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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010393 ID=TCONS_00010393|Name=TCONS_00010393|organism=Clytia hemisphaerica|type=transcript|length=691bp
gttattttgacttttgtgaTTCATCATAAACATAGTAAACGAAGAAATAA
CAATGGAAGCAAACAAAATTCTACTGGCGATAGTTTTTCAAATCATAGTA
ACAAGTGCACCATCAACAGAATGTAAACCAAAGATGGCTGGTGATCGGGA
AGATCTTATCAGCAAAATCGCTACACAAATCTCTCAAGATGGAAAAATTA
GCGAGAAAAACAATAAACTACTACAAACGATAATGAAAGACCATCCTGGC
CAACCATGTCGTGCTGTTCCCTTCAAACAAACTGTTCGACATAAAGATTG
TTCACCAGTAGTTATTAACAATAATATGTGTTTGGGACAATGCATATCGC
GCACCGATCCTTCCGTCAACGGAGAACGTTCACAGAAAGTTAGCAAGTGT
GTTCCAACAAAAAACTTAAGAAGAGTAATCCCTTTTACGAACTGTGACGA
TGGAAAGGAACGTGTTAAAGAGGTCCACATAGTTGAGTCCTGTAGTTGTA
GGAGAGtaaaaacttaaatatttcCATTCGCTGGTGATAATGGCGACGTT
GCTGAATCTTTGTTTTAGAGACAGTTTCCACTGAATTAAGAATTGtaaat
attatttcaaaaatttttatttttgtaattaagTAAATCTTCTTCAagaa
ttttaagtttaaaatcAAGAATGTGCAAAGTTTAATCAAAG Run BLAST on NCBI protein sequence of TCONS_00010393-protein >TCONS_00010393-protein ID=TCONS_00010393-protein|Name=TCONS_00010393-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MEANKILLAIVFQIIVTSAPSTECKPKMAGDREDLISKIATQISQDGKIS
EKNNKLLQTIMKDHPGQPCRAVPFKQTVRHKDCSPVVINNNMCLGQCISR
TDPSVNGERSQKVSKCVPTKNLRRVIPFTNCDDGKERVKEVHIVESCSCR
RVKT Run BLAST on NCBI transcript from alignment at sc0000106:86743..88383+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010393 ID=TCONS_00010393|Name=TCONS_00010393|organism=Clytia hemisphaerica|type=transcript|length=1641bp|location=Sequence derived from alignment at sc0000106:86743..88383+ (Clytia hemisphaerica)
gttattttgacttttgtgaTTCATCATAAACATGTAAAGattcattgttt
tgttttgtgtcTAATTAATTGTCATATTTCTTTGCTAATGACCCTTCAAC
TGGACAATGACCTTTTGATTTAATGAGTAATTTTAAACAGTTTTGATTGC
TCTTTGTCTTCCTTACTACATCATTGAGCAGTTTATTTATGTATAAAATA
ATACTCCTACTGAGTGATGGTTACTGCAATCTGATGGGCTGGACCACTGG
TGATAAACAAACCTTAAAAAGACGAAATGTTGGCGTATTCTTCagataaa
tattttaatttgaaaGAGACCCTTATGTAGACATTCGAAAGTTTTTCTTA
CCTTTTGGAATTTGAAAGATCAGAAACGGACTCTCACAGTTTACTGCATA
TAACCAACACCCATGTTTGTTTTAGAGCCTTTTCACTTTCCCAGGAATGC
ACCTAAGCAAAGAGTGTTGCTTTTAGAATAACAGGAAAGCAAATATCGGT
AAGAATAAAAATTCCACTGCCATTGCACACACTAACAGCAGCTGGAGGTT
CGGTATACTTTTGGTCTGTAATTTGAAAGTATAGCTTTTATCTGTCTCTC
AAAACGGACATGAAAAGATGGCGGGTAAAGGAGAGGTTTAATCATCATTT
CTAATCACCTTATCTATTTAATTAGGCAATATTGGTTTTAGAGTCGTTTG
ATCAACAAAACCAAACTTAATTGTCATGATTATAATTGACGATCAATCTA
ACTTTTTTTACCTCCACTTAATTGCTCTTCAGCCTTCGGTTTGCTATAAA
AAGTGATACGCCACTTGCACTTCATTGCAAAAGAGCCAGTAGTTGACGAG
GCTCAGTAGATGCTCAACTTATAGAGTAGATAGTTTACAAGAAATTTATA
