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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010330 ID=TCONS_00010330|Name=TCONS_00010330|organism=Clytia hemisphaerica|type=transcript|length=2841bp gtcaattatATGTTGGACTTTGTTGTCATTGAAAAGATTCGTGAAGTTTG TTATCTCTTTGACAACCTAGTTACTGTGTTTCATTGTGAATACCAATGTG GTGATAGAATTGACACTATTTATTCTGGAAGCTTTGCTGAAGGTATTACC AATCATGGAGATTATGATATTATGTATATCGACAAAAGGTTCATCATTGT AGAATCAGCTAGTGATATTCCAAAGAATTATAAGGATGGAGTATTGGTTC TTGATCAAGATTTTTGCCATGCTGGCTATACAAGATTGCTAGTACATCAG AAATGCGctgacaaaaggtttaatggctatgcaagtttgaatggaaaatt atacttGGATCGTATGAAAGCCTTTAACCAAACACAACATATACATGATT TTGGGATTGGTATCCCACACGGACCGGCTTTCATGATTACTCCAAAACCA GACAATAAAGAAACAGATATGGTGCAATGCTACCAAATGCTATCTAATAA TGTTGTACAAAAGAGATTTGACAACAAAGAATTTCATCCCAGTTTTCAGC AACAGGTTCCTATGATTCTTAATAGTGATTGCCATGTTGTTCCTGTAGCC CATGCCCAAAGTGAGAACCCTGATATAGAGTTCAGGTTTTCTTTCTCACT CATAGAAAAACAATTGATTCAAAAGTGGGGTATTATACAATTCAAATGCT ATTTCTTGTGTAAAGAACTGTTCAAAAACCATTTGCAAGGGGATAACGAA AATGAGAAGGGCCTCTGCTCCTATTTTGCTAAGACTATTATTTTCTGGAT GAACGAGAAGAATCCAATAGGTTTTTGGGAGAAACACACTACAATTGAAC TAGTAGATGAGATATTAGAAACCATGAAAGtatatcttttaaaaaagtgc TGCCCTAATTATTTCATACCAGAGAATCATATGATTGACCATTACCCACA AGAAGATGCCAAAAAACTTGCCTCGAAAATTGACAATGTTCGCAAGGATT TGTTTGGAAAGATATTGGCATGTAACTTTCTCAGTATTGAAGAAATGAAT GTGTTTATTTCCATCTATAAAGTACAGGTCAAAATAGGAGATACACAGCT TTTGAATAGTGTCTTGTGCTCTATCTTAGAAAATGgctttgttgaaaaat tcaataatgAGGATAAAGAAACATGCATTAGTAATAAGTTTTATCAACAT GCTCATGTCTACATGCTTGAATTCTTGAGATCTGCGCTAAATAGGCACCT NCATACCTTACTGGTAGAAAGTTTGTTGACAAAAAGTGACAAAGAAATCG CATGGTGACAAAAGTATTGGCTGgtgaatttattattttattttgtttca tacGCTCTCAGGCCTTAATTCATCTAAAAACCTGGAGGACAATAAAACTG TTCATTGTTAATTACTAGcaacaaaatctttttactGATAATGTTTACtg ataattcaatttttaggtttttttgtAAGTCTGTTATAGTTGGCAAAGTC CGTTAGCTTGTTTTCACATTCACACACTTTTATACCTAGACAGGGTAAAC TTTAAATATATTTACATAATTCAgtcattttagctatttttttttcagtt atttttaaagacattttacTTGGTTTTGTGTTTTNAAGTTATGGGTGGAT ATGGAAAATTTGTTTCTTTCCCAGGTAGAGCTTCCTGAACCATTGAACGA TAATTGTGTTAGTGGTGCAATTTATCTGGCTTTGTATTACTACGTGGTAG GAAATGAAGGCAAAAGTGAGCacattttaaaacaatttgTAGACATTGCA GTGAGAAATTTGAAGCCAAAATTTGTTTCAGTTCCTATTCTTTTTGTCAG TGATACTATTTTGGAATGTCCAAATTTCCTGCAGTCAGATGAGCTGTTGC GAGGAGTTTTCGAAGAAATCCACATACATGGTGCAGTCAGATTTTATCCA CCATTCTTCGGTGCTTATCTTTTGTATCGAATCACTGGGGATGAAGAATC TATTAACTTGCTGAAAACGCTGACATCAAAGCTTGAAAACAAGATTTGTG ACACTGATGCATCCAATTACATTCGCTACAAACTTTCAATCTTGAATGAA AAAGAGATGTTagatttttcttcaaaagagTTTGAATGTGGTTTGTGTAA ATATTATGAACCACCTCAAACACATCAACCTTTCGATTTCATAGAACAAG TTAAATGGAGCCAGCTGATCACTTTTTTCAGCTCATGTTTGTGGCATGTT GATCCTCTGACATCTATTGTGATTCTGCCCCTAGAGCTTTTGAGACAGTT TTTATCACAATGAAAACATTTATATCAGAATTAATACCGAATGCTATATG AACAAATTTAGTTTGCCCCACTTCAATAATACTTTTACATACCTTACTGG TAGAAAGTTTGTTGACAAAAAGTGACAAAGAAATCGCATGGTGACAAAAG