TCONS_00010390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010390
Unique NameTCONS_00010390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010390 ID=TCONS_00010390|Name=TCONS_00010390|organism=Clytia hemisphaerica|type=transcript|length=1244bp
TTTTGATTTCACTCACACCATTGGAAACCAGTGTTTTGATCTTCGTTTCA
TTTGTCTTATTTTACACAATGTACGACAAATTCACTGGTCGGCTGGTTCC
TTCAAATCTTTTACGGTTACTGACTTTCCAAGAAGGTGCTGACAAATTCC
TGGTTGAAATGAACAAAGCGCTGTCTCTATCTGGTCTTACtgtattggca
ttttcatttttcccgatctataaaaaacgtgtaagataTGCATTATTATG
GAGCGCTGTCGTCCAACTCTGGATTCACGCCGTGTATTCAACGCTGAAGT
ATTACGGAAGCAAAAACATTCCtcgaatttcaacatttttttattgGAAC
AGTGAACAGataaaaaagatttccattTTGCTTGGCATCATGGCGCAGGT
CGTCTTATCACTTGGATATTTCTCGTATATCGTGAAAAACAATACATAGA
AAAAGAAATGGCGCAAAAGAAATTATCTGGAGTGTTGAAGATGTATGTCG
CAGCAGGAAAAGCCGCCCCTTCGCCACCACTTGGTCCCGCCCTTGGGCAG
CGTGGTATCAATATCATGCAATTTTGTAAGGATTtcaacgaacgaacgaa
agatTACAAACAAGGAGTTCCCATACCAACCCGTGTCGTTTACAAGGACC
GCAAATTTGACTTTACGATCAGTCAGCCACCTGCAACCTACTTCTTGAAA
CAAGCTGCTGGTGTCGAAAAAGGCTCTTCCAACCCTGGTCGTGAGATGAT
TGGTTCCGTAACATTGAAACAGATTTACGAGATCGCCCTTGTCAAAGGAA
AAGATGAAGGTTTTAAGAATACAGACCTTCAAGGAGTTTGCAAATGTCTG
ATAGACTCTGCTCATAGTATGGGCATCGAAATAATCAACGACAGAAGTGA
AGACATGACGACGGAAGAATCTACTAGTGCTGTTGCAAGCTGATTTTCAT
TGtgtaattttgaatttcatttgGATTGTCGTGTGAATGTTTTTAGGTTC
ACTGACACTACAAAATGTTTTCGTGGCATCGATTTATTTCTTGAGTGGCA
ACATGATACAGTACCAGACACTAAGAATACTCCAATTAATCGTCGTCCAG
TTCAAACGCGATTTGTTGAATTAAAGGACTGGAATCGCTTGGCAAAAACT
GAACCTCTAGAAAACTAGAGTAAAAGATTTTATAAACGTATTGTATTATA
TAGTGGAGTCGAACTGTCTCAAACTTTTAGATTTGAATCTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00010390-protein

>TCONS_00010390-protein ID=TCONS_00010390-protein|Name=TCONS_00010390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MAQKKLSGVLKMYVAAGKAAPSPPLGPALGQRGINIMQFCKDFNERTKDY
KQGVPIPTRVVYKDRKFDFTISQPPATYFLKQAAGVEKGSSNPGREMIGS
VTLKQIYEIALVKGKDEGFKNTDLQGVCKCLIDSAHSMGIEIINDRSEDM
TTEESTSAVAS
Run BLAST on NCBI

transcript from alignment at sc0000106:41786..44607+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010390 ID=TCONS_00010390|Name=TCONS_00010390|organism=Clytia hemisphaerica|type=transcript|length=2822bp|location=Sequence derived from alignment at sc0000106:41786..44607+ (Clytia hemisphaerica)
TTTTGATTTCACTCACACCATTGGAAACCAGTGTTTTGATCTTCGTTTCA
TTTGTCTTATTTTACACAATGTACGACAAATTCACTGGTCGGCTGGTTCC
TTCAAATCTTTTACGGTTACTGACTTTCCAAGAAGGTGCTGACAAATTCC
TGGTTGAAATGAACAAAGCGCTGTCTCTATCTGGTCTTACtgtattggca
ttttcatttttcccgatctataaaaaacgtgtaagataTGCATTATTATG
GAGCGCTGTCGTCCAACTCTGGATTCACGCCGTGTATTCAACGCTGAAGT
ATTACGGAAGCAAAAACATTCCtcgaatttcaacatttttttattgGAAC
AGTGAACAGataaaaaagatttccattTTGCTTGGCATCATGGCGCAGGT
CGTCTTATCACTTGGATATTTCTCGTATATCGGTTGGTTCCAACTCTCCT
TATTCGGTCTTTCCTCCAGTATCTTGCATTTCTACACCATGGAAATTGAT
