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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010331 ID=TCONS_00010331|Name=TCONS_00010331|organism=Clytia hemisphaerica|type=transcript|length=2329bp
TAAAAACATAGGAAATGAAGcttaaagaaattaaaaatgaaattgtcaat
tatATGTTGGACTTTGTTGTCATTGAAAAGATTCGTGAAGTTTGTTATCT
CTTTGACAACCTAGTTACTGTGTTTCATTGTGAATACCAATGTGGTGATA
GAATTGACACTATTTATTCTGGAAGCTTTGCTGAAGGTATTACCAATCAT
GGAGATTATGATATTATGTATATCGACAAAAGGTTCATCATTGTAGAATC
AGCTAGTGATATTCCAAAGAATTATAAGGATGGAGTATTGGTTCTTGATC
AAGATTTTTGCCATGCTGGCTATACAAGATTGCTAGTACATCAGAAATGC
Gctgacaaaaggtttaatggctatgcaagtttgaatggaaaattatactt
GGATCGTATGAAAGCCTTTAACCAAACACAACATATACATGATTTTGGGA
TTGGTATCCCACACGGACCGGCTTTCATGATTACTCCAAAACCAGACAAT
AAAGAAACAGATATGGTGCAATGCTACCAAATGCTATCTAATAATGTTGT
ACAAAAGAGATTTGACAACAAAGAATTTCATCCCAGTTTTCAGCAACAGA
GAATCATATGATTGACCATTACCCACAAGAAGATGCCAAAAAACTTGTCT
CGAAAATTGACAATGTTCGCAAGGATTTGTTTGGAAAGATATTGGCATGT
AACTTTCTCAGTATTGAAGAAATGAATGTGTTTATTTCCATCTATAAAGT
ACAGGTCAAAATAGGAGATGCACAGCTTTTGAATAGTGTCTTGTGCTCTA
TCTTAGAAAATGgctttgttgaaaaattcaataatgAGGATAAAGAAACA
TTCATTAGTAATAAGTTTTATCAACATGCTCATGTCTACATGCTTGAATT
CTTGAGATCTGCGCTAAATAGGCACCAGACCTTGTATTGGAAGAATGATA
TCCCCTTGCATAGGTCACAAGAGACTAACAATGTCATGAAAGCCCTACAA
TTCCTGACCAATGATCCCATCTTGCAGCGATTTGCAAAAATTACCGTGAT
TCGATGGCTAGTATTGACGGCATTGACAAGATATTTTGATCCAGATTATT
ATAGAAGTGCAGAAGATACCAGGAAGTTATGGGTGGATATGGAAAATTTG
TTTCTTTCCCAGGTAGAGCTTCCTGAACCATTGAACGATAATTGTGTTAG
TGGTGCAATTTATCTTGCTTTGTATTACTACGTGGTAGGAAATGAAGGCA
AAAGTGAGCacattttaaaacaatttgTAGACATTgcagtgaaaaatttg
aagccAAAATTTGTTTCAGTTCCTATTCTTTTTGTCAGTGATACTATTTT
GGGATGTCCAAATTTCCTGCAGTCAGATGAGCTGTTGCGAGGAGTTTTCG
AAGAAATCCACATACATGGTGCAGTCAGATTTTATCCACCATTTTTCGGT
GCTTATCTTTTGTATCGAATCACTGGGGATGAAGAATCTCTTAACTTGCT
GAAAGCGCTGACATCAAAGCTTGAAAACAAGATTTGTGACACTGATGCAT
CCAATTACATTCGCTACAAACTTTCAATCTTGAATGAAAAAGAGATGTTa
gatttttcttcaaaagagTTTGAATGTGGTTTGTGTAAATATTATGAACC
ACCTCAAACACATCAACCTTTCGATTTCATAGAACAAGTTAAATGGAGCC
AGCTGATCACTTTTTTCAGCTCATGTTTGTGGCATGTTGATCCTCTGACA
TCTATTGTGATTCTGCCCCTAGAGCTTTTGAGACAGTTTTTATCACAATG
AAAACATTTATATCAGAATTAATACCGAATGCTATATGAACAAATTTAGT
TTGCCCCACTTCAATAATACTTTTACATACCTTACTGGTAGAAAGTTTGT
TGACAAAAAGTGACAAAGAAATCGCATGGTGACAAAAGTATTGGCTGgtg
aatttattattttattttgtttcatacGCTCTCAGGCCTTAATTCATCTA
AAAACCTGGAGGACAATAAAACTGTTCATTGTTAATTACTAGcaacaaaa
