TCONS_00010337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010337
Unique NameTCONS_00010337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010337 ID=TCONS_00010337|Name=TCONS_00010337|organism=Clytia hemisphaerica|type=transcript|length=888bp
GATTATTTGTCGAGCAAATTTTTACATAGAGGGTCACAGGATAGGATAGT
TGTATGCGATGCTCAAGGGCTGTATCATTAGGAAAATTGCCTTGTCATTT
ATATTGGTGACTCGTATTGTGGTGATAGAGTCTTTTAAATGCTATAAGAA
GTCCATACCAAAGAATAACCATGGGGTTGAACCAATTGCTGCTTTTCGAG
AAGaaagaagTCCATCGTTTGGCAATCTGCTCACCAACATATATCGATAT
TCTCCTGAATGGCACATCGAATTTGATCTCAAATTGACTGCTCCGGTCAC
ATCATATTGGAATACTATATTTTGTGTAACACATTCTGCTTATGGCAGTA
GAAATCCATGTATTTACATCTGGAatAATGTGATGCAAATTTCAGCTACG
GTGAACGGCGATGGAAATTATATATACTCCAAGAATGACATGCAAATAGA
CCAACTATATCACATTGAGATCTCCCAACGTTATGTTAACAATGGCCAAT
ACCGATATGCTATTTCAATTGATGGGGTTGAAGTAGACTCTGTGATGAAT
ACACAAGCTAAACAATCATATAACCTCATTGTTGGTTTGTCTGACAATCA
TCACGACCCAGCTCCATGTTTAGTGTCGAATTTTGAGATGATCAACTTTT
TGTAATGCCACGTACAGTCTAGCCTCTATCCTGACACACGATTGATCAAA
AATTGTGGTCGTCTGTTACAGGCAACACGTCGactttctctctaattcga
aattatattattcgaatatttctgtaattcaaacAATATTGGTCCACTCG
ACTGAAAAGTTGTAATTCGAATGTCTTTCTAATTTGTCCCTTTGAGATcg
aattacacgctttttttataagaatggtgtaaatccag
Run BLAST on NCBI

protein sequence of TCONS_00010337-protein

>TCONS_00010337-protein ID=TCONS_00010337-protein|Name=TCONS_00010337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MLKGCIIRKIALSFILVTRIVVIESFKCYKKSIPKNNHGVEPIAAFREER
SPSFGNLLTNIYRYSPEWHIEFDLKLTAPVTSYWNTIFCVTHSAYGSRNP
CIYIWNNVMQISATVNGDGNYIYSKNDMQIDQLYHIEISQRYVNNGQYRY
AISIDGVEVDSVMNTQAKQSYNLIVGLSDNHHDPAPCLVSNFEMINFL
Run BLAST on NCBI

transcript from alignment at sc0000104:617268..619445-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010337 ID=TCONS_00010337|Name=TCONS_00010337|organism=Clytia hemisphaerica|type=transcript|length=2178bp|location=Sequence derived from alignment at sc0000104:617268..619445- (Clytia hemisphaerica)
GATTATTTGTCGAGCAAATTTTTACATAGAGGGTCACAGGATAGGATAGT
TGTATGCGATGCTCAAGGGCTGTATCATTAGGAAAATTGCCTTGTCATTT
ATATTGGTGACTCGTATTGTGGTGATAGAGTCTTTTAAATGCTATAAGAA
GGTAGACATTTGTTTATTTAGGCTTTCTATGATATATTCATTTTATATTG
AACATAATCTTTTTCCTAAAATTTAGCCCGGTGGGAGGGTGCGCAAAATA
AAAAATGCTGATTATGTACGGACCTTAAATGATGGGATTTCGGCTTTTCC
AAGTCTCTTCTCTTAGGCTTAGAAAAAATCTAAAGGTCAAATTTTGAATA
TTTTCATTCTCTAATGGAGGTAGCAAGCTAAATATCATTTTTATTTTTCC
