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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010342 ID=TCONS_00010342|Name=TCONS_00010342|organism=Clytia hemisphaerica|type=transcript|length=1049bp
GTGGAAtatctgtaaaaaaaattagatatacaaaatataaaaaagattat
ttaaaatcaaattccTAAAGCAAAATTAACACTAAAATTCtactaaaaaa
aattgtttgttgttttatattttcagaaaaatggAACTATGAAAGTATAA
TTCTAAtgaataagatttttttaaatcacagGTATATGCATGTATATGAC
GTACTCATCGTCTGAAGGCCTGAATTTATATGTGAAATATGGTAGGTGAT
GTAATGTAATTACAagtaatgttttattttgatgtattattaaaaaaagt
aatgaatgcAACACAGATAGAACGGTAGTTATCCATGAGTGTAGGTTTAA
TGGAATAGGACAATCAATTGCCAGCATCTCCATCTATTTCAAGTAAATAT
TGTGCGTGATATCCTTTGTATAATGTTTTTATGTCCTGAGGTAAATCCTT
CCAGCCAGTTATTACCCCTCTGCATTGAAGAGCGCTACACTTGCATGGTG
GCATATGATCGACTTTGTAGTTTCCCATTGCATAATCTCCAACTATTTCA
TCACCAGGATGAATatctttgaaagcaaaatagTCCATTCCACCAACTGA
ATTGTCTCTGTAACCCACATTAGGATCACATGAATGATTGACTTTTTGTG
CAAGTTCTTCTCTTAATATCCATCTGTTAACCCCTACTTGAGTTGTATGG
CTTGTATTATGAGGCATTTCTTTCAGCACTTTTCCCTCCATAACAAGAGG
TcctttacaaaaatattttgtggcAAAGATACCTTCACCCTTTTCAGGAG
TTTTTCTCAGTTCATAACCAAGTGATGTTTTGTCCATTTTGTCTTGTCTA
CTTGAAATACTTTTGGTGATATCCCAAATGATAAACCAAGTGTCCCAGAA
ATAAGTTATGATGTCCTCTTTTAATGTTAAATTACTCAAGATTACTATca
gtttcaaaaaaagtttcatagCCACTAATAAAAAAACCTCCACAACCTAC
ACCCCACCCCCTTAATGACCACTCAATGTTTTCTGTGCCAAGTTTGAGT Run BLAST on NCBI protein sequence of TCONS_00010342-protein >TCONS_00010342-protein ID=TCONS_00010342-protein|Name=TCONS_00010342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MKLFLKLIVILSNLTLKEDIITYFWDTWFIIWDITKSISSRQDKMDKTSL
GYELRKTPEKGEGIFATKYFCKGPLVMEGKVLKEMPHNTSHTTQVGVNRW
ILREELAQKVNHSCDPNVGYRDNSVGGMDYFAFKDIHPGDEIVGDYAMGN
YKVDHMPPCKCSALQCRGVITGWKDLPQDIKTLYKGYHAQYLLEIDGDAG
N Run BLAST on NCBI transcript from alignment at sc0000104:38317..39365 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010342 ID=TCONS_00010342|Name=TCONS_00010342|organism=Clytia hemisphaerica|type=transcript|length=1049bp|location=Sequence derived from alignment at sc0000104:38317..39365 (Clytia hemisphaerica)
ACTCAAACTTGGCACAGAAAACATTGAGTGGTCATTAAGGGGGTGGGGTG
TAGGTTGTGGAGGTTTTTTTATTAGTGGctatgaaactttttttgaaact
gATAGTAATCTTGAGTAATTTAACATTAAAAGAGGACATCATAACTTATT
TCTGGGACACTTGGTTTATCATTTGGGATATCACCAAAAGTATTTCAAGT
AGACAAGACAAAATGGACAAAACATCACTTGGTTATGAACTGAGAAAAAC
TCCTGAAAAGGGTGAAGGTATCTTTgccacaaaatatttttgtaaaggAC
CTCTTGTTATGGAGGGAAAAGTGCTGAAAGAAATGCCTCATAATACAAGC
CATACAACTCAAGTAGGGGTTAACAGATGGATATTAAGAGAAGAACTTGC
ACAAAAAGTCAATCATTCATGTGATCCTAATGTGGGTTACAGAGACAATT
CAGTTGGTGGAATGGActattttgctttcaaagatATTCATCCTGGTGAT
GAAATAGTTGGAGATTATGCAATGGGAAACTACAAAGTCGATCATATGCC
ACCATGCAAGTGTAGCGCTCTTCAATGCAGAGGGGTAATAACTGGCTGGA
AGGATTTACCTCAGGACATAAAAACATTATACAAAGGATATCACGCACAA
TATTTACTTGAAATAGATGGAGATGCTGGCAATTGATTGTCCTATTCCAT
TAAACCTACACTCATGGATAACTACCGTTCTATCTGTGTTgcattcatta
ctttttttaataatacatcaaaataaaacattactTGTAATTACATTACA
TCACCTACCATATTTCACATATAAATTCAGGCCTTCAGACGATGAGTACG
TCATATACATGCATATACctgtgatttaaaaaaatcttattcaTTAGAAT
TATACTTTCATAGTTccatttttctgaaaatataaaacaacaaacaattt
tttttagtaGAATTTTAGTGTTAATTTTGCTTTAggaatttgattttaaa
taatcttttttatattttgtatatctaattttttttacagataTTCCAC Coding sequence (CDS) from alignment at sc0000104:38317..39365 >TCONS_00010342 ID=TCONS_00010342|Name=TCONS_00010342|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0000104:38317..39365 (Clytia hemisphaerica)
atgaaactttttttgaaactgATAGTAATCTTGAGTAATTTAACATTAAA
AGAGGACATCATAACTTATTTCTGGGACACTTGGTTTATCATTTGGGATA
TCACCAAAAGTATTTCAAGTAGACAAGACAAAATGGACAAAACATCACTT
GGTTATGAACTGAGAAAAACTCCTGAAAAGGGTGAAGGTATCTTTgccac
aaaatatttttgtaaaggACCTCTTGTTATGGAGGGAAAAGTGCTGAAAG
AAATGCCTCATAATACAAGCCATACAACTCAAGTAGGGGTTAACAGATGG
ATATTAAGAGAAGAACTTGCACAAAAAGTCAATCATTCATGTGATCCTAA
TGTGGGTTACAGAGACAATTCAGTTGGTGGAATGGActattttgctttca
aagatATTCATCCTGGTGATGAAATAGTTGGAGATTATGCAATGGGAAAC
TACAAAGTCGATCATATGCCACCATGCAAGTGTAGCGCTCTTCAATGCAG
AGGGGTAATAACTGGCTGGAAGGATTTACCTCAGGACATAAAAACATTAT
ACAAAGGATATCACGCACAATATTTACTTGAAATAGATGGAGATGCTGGC
AATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010342-exon-sc0000104-1491911889:38317..39365 | TCONS_00010342-exon-sc0000104-1491911889:38317..39365 | Clytia hemisphaerica | exon |
| TCONS_00010342-exon-sc0000104-1510915933:38317..39365 | TCONS_00010342-exon-sc0000104-1510915933:38317..39365 | Clytia hemisphaerica | exon |
| TCONS_00010342-exon-sc0000104-1575043694:38317..39365 | TCONS_00010342-exon-sc0000104-1575043694:38317..39365 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:38317..39365 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001214 | SET_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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