tctttttactGATAATGTTTACtgataattcaatttttaggtttttttgt
AAGTCTGTTATAGTTGGCAAAGTCCGTTAGCTTGTTTTCACATTCACACA
CTTTTATACCTAGACAGGGTAAACTTTAAATATATTTACATAATTCAgtc
attttagctattttttttcagttatttttaaagacattttacTTGGTTTT
GTGTTTCATTCATACCTTAATAAAGGGATTTTTGCCATTTACTGTGATTG
GTGATTTctaaaaacaaagtcaaaatttg Run BLAST on NCBI transcript from alignment at sc0000104:536796..541980- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010331 ID=TCONS_00010331|Name=TCONS_00010331|organism=Clytia hemisphaerica|type=transcript|length=5185bp|location=Sequence derived from alignment at sc0000104:536796..541980- (Clytia hemisphaerica)
TAAAAACATAGGAAATGAAGCTTAAAGAAATTAAAAATGAAATTGTCAAT
TATATGTTGGACTTTGTTGTCATTGAAAAGATTCGTGAAGTTTGTTATCT
CTTTGACAACCTAGTTACTGTGTTTCATTGTGAATACCAATGTGGTGATA
GAATTGACACTATTTATTCTGGAAGCTTTGCTGAAGGTATTACCAATCAT
GGAGATTATGATATTATGTATATCGACAAAAGGTTCATCATTGTAGAATC
AGCTAGTGATATTCCAAAGAATTATAAGGATGGAGTATTGGTTCTTGATC
AAGATTTTTGCCATGCTGGCTATACAAGATTGCTAGTACATCAGAAATGC
GCTGACAAAAGGTTTAATGGCTATGCAAGTTTGAATGGAAAATTATACTT
GGATCGTATGAAAGCCTTTAACCAAACACAACATATACATGATTTTGGGA
TTGGTATCCCACACGGACCGGCTTTCATGATTACTCCAAAACCAGACAAT
AAAGAAACAGATATGGTGCAATGCTACCAAATGCTATCTAATAATGTTGT
ACAAAAGAGATTTGACAACAAAGAATTTCATCCCAGTTTTCAGCAACAGG
TTCCTATGATTCTTAATAGTGATTGCCATGTTGTTCCTGTAGCCCATGCC
CAAAGTGAGAACCCTGATATAGAGTTCAGGTTTTCTTTCTCACTCATAGA
AAAACAATTGATTCAAAAGTGGGGTATTATACAATTCAAATGCTATTTCT
TGTGTAAAGAACTGTTCAAAAACCATTTGCAAGGGGATAACGAAAATGAG
AAGGGCCTCTGCTCCTATTTTGCTAAGACTATTATTTTCTGGATGAACGA
GAAGAATCCAATAGGTTTTTGGGAGAAACACACTACAATTGAACTAGTAG
ATGAGATATTAGAAACCATGAAAGTATATCTTTTAAAAAAGTGCTGCCCT
AATTATTTCATACCAGAGAATCATATGATTGACCATTACCCACAAGAAGA
TGCCAAAAAACTTGCCTCGAAAATTGACAATGTTCGCAAGGATTTGTTTG
GAAAGATATTGGCATGTAACTTTCTCAGTATTGAAGAAATGAATGTGTTT
ATTTCCATCTATAAAGTACAGGTCAAAATAGGAGATACACAGCTTTTGAA
TAGTGTCTTGTGCTCTATCTTAGAAAATGGCTTTGTTGAAAAATTCAATA
ATGAGGATAAAGAAACATGCATTAGTAATAAGTTTTATCAACATGCTCAT
GTCTACATGCTTGAATTCTTGAGATCTGCGCTAAATAGGCACCTNCATAC
CTTACTGGTAGAAAGTTTGTTGACAAAAAGTGACAAAGAAATCGCATGGT
GACAAAAGTATTGGCTGGTGAATTTATTATTTTATTTTGTTTCATACGCT
CTCAGGCCTTAATTCATCTAAAAACCTGGAGGACAATAAAACTGTTCATT
GTTAATTACTAGCAACAAAATCTTTTTACTGATAATGTTTACTGATAATT
CAATTTTTAGGTTTTTTTGTAAGTCTGTTATAGTTGGCAAAGTCCGTTAG
CTTGTTTTCACATTCACACACTTTTATACCTAGACAGGGTAAACTTTAAA
TATATTTACATAATTCAGTCATTTTAGCTATTTTTTTTTCAGTTATTTTT
AAAGACATTTTACTTGGTTTTGTGTTTTNAAGTTATGGGTGGATATGGAA