GGCTGTGCAAATCGTGAGTGCATTTCAATAATTTGACTTGAGGTTTAATA
ATAATCTAATAATCTCTTCCAAATATCTTTTAGAGTAAACGAAGAAATAA
CAATGGAAGCAAACAAAATTCTACTGGCGATAGTTTTTCAAATCATAGTA
ACAAGTGCACCATCAACAGAATGTAAACCAAAGATGGCTGGTGATCGGGA
AGATCTTATCAGCAAAATCGCTACACAAATCTCTCAAGATGGAAAAATTA
GCGAGAAAAACAATAAACTACTACAAACGATAATGAAAGACCATCCTGGC
CAACCATGTCGTGCTGTTCCCTTCAAACAAACTGTTCGACATAAAGATTG
TTCACCAGTAGTTATTAACAATAATATGTGTTTGGGACAATGCATATCGC
GCACCGATCCTTCCGTCAACGGAGAACGTTCACAGAAAGTTAGCAAGTGT
GTTCCAACAAAAAACTTAAGAAGAGTAATCCCTTTTACGAACTGTGACGA
TGGAAAGGAACGTGTTAAAGAGGTCCACATAGTTGAGTCCTGTAGTTGTA
GGAGAGtaaaaacttaaatatttcCATTCGCTGGTGATAATGGCGACGTT
GCTGAATCTTTGTTTTAGAGACAGTTTCCACTGAATTAAGAATTGtaaat
attatttcaaaaatttttatttttgtaattaagTAAATCTTCTTCAagaa
ttttaagtttaaaatcAAGAATGTGCAAAGTTTAATCAAAG Coding sequence (CDS) from alignment at sc0000106:86743..88383+ >TCONS_00010393 ID=TCONS_00010393|Name=TCONS_00010393|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000106:86743..88383+ (Clytia hemisphaerica)
ATGGAAGCAAACAAAATTCTACTGGCGATAGTTTTTCAAATCATAGTAAC
AAGTGCACCATCAACAGAATGTAAACCAAAGATGGCTGGTGATCGGGAAG
ATCTTATCAGCAAAATCGCTACACAAATCTCTCAAGATGGAAAAATTAGC
GAGAAAAACAATAAACTACTACAAACGATAATGAAAGACCATCCTGGCCA
ACCATGTCGTGCTGTTCCCTTCAAACAAACTGTTCGACATAAAGATTGTT
CACCAGTAGTTATTAACAATAATATGTGTTTGGGACAATGCATATCGCGC
ACCGATCCTTCCGTCAACGGAGAACGTTCACAGAAAGTTAGCAAGTGTGT
TCCAACAAAAAACTTAAGAAGAGTAATCCCTTTTACGAACTGTGACGATG
GAAAGGAACGTGTTAAAGAGGTCCACATAGTTGAGTCCTGTAGTTGTAGG
AGAGtaaaaacttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010393-exon-sc0000106-1491911889:86743..86775 | TCONS_00010393-exon-sc0000106-1491911889:86743..86775 | Clytia hemisphaerica | exon |
| TCONS_00010393-exon-sc0000106-1510915933:86743..86775 | TCONS_00010393-exon-sc0000106-1510915933:86743..86775 | Clytia hemisphaerica | exon |
| TCONS_00010393-exon-sc0000106-1575043694:86743..86775 | TCONS_00010393-exon-sc0000106-1575043694:86743..86775 | Clytia hemisphaerica | exon |
| TCONS_00010393-exon-sc0000106-1491911889:87726..88383 | TCONS_00010393-exon-sc0000106-1491911889:87726..88383 | Clytia hemisphaerica | exon |
| TCONS_00010393-exon-sc0000106-1510915933:87726..88383 | TCONS_00010393-exon-sc0000106-1510915933:87726..88383 | Clytia hemisphaerica | exon |
| TCONS_00010393-exon-sc0000106-1575043694:87726..88383 | TCONS_00010393-exon-sc0000106-1575043694:87726..88383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000106 | supercontig | sc0000106:86743..88383 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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