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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010333 ID=TCONS_00010333|Name=TCONS_00010333|organism=Clytia hemisphaerica|type=transcript|length=3641bpRun BLAST on NCBI protein sequence of TCONS_00010333-protein >TCONS_00010333-protein ID=TCONS_00010333-protein|Name=TCONS_00010333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp MVTLKLIVFATVTFVILVRTDSKPQLTHEEKVAKFLKNYNEEMSRLNYERRun BLAST on NCBI transcript from alignment at sc0000104:597329..605498- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010333 ID=TCONS_00010333|Name=TCONS_00010333|organism=Clytia hemisphaerica|type=transcript|length=8170bp|location=Sequence derived from alignment at sc0000104:597329..605498- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000104:597329..605498- >TCONS_00010333 ID=TCONS_00010333|Name=TCONS_00010333|organism=Clytia hemisphaerica|type=CDS|length=1878bp|location=Sequence derived from alignment at sc0000104:597329..605498- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010333 vs. Swiss-Prot (Human)
Match: ACE (Angiotensin-converting enzyme OS=Homo sapiens GN=ACE PE=1 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 5.346e-63 Identity = 109/249 (43.78%), Postives = 153/249 (61.45%), Query Frame = 2
Query: 1172 IQVTPKLVEKNYNVSEIIRIAEKFFVSLGWPKLSESFWKRSVFTQP-ENIQMICQPAAYDMGAKFDDIPDIRMTMCGTVNEYYFNTVHHELGHVYYFMFYADLPFDFRQGANPGFHEAIGDALMLSAKTPLYLKSIGLIDQANNSTASNLNFLMTSALRTIAFLPYGALMDIWRWEIFKGNIKPEDYNRKWWELRLKYQGILPPAEGEDMDLDGAAKFHIAWDIPYIRYFFSTIFQFSFYAQACKDAXF 1915
+ VT ++++ +N + + R+AE+FF SL + FW+ S+ +P + +++C +A+D F + D R+ C V +TVHHE+GH+ Y++ Y DLP R+GANPGFHEAIGD L LS TP +L IGL+D+ N T S++N+L+ AL IAFLP+G L+D WRW +F G P YN WW LR KYQGI PP + D AKFH+ PYIRYF S + QF F+ CK+A +
Sbjct: 306 LDVTSTMLQQGWNATHMFRVAEEFFTSLELSPMPPEFWEGSMLEKPADGREVVCHASAWD----FYNRKDFRIKQCTRVTMDQLSTVHHEMGHIQYYLQYKDLPVSLRRGANPGFHEAIGDVLALSVSTPEHLHKIGLLDRVTNDTESDINYLLKMALEKIAFLPFGYLVDQWRWGVFSGRTPPSRYNFDWWYLRTKYQGICPPVTRNETHFDAGAKFHVPNVTPYIRYFVSFVLQFQFHEALCKEAGY 550 HSP 2 Score: 224.557 bits (571), Expect = 1.907e-59 Identity = 107/247 (43.32%), Postives = 148/247 (59.92%), Query Frame = 2
Query: 1172 IQVTPKLVEKNYNVSEIIRIAEKFFVSLGWPKLSESFWKRSVFTQP-ENIQMICQPAAYDMGAKFDDIPDIRMTMCGTVNEYYFNTVHHELGHVYYFMFYADLPFDFRQGANPGFHEAIGDALMLSAKTPLYLKSIGLIDQANNSTASNLNFLMTSALRTIAFLPYGALMDIWRWEIFKGNIKPEDYNRKWWELRLKYQGILPPAEGEDMDLDGAAKFHIAWDIPYIRYFFSTIFQFSFYAQACKDA 1909
+ T ++++ + + + A+ FF SLG + FW +S+ +P + +++C +A+D F + D R+ C TVN HHE+GH+ YFM Y DLP R+GANPGFHEAIGD L LS TP +L S+ L+ S ++NFLM AL IAF+P+ L+D WRW +F G+I E+YN++WW LRLKYQG+ PP D D AKFHI +PYIRYF S I QF F+ C+ A