AATTTGTTTCTTTCCCAGGTAGAGCTTCCTGAACCATTGAACGATAATTG
TGTTAGTGGTGCAATTTATCTGGCTTTGTATTACTACGTGGTAGGAAATG
AAGGCAAAAGTGAGCACATTTTAAAACAATTTGTAGACATTGCAGTGAGA
AATTTGAAGCCAAAATTTGTTTCAGTTCCTATTCTTTTTGTCAGTGATAC
TATTTTGGAATGTCCAAATTTCCTGCAGTCAGATGAGCTGTTGCGAGGAG
TTTTCGAAGAAATCCACATACATGGTGCAGTCAGATTTTATCCACCATTC
TTCGGTGCTTATCTTTTGTATCGAATCACTGGGGATGAAGAATCTATTAA
CTTGCTGAAAAGNTTGGGGTAAAATATGGGACCAAACTGTAGAAAGCAAA
AATAACTGCTTCTTTGATCTGATAAGTCTTCTTGTTGGACTTTCCCTTTC
TCCTCAAGTTTGTCATGTCAGATGTAATATGTTTAAATATGTTTAAATGG
AAAAAGACAAATTGGTATATACTTTTTACCCCCAGAAGCCCAACAATATA
GTAGGGTCAAAGGGACTTAGTTATTTTAAGGTCAAAAACAGAAAACAAAA
TAAAAATAAGATTTAAACATGGAAGATAATTGTCAATTATTTTATCTTCT
GAACTAAATTTGCCTAACACTGATTACTATCAAAACAGTTGCATTTATCA
AATTTTGGTGCAATTTTAAACTAAGTTTATTTTTTATTGATTTTCATCTT
TTTTTTATGTGATACTTTTCTTTTCTATGTAACTATTGTTAAAAACATAG
GAAATGAAGCTTAAAGAAATTAAAAATGAAATTGTCAATTATATGTTGGA
CTTTGTTGTCATTGAAAAGATTCGTGAAGTTTGTTATCTCTTTGACAACC
TAGTTACTGTGTTTCATTGTGAATACCAATGTGGTGATAGAATTGACACT
ATTTATTCTGGAAGCTTTGCTGAAGGTATTACCAATCATGGAGATTATGA
TATTATGTATATCGACAAAAGGTTCATCATTGTAGAATCAGCTAGTGATA
TTCCAAAGAATTATAAGGATGGAGTATTGGTTCTTGATCAAGATTTTTGC
CATGCTGGCTATACAAGATTGCTAGTACATCAGAAATGCGCTGACAAAAG
GTTTAATGGCTATGCAAGTTTGAATGGAAAATTATACTTGGATCGCATGA
AAGCCTTTAACCAAACACAACATATACATGATTTTGGGATTGGTATCCCA
CACGGACCAGCTTTCATGATTACTCCAAAACCAGATAATAAAGAAACAGA
TATGGTGCAATGCTACCAAATGCTATCTAATAATGTTGTACAAAAGAGAT
TTGACAACAAAGAATTTCATCCCAGTTTTCAGCAACAGGTTCCTATGATT
CTTAATAGTGATTGCCATGTTGTTCCTGTAGCCCATGCCCAAAGTGAGAA
CCCTGATATAGAGTTCAGGTTTTCTTTCTCACTCATAGAAAAACAATTGA
TTCAAAAGTGGGGTATTATACAATTCAAATGCTATTTCTTGTGTAAAGAA
CTGTTCAAAAACCATTTGCAAGGGGATAACAAAAATGAGAAGGGCCTCTG
CTCCTATTTTGCTAAGACTATTATTTTCTGGATGAACGAGAAGAATCCAA
TAGATTTTTGGGAGAAACACACTACAATTGAACTAGTAGATGAGATATTA
GAAACCATGAAAGTATATCTTTTAAAAAAGTGCTGCCCTAATTATTTCAT
ACCAGAGAATCATATGATTGACCATTACCCACAAGAAGATGCCAAAAAAC
TTGTCTCGAAAATTGACAATGTTCGCAAGGATTTGTTTGGAAAGATATTG
GCATGTAACTTTCTCAGTATTGAAGAAATGAATGTGTTTATTTCCATCTA
TAAAGTACAGGTCAAAATAGGAGATGCACAGCTTTTGAATAGTGTCTTGT
GCTCTATCTTAGAAAATGGCTTTGTTGAAAAATTCAATAATGAGGATAAA
GAAACATTCATTAGTAATAAGTTTTATCAACATGCTCATGTCTACATGCT
TGAATTCTTGAGATCTGCGCTAAATAGGCACCAGACCTTGTATTGGAAGA
ATGATATCCCCTTGCATAGGTCACAAGAGACTAACAATGTCATGAAAGCC
CTACAATTCCTGACCAATGATCCCATCTTGCAGCGATTTGCAAAAATTAC
CGTGATTCGATGGCTAGTATTGACGGCATTGACAAGATATTTTGATCCAG
