCT
TCATCTTGAATTCTATCCAAATATTTAAATGTGCGAACTTAGGGTTTTgc
cttttaaattaaaattatttcagTGATATTGTTGCTTTGACTGGGACTAT
AGTCGAAATTTTTAGAGATTATagagcatttttattttgtaaatttatcA
ACATATTtaagttttgtatttttggtCGGTGCAAGGTCGCTGAATTTTTG
GAACCACTTGTGGTATATTTTTGTTACACTTGTAAATaaatatcaaagaa
aagaaatatctATAATAATATTTGAATACTCCATGGCATAAATC Coding sequence (CDS) from alignment at sc0000106:448298..450891+ >TCONS_00010411 ID=TCONS_00010411|Name=TCONS_00010411|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at sc0000106:448298..450891+ (Clytia hemisphaerica)
atggCATCGATGGATAAAGCTTGTTACTGTTTCATTTGGTTGATTTTAAC
TTGCGGTACGATATGTTTGCTTACTGGCGCAGGGACTTCTTACTGGCTGA
GTAACAACAATAACGATGGTCACCAAGGAATCTTTCAGAAATGTGAGCCG
GCTTCGATACTTGCCAGTGGGTGTGAGACTTCGGTCATCAAGTTTTGGCA
AGCAAAAGTTCCCGAAGCAGCCCGTCTATGTTTGATTGCCAGTATGGGTT
TACTTGTTTTGGCGACCCTGCTGAGTTGTATTTCACCATGTATTGAGAAA
GATATCTCCCTCGCTTATGTCTTGATGGACCTGGGTGCATTTCTGACGGC
TTTAGCAGCTTTGGTTTTGTACACAGTTGAATATAAAGATGTCGCTGATA
AAAGCTGGGGATGGAGTTACATTTTGGCATGGGTTGGTTGCTCGCTTCAC
GCTCTTGGTGTTACTCTTCTCTGCTGGGCGGGATGCGTAGAAGCGGAATA
AatggCATCGATGGATAAAGCTTGTTACTGTTTCATTTGGTTGATTTTAA
CTTGCGGTACGATATGTTTGCTTACTGGCGCAGGGACTTCTTACTGGCTG
AGTAACAACAATAACGATGGTCACCAAGGAATCTTTCAGAAATGTGAGCC
GGCTTCGATACTTGCCAGTGGGTGTGAGACTTCGGTCATCAAGTTTTGGC
AAGCAAAAGTTCCCGAAGCAGCCCGTCTATGTTTGATTGCCAGTATGGGT
TTACTTGTTTTGGCGACCCTGCTGAGTTGTATTTCACCATGTATTGAGAA
AGATATCTCCCTCGCTTATGTCTTGATGGACCTGGGTGCATTTCTGACGG
CTTTAGCAGCTTTGGTTTTGTACACAGTTGAATATAAAGATGTCGCTGAT
AAAAGCTGGGGATGGAGTTACATTTTGGCATGGGTTGGTTGCTCGCTTCA
CGCTCTTGGTGTTACTCTTCTCTGCTGGGCGGGATGCGTAGAAGCGGAAT
AAatggCATCGATGGATAAAGCTTGTTACTGTTTCATTTGGTTGATTTTA
ACTTGCGGTACGATATGTTTGCTTACTGGCGCAGGGACTTCTTACTGGCT
GAGTAACAACAATAACGATGGTCACCAAGGAATCTTTCAGAAATGTGAGC
CGGCTTCGATACTTGCCAGTGGGTGTGAGACTTCGGTCATCAAGTTTTGG
CAAGCAAAAGTTCCCGAAGCAGCCCGTCTATGTTTGATTGCCAGTATGGG
TTTACTTGTTTTGGCGACCCTGCTGAGTTGTATTTCACCATGTATTGAGA
AAGATATCTCCCTCGCTTATGTCTTGATGGACCTGGGTGCATTTCTGACG
GCTTTAGCAGCTTTGGTTTTGTACACAGTTGAATATAAAGATGTCGCTGA
TAAAAGCTGGGGATGGAGTTACATTTTGGCATGGGTTGGTTGCTCGCTTC
ACGCTCTTGGTGTTACTCTTCTCTGCTGGGCGGGATGCGTAGAAGCGGAA
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010411-exon-sc0000106-1491911889:448298..448773 | TCONS_00010411-exon-sc0000106-1491911889:448298..448773 | Clytia hemisphaerica | exon |
| TCONS_00010411-exon-sc0000106-1510915933:448298..448773 | TCONS_00010411-exon-sc0000106-1510915933:448298..448773 | Clytia hemisphaerica | exon |
| TCONS_00010411-exon-sc0000106-1575043694:448298..448773 | TCONS_00010411-exon-sc0000106-1575043694:448298..448773 | Clytia hemisphaerica | exon |
| TCONS_00010411-exon-sc0000106-1491911889:449237..449368 | TCONS_00010411-exon-sc0000106-1491911889:449237..449368 | Clytia hemisphaerica | exon |
| TCONS_00010411-exon-sc0000106-1510915933:449237..449368 | TCONS_00010411-exon-sc0000106-1510915933:449237..449368 | Clytia hemisphaerica | exon |
| TCONS_00010411-exon-sc0000106-1575043694:449237..449368 | TCONS_00010411-exon-sc0000106-1575043694:449237..449368 | Clytia hemisphaerica | exon |
| TCONS_00010411-exon-sc0000106-1491911889:450386..450891 | TCONS_00010411-exon-sc0000106-1491911889:450386..450891 | Clytia hemisphaerica | exon |
| TCONS_00010411-exon-sc0000106-1510915933:450386..450891 | TCONS_00010411-exon-sc0000106-1510915933:450386..450891 | Clytia hemisphaerica | exon |
| TCONS_00010411-exon-sc0000106-1575043694:450386..450891 | TCONS_00010411-exon-sc0000106-1575043694:450386..450891 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000106 | supercontig | sc0000106:448298..450891 + |
Blast
The following BLAST results are available for this feature:
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