TTTCATTTTAGTCCATACCAAAGAATAACCATGGGGTTGAACCAATTGCT
GCTTTTCGAGAAGGTACAAAAGTTTTTGTTGAATGGAATTTCCAGTATTT
TGTTCATTCCACAGTGTGAAAAAGTTGAATTTTGCCAGTACTCATTGGCA
TTGTCCTTTTCATAAATTACGTCACGAATATCACTTACCTCGTATTCAAA
CAATTGCCATGGTGATTACGTCCCTTGAGACAATTTTTTACAAATAGAAA
GAAGTGCTAATAAAATCCGCTGGGAGTTAATCACCTTGGCAATAATTTCA
AAACAAATGATGTTCGTGACAAAATTTATGAAAAGGTCTATTTGTCAGTA
TTCTTATAGAATTTTTAAGAGATGATTGACAAATTAGAGAATTTTTTTAT
AGAAAGAAGTCCATCGTTTGGCAATCTGCTCACCAACATATATCGATATT
CTCCTGAATGGCACATCGAATTTGATCTCAAATTGACTGCTCCGGTCACA
TCATATTGGAATACTATATTTTGTGTAACACATTCTGCTTATGGCAGTAG
AAATCCATGTATTTACATCTGGAGTAAGTTATCCCATTGAGTTTCAAGCC
AAAAGCTGGAGGCGAGTTTTCATTTTTTCCTAGGCAAGTAGTAAAGCCTT
TATACTAGCCGGTGGCAGATTGAATTTACAGGCCCGGCGGAAGCGGGGAG
ACTGGGGAGACTTAACCCTCCCCACTTTTGAGTAAATGAGATTTTTTTCT
CAAATTCCTAGCAAATTTTATCTAATTTTGCGCTTTCAGCCTCTCCAATT
TTACGATTGTTCCGCCGAGCCTGATTTAGCACTTCCTTTGCTTTCGCGTC
TTTCATTTATCATTTTTAACGGTTTTAAATGTTCCTTCCAATACAACGTT
TGTAAGAAAACCATGCGTGTCGCTCGACTTATGTAGAAAATTAGTGCCTT
TAAATCTTGCATACCTTAAGAGAAAAAATATTGGTGGGCATGACATATTT
AGTAAAACACTAAATTTCGGAAGATGTATTAGTCAGACTGTATCTCTGTC
ACTTTTACTAAAATATCAGAGTTCATGGATAGATTCAGGCATGTCAGGCT
CCACATTATATCGGCCAGGTTCATTTCCTGTTTTTAAAAAGTCAATATCT
TATGTGTTTGACAAACTTGCCAAGAATTCCAGCGTTACCTTCCCTTTTGC
CGTCCCGTGCCCCTAGATTTAAATCTGCCTAAAAATACTTTGAACGCTAT
TTTGTATTTTTCAGATAATGTGATGCAAATTTCAGCTACGGTGAACGGCG
ATGGAAATTATATATACTCCAAGAATGACATGCAAATAGACCAACTATAT
CACATTGAGATCTCCCAACGTTATGTTAACAATGGCCAATACCGATATGC
TATTTCAATTGATGGGGTTGAAGTAGACTCTGTGATGAATACACAAGCTA
AACAATCATATAACCTCATTGTTGGTTTGTCTGACAATCATCACGACCCA
GCTCCATGTTTAGTGTCGAATTTTGAGATGATCAACTTTTTGTAATGCCA
CGTACAGTCTAGCCTCTATCCTGACACACGATTGATCAAAAATTGTGGTC
GTCTGTTACAGGCAACACGTCGACTTTCTCTCTAATTCGAAATTATATTA
TTCGAATATTTCTGTAATTCAAACAATATTGGTCCACTCGACTGAAAAGT
TGTAATTCGAATGTCTTTCTAATTTGTCCCTTTGAGATCGAATTACACGC
TTTTTTTATAAGAATGGTGTAAATCCAG

Coding sequence (CDS) from alignment at sc0000104:617268..619445-

>TCONS_00010337 ID=TCONS_00010337|Name=TCONS_00010337|organism=Clytia hemisphaerica|type=CDS|length=2388bp|location=Sequence derived from alignment at sc0000104:617268..619445- (Clytia hemisphaerica)
ATAATGTGATGCAAATTTCAGCTACGGTGAACGGCGATGGAAATTATATA
TACTCCAAGAATGACATGCAAATAGACCAACTATATCACATTGAGATCTC
CCAACGTTATGTTAACAATGGCCAATACCGATATGCTATTTCAATTGATG