ATTATTATAGAAGTGCAGAAGATACCAGGAAGTTATGGGTGGATATGGAA
AATTTGTTTCTTTCCCAGGTAGAGCTTCCTGAACCATTGAACGATAATTG
TGTTAGTGGTGCAATTTATCTTGCTTTGTATTACTACGTGGTAGGAAATG
AAGGCAAAAGTGAGCACATTTTAAAACAATTTGTAGACATTGCAGTGAAA
AATTTGAAGCCAAAATTTGTTTCAGTTCCTATTCTTTTTGTCAGTGATAC
TATTTTGGGATGTCCAAATTTCCTGCAGTCAGATGAGCTGTTGCGAGGAG
TTTTCGAAGAAATCCACATACATGGTGCAGTCAGATTTTATCCACCATTT
TTCGGTGCTTATCTTTTGTATCGAATCACTGGGGATGAAGAATCTCTTAA
CTTGCTGAAAGCGCTGACATCAAAGCTTGAAAACAAGATTTGTGACACTG
ATGCATCCAATTACATTCGCTACAAACTTTCAATCTTGAATGAAAAAGAG
ATGTTAGATTTTTCTTCAAAAGAGTTTGAATGTGGTTTGTGTAAATATTA
TGAACCACCTCAAACACATCAACCTTTCGATTTCATAGAACAAGTTAAAT
GGAGCCAGCTGATCACTTTTTTCAGCTCATGTTTGTGGCATGTTGATCCT
CTGACATCTATTGTGATTCTGCCCCTAGAGCTTTTGAGACAGTTTTTATC
ACAATGAAAACATTTATATCAGAATTAATACCGAATGCTATATGAACAAA
TTTAGTTTGCCCCACTTCAATAATACTTTTACATACCTTACTGGTAGAAA
GTTTGTTGACAAAAAGTGACAAAGAAATCGCATGGTGACAAAAGTATTGG
CTGGTGAATTTATTATTTTATTTTGTTTCATACGCTCTCAGGCCTTAATT
CATCTAAAAACCTGGAGGACAATAAAACTGTTCATTGTTAATTACTAGCA
ACAAAATCTTTTTACTGATAATGTTTACTGATAATTCAATTTTTAGGTTT
TTTTGTAAGTCTGTTATAGTTGGCAAAGTCCGTTAGCTTGTTTTCACATT
CACACACTTTTATACCTAGACAGGGTAAACTTTAAATATATTTACATAAT
TCAGTCATTTTAGCTATTTTTTTTCAGTTATTTTTAAAGACATTTTACTT
GGTTTTGTGTTTCATTCATACCTTAATAAAGGGATTTTTGCCATTTACTG
TGATTGGTGATTTCTAAAAACAAAGTCAAAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010331-exon-sc0000104-1575043694:541382..541980 | TCONS_00010331-exon-sc0000104-1575043694:541382..541980 | Clytia hemisphaerica | exon |
| TCONS_00010331-exon-sc0000104-1575043694:536796..538525 | TCONS_00010331-exon-sc0000104-1575043694:536796..538525 | Clytia hemisphaerica | exon |
| TCONS_00010331-exon-sc0000104-1510915933:541382..541980 | TCONS_00010331-exon-sc0000104-1510915933:541382..541980 | Clytia hemisphaerica | exon |
| TCONS_00010331-exon-sc0000104-1510915933:536796..538525 | TCONS_00010331-exon-sc0000104-1510915933:536796..538525 | Clytia hemisphaerica | exon |
| TCONS_00010331-exon-sc0000104-1491911889:541382..541980 | TCONS_00010331-exon-sc0000104-1491911889:541382..541980 | Clytia hemisphaerica | exon |
| TCONS_00010331-exon-sc0000104-1491911889:536796..538525 | TCONS_00010331-exon-sc0000104-1491911889:536796..538525 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:536796..541980 - |
Blast
The following BLAST results are available for this feature:
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