CATAAATATGTGTTGCGCGTTCGACCGTACGCCTACATTGTCTTCCCTGT
AACACTGCTCGCCTTTGTCTTTGGATGCAATTTATTTTAAGATGCAGAAG
AAAAGTTCTTTTGCGCATGGTTAAGTTTTGAACGTTTTTTTGTTGGATGA
TGAGATTTTTTTAGTGTATGTAATGTATAATGTTGCAGGTTACTGTGTAt
agtttaaaaatgaaataaaaaagtgtcgTATTTTCCGGTAACAATATTTA
ATGTCTTTTCCTGGAATTTTTGATTTGGACCATTTCAAAAATCTAATGAT
GTATTTGTTCTCAAATGCTTAATGAACAGTTTTCCACCTTATTTTTACAG
TGAAAAACAATACATAGAAAAAGAAATGGCGCAAAAGAAATTATCTGGAG
TGTTGAAGATGTATGTCGCAGCAGGAAAAGCCGCCCCTTCGCCACCACTT
GGTCCCGCCCTTGGGCAGGTTAGTCTTTTTGTATGAGTTATTATATTATG
ACATCCATGTGTGCCGTAGAATGCAGGATTGACTTTCCGAGCCCCACATC
ATTTAGACACGAGTTTGTTTCGCAGTTTATATTTGATAGAATGTGTTGAG
ACTGGGCTCGACTCTCTTTCAAATTATAAAGGCTACTTTAAGTAAAACCA
CAAGCAAAAATGCTAAACTTTTGAATACTTTTTGTTTCCCTCAAAACTCT
AAAGGGTAAAAGCTATTGCAATGTTATTTCAGCGTGGTATCAATATCATG
CAATTTTGTAAGGATTtcaacgaacgaacgaaagatTACAAACAAGGAGT
TCCCATACCAACCCGTGTCGTTTACAAGGTGAGTTTGCTCAACCGTATCA
TGTGATTTTGTACTCAGTTTCCCTCCCTCTCATCCAGTTCATTGGGTATC
GAATTGTACAGTCTTCCATTTCTAAGTCTTCAATGGACGGAAAAGTAAGG
AAAGTTTAAATTTCAGATTATTCCTCTCCAATACTCTAACGTAGGTAGAG
CACAGTAAAGTTTCAGGACTAAAACCAACTTAGTATATGTAAttacatga
taacgagtgcaattcggttataattgcacgagtgatttttttgttattaa
ttttccgagtccgaaaaaacaaaaaaatcacgagtgcaattttcgaattg
aacgagttattatgtgattacgagctaatcgcacaatggctgtcACTACT
TTTCCCAGtaaggaaagtaaattacagaaattacactgagagttttttct
cttctctctgtgtctttcttttattgttgtttattggttttctttctcac
aaaataaatttcgaatgcaattaaaacgttcaatgcaaaaaaaaaatgca
agaaaaaacattaaaatcaattttgtaaacattggcgtgGCAtcggagag
tgtgattaacgattaattgctctctacagaatgcaattaacgattaattg
ctctctttgagggcgtggcaaataagaaaaaataacccatcgtgcgatta
taaattataattgcaataaaACATAAGCGAGAAACTTGACCAAgcatgtt
ttatttttcataataaAAGACCTTTTATTTCAATCATTACTTTTAGGACC
GCAAATTTGACTTTACGATCAGTCAGCCACCTGCAACCTACTTCTTGAAA
CAAGCTGCTGGTGTCGAAAAAGGCTCTTCCAACCCTGGTAAGTGTTTCCC
ATGGTTTTCTTGCCCGTTGATTGATCTCGTGATCCAACCACCATATGAAT
ATCACTGTCGATGAACTGAAACCTATTTGGAAGAATAAGaccctttttct
ttcttttatgtTCAGGTCGTGAGATGATTGGTTCCGTAACATTGAAACAG
ATTTACGAGATCGCCCTTGTCAAAGGAAAAGATGAAGGTTTTAAGAATAC
AGACCTTCAAGGAGTTTGCAAATGTCTGATAGACTCTGCTCATAGTATGG
GCATCGAAATAATCAACGACAGAAGTGAAGACATGACGACGGAAGAATCT
ACTAGTGCTGTTGCAAGCTGATTTTCATTGtgtaattttgaatttcattt
gGATTGTCGTGTGAATGTTTTTAGGTTCACTGACACTACAAAATGTTTTC
GTGGCATCGATTTATTTCTTGAGTGGCAACATGATACAGTACCAGACACT
AAGAATACTCCAATTAATCGTCGTCCAGTTCAAACGCGATTTGTTGAATT
AAAGGACTGGAATCGCTTGGCAAAAACTGAACCTCTAGAAAACTAGAGTA
AAAGATTTTATAAACGTATTGTATTATATAGTGGAGTCGAACTGTCTCAA
ACTTTTAGATTTGAATCTTTTG

Coding sequence (CDS) from alignment at sc0000106:41786..44607+

>TCONS_00010390 ID=TCONS_00010390|Name=TCONS_00010390|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at sc0000106:41786..44607+ (Clytia hemisphaerica)
ATGGCGCAAAAGAAATTATCTGGAGTGTTGAAGATGTATGTCGCAGCAGG
AAAAGCCGCCCCTTCGCCACCACTTGGTCCCGCCCTTGGGCAGCGTGGTA