Sbjct: 904 MDTTEAMLKQGWTPRRMFKEADDFFTSLGLLPVPPEFWNKSMLEKPTDGREVVCHASAWD----FYNGKDFRIKQCTTVNLEDLVVAHHEMGHIQYFMQYKDLPVALREGANPGFHEAIGDVLALSVSTPKHLHSLNLLSSEGGSDEHDINFLMKMALDKIAFIPFSYLVDQWRWRVFDGSITKENYNQEWWSLRLKYQGLCPPVPRTQGDFDPGAKFHIPSSVPYIRYFVSFIIQFQFHEALCQAA 1146 HSP 3 Score: 127.102 bits (318), Expect = 2.690e-29 Identity = 81/284 (28.52%), Postives = 141/284 (49.65%), Query Frame = 3
Query: 318 LTHEEKVAKFLKNYNEEMSRLNYERNVAKFDYNTNMTKFKEKLASDMDLLFSKRNSNLRTKARQFDLNKIMNHANKRQL----ELLLVSATAKEPLVTKRLNKVQAQMKKIYSEAHVPYNPKYIKTIKTDKDVLRVNQVAQIFATSTDANELLYCWKEWRNSIGPKITPLFTEMVSLLNQGARDNGFPNEAEFRKFAYEVDDLEEVVLKFWSELKPMYEELHGYIRHRLTETY-PDLIDESKGIPAHLLGNLWTTNWAALANRVKPFPDESGIQVTPKLVEKNY 1154
+T E + +KF++ Y+ + E A ++YNTN+T K+ ++ + T+AR+FD+N++ N KR + +L + A+E + NK+ M+ YS A V + ++ D + + ATS +LL+ W+ WR+ G I + + V L+NQ AR NG+ + + + YE LE+ + + + EL+P+Y LH Y+R L Y I+ IPAHLLGN+W W+ + + V PFP + T ++++ +
Sbjct: 643 VTDEAEASKFVEEYDRTSQVVWNEYAEANWNYNTNITTETSKILLQKNMQIANHTLKYGTQARKFDVNQLQNTTIKRIIKKVQDLERAALPAQE---LEEYNKILLDMETTYSVATVCHPNGSCLQLEPD--------LTNVMATSRKYEDLLWAWEGWRDKAGRAILQFYPKYVELINQAARLNGYVDAGDSWRSMYETPSLEQDLERLFQELQPLYLNLHAYVRRALHRHYGAQHINLEGPIPAHLLGNMWAQTWSNIYDLVVPFPSAPSMDTTEAMLKQGW 915 HSP 4 Score: 114.005 bits (284), Expect = 2.713e-25 Identity = 72/287 (25.09%), Postives = 135/287 (47.04%), Query Frame = 3
Query: 327 EEKVAKFLKNYNEEMSRLNYERNVAKFDYNTNMTKFKEKLASDMDLLFSKRNSNLRTKARQFDLNKIMNHANKRQLELLLVS----ATAKEPLVTKR-LNKVQAQMKKIYSEAHVPYNPKYIKTIKTDKDVLRVNQVAQIFATSTDANELLYCWKEWRNSIGPKITPLFTEMVSLLNQGARDNGFPNEAEFRKFAYEVDDLEEVVLKFWSELKPMYEELHGYIRHRLTETYPDLIDESKG-IPAHLLGNLWTTNWAALANRVKPFPDESGIQVTPKLVEKNYNVXNL 1169
E F ++YN ++ ++ A + ++TN+T + + LL + KA++ I + QL ++ + +A PL ++ N + + M +IYS A V K D D+ I A+S LL+ W+ W N+ G + PL+ + +L N+ + +GF + + + Y E+ + + +L+P+Y LH ++R L Y D +G IPAHLLG++W +W + + V PFPD+ + VT ++++ +N ++
Sbjct: 43 EAGAQLFAQSYNSSAEQVLFQSVAASWAHDTNITAENARRQEEAALLSQEFAEAWGQKAKEL-YEPIWQNFTDPQLRRIIGAVRTLGSANLPLAKRQQYNALLSNMSRIYSTAKVCLPNKTATCWSLDPDL------TNILASSRSYAMLLFAWEGWHNAAGIPLKPLYEDFTALSNEAYKQDGFTDTGAYWRSWYNSPTFEDDLEHLYQQLEPLYLNLHAFVRRALHRRYGDRYINLRGPIPAHLLGDMWAQSWENIYDMVVPFPDKPNLDVTSTMLQQGWNATHM 322 HSP 5 Score: 90.5077 bits (223), Expect = 3.842e-18 Identity = 43/96 (44.79%), Postives = 65/96 (67.71%), Query Frame = 3
Query: 1911 YFFSTIFQFSFYAQACKDAGYEGPLHLCSLENSKEAGQKLRKMLELGKSKKWPEILKQYTGSSEISAEPLIQYFXXXXXXXXXXXXXXNYTIGWDE 2198
YF S + QF F+ CK+AGYEGPLH C + S +AG KLRK+L+ G S+ W E+LK G + A+PL++YF+P+ +WL+++ ++ +GW E
Sbjct: 530 YFVSFVLQFQFHEALCKEAGYEGPLHQCDIYRSTKAGAKLRKVLQAGSSRPWQEVLKDMVGLDALDAQPLLKYFQPVTQWLQEQNQQNGEVLGWPE 625 The following BLAST results are available for this feature:
BLAST of TCONS_00010333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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