GGGTTGAAGTAGACTCTGTGATGAATACACAAGCTAAACAATCATATAAC
CTCATTGTTGGTTTGTCTGACAATCATCACGACCCAGCTCCATGTTTAGT
GTCGAATTTTGAGATGATCAACTTTTTGTAAAAAGAAGTCCATCGTTTGG
CAATCTGCTCACCAACATATATCGATATTCTCCTGAATGGCACATCGAAT
TTGATCTCAAATTGACTGCTCCGGTCACATCATATTGGAATACTATATTT
TGTGTAACACATTCTGCTTATGGCAGTAGAAATCCATGTATTTACATCTG
GATCCATACCAAAGAATAACCATGGGGTTGAACCAATTGCTGCTTTTCGA
GAAGATGCTCAAGGGCTGTATCATTAGGAAAATTGCCTTGTCATTTATAT
TGGTGACTCGTATTGTGGTGATAGAGTCTTTTAAATGCTATAAGAAGATA
ATGTGATGCAAATTTCAGCTACGGTGAACGGCGATGGAAATTATATATAC
TCCAAGAATGACATGCAAATAGACCAACTATATCACATTGAGATCTCCCA
ACGTTATGTTAACAATGGCCAATACCGATATGCTATTTCAATTGATGGGG
TTGAAGTAGACTCTGTGATGAATACACAAGCTAAACAATCATATAACCTC
ATTGTTGGTTTGTCTGACAATCATCACGACCCAGCTCCATGTTTAGTGTC
GAATTTTGAGATGATCAACTTTTTGTAAAAAGAAGTCCATCGTTTGGCAA
TCTGCTCACCAACATATATCGATATTCTCCTGAATGGCACATCGAATTTG
ATCTCAAATTGACTGCTCCGGTCACATCATATTGGAATACTATATTTTGT
GTAACACATTCTGCTTATGGCAGTAGAAATCCATGTATTTACATCTGGAT
CCATACCAAAGAATAACCATGGGGTTGAACCAATTGCTGCTTTTCGAGAA
GATGCTCAAGGGCTGTATCATTAGGAAAATTGCCTTGTCATTTATATTGG
TGACTCGTATTGTGGTGATAGAGTCTTTTAAATGCTATAAGAAGATAATG
TGATGCAAATTTCAGCTACGGTGAACGGCGATGGAAATTATATATACTCC
AAGAATGACATGCAAATAGACCAACTATATCACATTGAGATCTCCCAACG
TTATGTTAACAATGGCCAATACCGATATGCTATTTCAATTGATGGGGTTG
AAGTAGACTCTGTGATGAATACACAAGCTAAACAATCATATAACCTCATT
GTTGGTTTGTCTGACAATCATCACGACCCAGCTCCATGTTTAGTGTCGAA
TTTTGAGATGATCAACTTTTTGTAAAAAGAAGTCCATCGTTTGGCAATCT
GCTCACCAACATATATCGATATTCTCCTGAATGGCACATCGAATTTGATC
TCAAATTGACTGCTCCGGTCACATCATATTGGAATACTATATTTTGTGTA
ACACATTCTGCTTATGGCAGTAGAAATCCATGTATTTACATCTGGATCCA
TACCAAAGAATAACCATGGGGTTGAACCAATTGCTGCTTTTCGAGAAGAT
GCTCAAGGGCTGTATCATTAGGAAAATTGCCTTGTCATTTATATTGGTGA
CTCGTATTGTGGTGATAGAGTCTTTTAAATGCTATAAGAAGATAATGTGA
TGCAAATTTCAGCTACGGTGAACGGCGATGGAAATTATATATACTCCAAG
AATGACATGCAAATAGACCAACTATATCACATTGAGATCTCCCAACGTTA
TGTTAACAATGGCCAATACCGATATGCTATTTCAATTGATGGGGTTGAAG
TAGACTCTGTGATGAATACACAAGCTAAACAATCATATAACCTCATTGTT
GGTTTGTCTGACAATCATCACGACCCAGCTCCATGTTTAGTGTCGAATTT
TGAGATGATCAACTTTTTGTAAAAAGAAGTCCATCGTTTGGCAATCTGCT
CACCAACATATATCGATATTCTCCTGAATGGCACATCGAATTTGATCTCA
AATTGACTGCTCCGGTCACATCATATTGGAATACTATATTTTGTGTAACA
CATTCTGCTTATGGCAGTAGAAATCCATGTATTTACATCTGGATCCATAC
CAAAGAATAACCATGGGGTTGAACCAATTGCTGCTTTTCGAGAAGATGCT
CAAGGGCTGTATCATTAGGAAAATTGCCTTGTCATTTATATTGGTGACTC
