TCONS_00010347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010347
Unique NameTCONS_00010347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010347 ID=TCONS_00010347|Name=TCONS_00010347|organism=Clytia hemisphaerica|type=transcript|length=663bp
ATATGTTGTAATAAATCCGCCAACACGTCTAATTATTACAGTTTATTCGC
TAACTTGTTATTAAGTCCTATCTTTTTTGTATTTCATTTAATCATTGAAT
ATATAACAGAGTGCACTGTTTGACATTTGTTTTGTGTATGCCCACTCAAG
CTGACATTTAAAGGTACATGTACATAAAAGAAATATCAGCCTTTTTGCTA
AGGAAAACTCGTTTTAATCGTAAAAGCTAATCATAATTCGAGGTATTGCA
TAATGTATGTTTTTTAGAGTAAGATGATTGATGAAGTTACCTAGGAACAT
ATTGGTTGCTCAAGGTTATTATAgtgaagtctccataactcgaacacgta
aGGGGAACAAAACTTTCGttcgaaaaaaggaaaattcgagttatggagta
aggcttGTATGACATTGTTAACTGGAGGGACTAgagaatttgttcgagtt
agggAGACATTCGACGttagaagttcgagttaaagaggctCTAATGTATT
CTTGTACTTTTACTTTTCAGCCGGATGGGTCTAAAGCAATAAGTACAGAT
CTCATTTTTTGCCAAGCTTCTCGGTCTTTGTACATAATGGAGTTTGTTAC
CAAAAAGGATCAGacaacttgttcgagttaaggagacatttgattTGTAG
AGGATCGAATCGG
Run BLAST on NCBI

transcript from alignment at sc0000104:132257..132919

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010347 ID=TCONS_00010347|Name=TCONS_00010347|organism=Clytia hemisphaerica|type=transcript|length=663bp|location=Sequence derived from alignment at sc0000104:132257..132919 (Clytia hemisphaerica)
CCGATTCGATCCTCTACAaatcaaatgtctccttaactcgaacaagttgt
CTGATCCTTTTTGGTAACAAACTCCATTATGTACAAAGACCGAGAAGCTT
GGCAAAAAATGAGATCTGTACTTATTGCTTTAGACCCATCCGGCTGAAAA
GTAAAAGTACAAGAATACATTAGagcctctttaactcgaacttctaaCGT
CGAATGTCTccctaactcgaacaaattctcTAGTCCCTCCAGTTAACAAT
GTCATACaagccttactccataactcgaattttccttttttcgaaCGAAA
GTTTTGTTCCCCttacgtgttcgagttatggagacttcacTATAATAACC
TTGAGCAACCAATATGTTCCTAGGTAACTTCATCAATCATCTTACTCTAA
AAAACATACATTATGCAATACCTCGAATTATGATTAGCTTTTACGATTAA
AACGAGTTTTCCTTAGCAAAAAGGCTGATATTTCTTTTATGTACATGTAC
CTTTAAATGTCAGCTTGAGTGGGCATACACAAAACAAATGTCAAACAGTG
CACTCTGTTATATATTCAATGATTAAATGAAATACAAAAAAGATAGGACT
TAATAACAAGTTAGCGAATAAACTGTAATAATTAGACGTGTTGGCGGATT
TATTACAACATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005806XLOC_005806Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010347-exon-sc0000104-1491911889:132257..132919TCONS_00010347-exon-sc0000104-1491911889:132257..132919Clytia hemisphaericaexon
TCONS_00010347-exon-sc0000104-1510915933:132257..132919TCONS_00010347-exon-sc0000104-1510915933:132257..132919Clytia hemisphaericaexon
TCONS_00010347-exon-sc0000104-1575043694:132257..132919TCONS_00010347-exon-sc0000104-1575043694:132257..132919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:132257..132919 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.526913	0.582923	0.200935	0.752452	0.131702	0.0815672	0	0.676572	0.207887	0.107946	0.0443732	0.285715	0.117326	0.240511	0.581488	0.347706	0.831103	0.663354	0	0.162918	0.0839006	0.524155	0.214304	0.228711	0	0.265107
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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