TCAATATCATGCAATTTTGTAAGGATTtcaacgaacgaacgaaagatTAC
AAACAAGGAGTTCCCATACCAACCCGTGTCGTTTACAAGGACCGCAAATT
TGACTTTACGATCAGTCAGCCACCTGCAACCTACTTCTTGAAACAAGCTG
CTGGTGTCGAAAAAGGCTCTTCCAACCCTGGTCGTGAGATGATTGGTTCC
GTAACATTGAAACAGATTTACGAGATCGCCCTTGTCAAAGGAAAAGATGA
AGGTTTTAAGAATACAGACCTTCAAGGAGTTTGCAAATGTCTGATAGACT
CTGCTCATAGTATGGGCATCGAAATAATCAACGACAGAAGTGAAGACATG
ACGACGGAAGAATCTACTAGTGCTGTTGCAAGCTGAATGGCGCAAAAGAA
ATTATCTGGAGTGTTGAAGATGTATGTCGCAGCAGGAAAAGCCGCCCCTT
CGCCACCACTTGGTCCCGCCCTTGGGCAGCGTGGTATCAATATCATGCAA
TTTTGTAAGGATTtcaacgaacgaacgaaagatTACAAACAAGGAGTTCC
CATACCAACCCGTGTCGTTTACAAGGACCGCAAATTTGACTTTACGATCA
GTCAGCCACCTGCAACCTACTTCTTGAAACAAGCTGCTGGTGTCGAAAAA
GGCTCTTCCAACCCTGGTCGTGAGATGATTGGTTCCGTAACATTGAAACA
GATTTACGAGATCGCCCTTGTCAAAGGAAAAGATGAAGGTTTTAAGAATA
CAGACCTTCAAGGAGTTTGCAAATGTCTGATAGACTCTGCTCATAGTATG
GGCATCGAAATAATCAACGACAGAAGTGAAGACATGACGACGGAAGAATC
TACTAGTGCTGTTGCAAGCTGAATGGCGCAAAAGAAATTATCTGGAGTGT
TGAAGATGTATGTCGCAGCAGGAAAAGCCGCCCCTTCGCCACCACTTGGT
CCCGCCCTTGGGCAGCGTGGTATCAATATCATGCAATTTTGTAAGGATTt
caacgaacgaacgaaagatTACAAACAAGGAGTTCCCATACCAACCCGTG
TCGTTTACAAGGACCGCAAATTTGACTTTACGATCAGTCAGCCACCTGCA
ACCTACTTCTTGAAACAAGCTGCTGGTGTCGAAAAAGGCTCTTCCAACCC
TGGTCGTGAGATGATTGGTTCCGTAACATTGAAACAGATTTACGAGATCG
CCCTTGTCAAAGGAAAAGATGAAGGTTTTAAGAATACAGACCTTCAAGGA
GTTTGCAAATGTCTGATAGACTCTGCTCATAGTATGGGCATCGAAATAAT
CAACGACAGAAGTGAAGACATGACGACGGAAGAATCTACTAGTGCTGTTG
CAAGCTGAATGGCGCAAAAGAAATTATCTGGAGTGTTGAAGATGTATGTC
GCAGCAGGAAAAGCCGCCCCTTCGCCACCACTTGGTCCCGCCCTTGGGCA
GCGTGGTATCAATATCATGCAATTTTGTAAGGATTtcaacgaacgaacga
aagatTACAAACAAGGAGTTCCCATACCAACCCGTGTCGTTTACAAGGAC
CGCAAATTTGACTTTACGATCAGTCAGCCACCTGCAACCTACTTCTTGAA
ACAAGCTGCTGGTGTCGAAAAAGGCTCTTCCAACCCTGGTCGTGAGATGA
TTGGTTCCGTAACATTGAAACAGATTTACGAGATCGCCCTTGTCAAAGGA
AAAGATGAAGGTTTTAAGAATACAGACCTTCAAGGAGTTTGCAAATGTCT
GATAGACTCTGCTCATAGTATGGGCATCGAAATAATCAACGACAGAAGTG
AAGACATGACGACGGAAGAATCTACTAGTGCTGTTGCAAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005840XLOC_005840Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010390-exon-sc0000106-1491911889:41786..42217TCONS_00010390-exon-sc0000106-1491911889:41786..42217Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1510915933:41786..42217TCONS_00010390-exon-sc0000106-1510915933:41786..42217Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1575043694:41786..42217TCONS_00010390-exon-sc0000106-1575043694:41786..42217Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1491911889:42636..42753TCONS_00010390-exon-sc0000106-1491911889:42636..42753Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1510915933:42636..42753TCONS_00010390-exon-sc0000106-1510915933:42636..42753Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1575043694:42636..42753TCONS_00010390-exon-sc0000106-1575043