TCONS_00010339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010339
Unique NameTCONS_00010339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010339 ID=TCONS_00010339|Name=TCONS_00010339|organism=Clytia hemisphaerica|type=transcript|length=533bp
TTGGCAACCATCCAAGAAAGTGGGACAGGACAGGAGTTATCATTGAGGTC
TGACAGCATCACCAATACGTCGTGAGAGTTGACGGATCTGGCAGAGTGAC
AATCCGCAACAGAAAGTTCCTTCGCAAATTTGTTCCCGTTCGTCCTCAAG
CAGTCAGAGCTCCATCTGTTCATGCCTGTCCACCACTCGGACAATCGAGG
AATGTTACACCTCACGTCGTCGTAAATCCATCGGCAGATCCAGTTCATCA
GGAGCAGACACCAACGGTCCCCGTCAACGAATCTCCTCGAGACgatccat
cttcacctccacTCGTCACAGATACACCATCAGGACCAACCGCCCCAGTT
CCTCCACCAATCGTTACTCCCCCTGTCCCATCACCCTTCAGCAACACGAG
CCGTTCAACTGTGATTCGTCGATCTACACGTCAACGCAAGGCCCCAGCGT
ACCTTGCTGATTATGAACACTGAAAGAGACATTCTGATTACTATCACCAT
AACTCCCCTTGCGAGATCCTTATGACTGGGGGG
Run BLAST on NCBI

transcript from alignment at sc0000104:12754..13286

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010339 ID=TCONS_00010339|Name=TCONS_00010339|organism=Clytia hemisphaerica|type=transcript|length=533bp|location=Sequence derived from alignment at sc0000104:12754..13286 (Clytia hemisphaerica)
CCCCCCAGTCATAAGGATCTCGCAAGGGGAGTTATGGTGATAGTAATCAG
AATGTCTCTTTCAGTGTTCATAATCAGCAAGGTACGCTGGGGCCTTGCGT
TGACGTGTAGATCGACGAATCACAGTTGAACGGCTCGTGTTGCTGAAGGG
TGATGGGACAGGGGGAGTAACGATTGGTGGAGGAACTGGGGCGGTTGGTC
CTGATGGTGTATCTGTGACGAgtggaggtgaagatggatcGTCTCGAGGA
GATTCGTTGACGGGGACCGTTGGTGTCTGCTCCTGATGAACTGGATCTGC
CGATGGATTTACGACGACGTGAGGTGTAACATTCCTCGATTGTCCGAGTG
GTGGACAGGCATGAACAGATGGAGCTCTGACTGCTTGAGGACGAACGGGA
ACAAATTTGCGAAGGAACTTTCTGTTGCGGATTGTCACTCTGCCAGATCC
GTCAACTCTCACGACGTATTGGTGATGCTGTCAGACCTCAATGATAACTC
CTGTCCTGTCCCACTTTCTTGGATGGTTGCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005799XLOC_005799Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010339-exon-sc0000104-1491911889:12754..13286TCONS_00010339-exon-sc0000104-1491911889:12754..13286Clytia hemisphaericaexon
TCONS_00010339-exon-sc0000104-1510915933:12754..13286TCONS_00010339-exon-sc0000104-1510915933:12754..13286Clytia hemisphaericaexon
TCONS_00010339-exon-sc0000104-1575043694:12754..13286TCONS_00010339-exon-sc0000104-1575043694:12754..13286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:12754..13286 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.64249	1.06781	1.49029	1.37144	0.885995	0.46675	0.768972	0.570436	0.282308	0.571474	0	0.717338	0.523274	1.11426	0.212392	1.15709	1.39889	0.421265	0.49483	1.70946	1.09927	2.32943	0.340719	0.799	0.705387	0.223153	2.15588	3.56401	2.2798	2.16843
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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