GTATTGTGGTGATAGAGTCTTTTAAATGCTATAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005797XLOC_005797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010337-exon-sc0000104-1575043694:619295..619445TCONS_00010337-exon-sc0000104-1575043694:619295..619445Clytia hemisphaericaexon
TCONS_00010337-exon-sc0000104-1575043694:618983..619034TCONS_00010337-exon-sc0000104-1575043694:618983..619034Clytia hemisphaericaexon
TCONS_00010337-exon-sc0000104-1575043694:618473..618643TCONS_00010337-exon-sc0000104-1575043694:618473..618643Clytia hemisphaericaexon
TCONS_00010337-exon-sc0000104-1575043694:617268..617781TCONS_00010337-exon-sc0000104-1575043694:617268..617781Clytia hemisphaericaexon
TCONS_00010337-exon-sc0000104-1510915933:619295..619445TCONS_00010337-exon-sc0000104-1510915933:619295..619445Clytia hemisphaericaexon
TCONS_00010337-exon-sc0000104-1510915933:618983..619034TCONS_00010337-exon-sc0000104-1510915933:618983..619034Clytia hemisphaericaexon
TCONS_00010337-exon-sc0000104-1510915933:618473..618643TCONS_00010337-exon-sc0000104-1510915933:618473..618643Clytia hemisphaericaexon
TCONS_00010337-exon-sc0000104-1510915933:617268..617781TCONS_00010337-exon-sc0000104-1510915933:617268..617781Clytia hemisphaericaexon
TCONS_00010337-exon-sc0000104-1491911889:619295..619445TCONS_00010337-exon-sc0000104-1491911889:619295..619445Clytia hemisphaericaexon
TCONS_00010337-exon-sc0000104-1491911889:618983..619034TCONS_00010337-exon-sc0000104-1491911889:618983..619034Clytia hemisphaericaexon
TCONS_00010337-exon-sc0000104-1491911889:618473..618643TCONS_00010337-exon-sc0000104-1491911889:618473..618643Clytia hemisphaericaexon
TCONS_00010337-exon-sc0000104-1491911889:617268..617781TCONS_00010337-exon-sc0000104-1491911889:617268..617781Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010337-proteinTCONS_00010337-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:617268..619445 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.9818	6.29176	3.19465	1.98325	0.281848	0.11136	0.808287	1.06911	1.01269	0.65446	0.215094	0.488842	4.48273	4.54709	0.0296693	0.095519	0.274567	0.0804064	9.77555	7.43957	0.252591	0	3.17517	2.72329	0.0560985	0.250333	0.14329	0.305846	1.39184	1.77258
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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