694:42636..42753Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1491911889:43018..43113TCONS_00010390-exon-sc0000106-1491911889:43018..43113Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1510915933:43018..43113TCONS_00010390-exon-sc0000106-1510915933:43018..43113Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1575043694:43018..43113TCONS_00010390-exon-sc0000106-1575043694:43018..43113Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1491911889:43882..43972TCONS_00010390-exon-sc0000106-1491911889:43882..43972Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1510915933:43882..43972TCONS_00010390-exon-sc0000106-1510915933:43882..43972Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1575043694:43882..43972TCONS_00010390-exon-sc0000106-1575043694:43882..43972Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1491911889:44101..44607TCONS_00010390-exon-sc0000106-1491911889:44101..44607Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1510915933:44101..44607TCONS_00010390-exon-sc0000106-1510915933:44101..44607Clytia hemisphaericaexon
TCONS_00010390-exon-sc0000106-1575043694:44101..44607TCONS_00010390-exon-sc0000106-1575043694:44101..44607Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010390-proteinTCONS_00010390-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106supercontigsc0000106:41786..44607 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.1928	9.58501	5.46281	3.37209	7.86621	5.40291	5.70027	6.27533	7.7173	9.8192	2.77042	4.19444	5.04018	4.3823	4.0064	4.97217	15.0966	12.9062	2.38905	7.0255	8.28342	7.18832	16.1487	15.5697	4.10509	5.62414	5.85348	5.93236	9.83132	11.104
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000911Ribosomal_L11/L12
IPR020783Ribosomal_L11_C
IPR020784Ribosomal_L11_N
IPR006519Ribosomal_L11_bac-typ
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00010390 vs. Swiss-Prot (Human)
Match: RM11 (39S ribosomal protein L11, mitochondrial OS=Homo sapiens GN=MRPL11 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.147e-37
Identity = 63/122 (51.64%), Postives = 87/122 (71.31%), Query Frame = 2 
Query:  548 QRGINIMQFCKDFNERTKDYKQGVPIPTRVVYK-DRKFDFTISQPPATYFLKQAAGVEKGSSNPGREMIGSVTLKQIYEIALVKGKDEGFKNTD--LQGVCKCLIDSAHSMGIEIINDRSED 904
            QRG++I QFCK+FNERTKD K+G+P+PT+++ K DR F+  I QP  +YFLK AAG+EKG+   G+E+ G VTLK +YEIA +K +DE F   D  L  V + +I SA S+GI ++ D S +
Sbjct:   41 QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLSSE 162
The following BLAST results are available for this feature:
BLAST of TCONS_00010390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM113.147e-3751.6439S ribosomal protein L11, mitochondrial OS=Homo s... [more]
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