TATTGGCTGgtgaatttattattttattttgtttcatacGCTCTCAGGCC TTAATTCATCTAAAAACCTGGAGGACAATAAAACTGTTCATTGTTAATTA CTAGcaacaaaatctttttactGATAATGTTTACtgataattcaattttt aggtttttttgtAAGTCTGTTATAGTTGGCAAAGTCCGTTAGCTTGTTTT CACATTCACACACTTTTATACCTAGACAGGGTAAACTTTAAATATATTTA CATAATTCAgtcattttagctattttttttcagttatttttaaagacatt ttacTTGGTTTTGTGTTTCATTCATACCTTAATAAAGGGATTTTTGCCAT TTACTGTGATTGGTGATTTctaaaaacaaagtcaaaatttg Run BLAST on NCBI protein sequence of TCONS_00010330-protein >TCONS_00010330-protein ID=TCONS_00010330-protein|Name=TCONS_00010330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp
VNYMLDFVVIEKIREVCYLFDNLVTVFHCEYQCGDRIDTIYSGSFAEGIT NHGDYDIMYIDKRFIIVESASDIPKNYKDGVLVLDQDFCHAGYTRLLVHQ KCADKRFNGYASLNGKLYLDRMKAFNQTQHIHDFGIGIPHGPAFMITPKP DNKETDMVQCYQMLSNNVVQKRFDNKEFHPSFQQQVPMILNSDCHVVPVA HAQSENPDIEFRFSFSLIEKQLIQKWGIIQFKCYFLCKELFKNHLQGDNE NEKGLCSYFAKTIIFWMNEKNPIGFWEKHTTIELVDEILETMKVYLLKKC CPNYFIPENHMIDHYPQEDAKKLASKIDNVRKDLFGKILACNFLSIEEMN VFISIYKVQVKIGDTQLLNSVLCSILENGFVEKFNNEDKETCISNKFYQH AHVYMLEFLRSALNRHXHTLLVESLLTKSDKEIAW Run BLAST on NCBI transcript from alignment at sc0000104:536796..541936- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010330 ID=TCONS_00010330|Name=TCONS_00010330|organism=Clytia hemisphaerica|type=transcript|length=5141bp|location=Sequence derived from alignment at sc0000104:536796..541936- (Clytia hemisphaerica) GTCAATTATATGTTGGACTTTGTTGTCATTGAAAAGATTCGTGAAGTTTG
TTATCTCTTTGACAACCTAGTTACTGTGTTTCATTGTGAATACCAATGTG
GTGATAGAATTGACACTATTTATTCTGGAAGCTTTGCTGAAGGTATTACC
AATCATGGAGATTATGATATTATGTATATCGACAAAAGGTTCATCATTGT
AGAATCAGCTAGTGATATTCCAAAGAATTATAAGGATGGAGTATTGGTTC
TTGATCAAGATTTTTGCCATGCTGGCTATACAAGATTGCTAGTACATCAG
AAATGCGCTGACAAAAGGTTTAATGGCTATGCAAGTTTGAATGGAAAATT
ATACTTGGATCGTATGAAAGCCTTTAACCAAACACAACATATACATGATT
TTGGGATTGGTATCCCACACGGACCGGCTTTCATGATTACTCCAAAACCA
GACAATAAAGAAACAGATATGGTGCAATGCTACCAAATGCTATCTAATAA
TGTTGTACAAAAGAGATTTGACAACAAAGAATTTCATCCCAGTTTTCAGC
AACAGGTTCCTATGATTCTTAATAGTGATTGCCATGTTGTTCCTGTAGCC
CATGCCCAAAGTGAGAACCCTGATATAGAGTTCAGGTTTTCTTTCTCACT
CATAGAAAAACAATTGATTCAAAAGTGGGGTATTATACAATTCAAATGCT
ATTTCTTGTGTAAAGAACTGTTCAAAAACCATTTGCAAGGGGATAACGAA
AATGAGAAGGGCCTCTGCTCCTATTTTGCTAAGACTATTATTTTCTGGAT
GAACGAGAAGAATCCAATAGGTTTTTGGGAGAAACACACTACAATTGAAC
TAGTAGATGAGATATTAGAAACCATGAAAGTATATCTTTTAAAAAAGTGC
TGCCCTAATTATTTCATACCAGAGAATCATATGATTGACCATTACCCACA
AGAAGATGCCAAAAAACTTGCCTCGAAAATTGACAATGTTCGCAAGGATT
TGTTTGGAAAGATATTGGCATGTAACTTTCTCAGTATTGAAGAAATGAAT
GTGTTTATTTCCATCTATAAAGTACAGGTCAAAATAGGAGATACACAGCT
TTTGAATAGTGTCTTGTGCTCTATCTTAGAAAATGGCTTTGTTGAAAAAT
TCAATAATGAGGATAAAGAAACATGCATTAGTAATAAGTTTTATCAACAT
GCTCATGTCTACATGCTTGAATTCTTGAGATCTGCGCTAAATAGGCACCT
NCATACCTTACTGGTAGAAAGTTTGTTGACAAAAAGTGACAAAGAAATCG
CATGGTGACAAAAGTATTGGCTGGTGAATTTATTATTTTATTTTGTTTCA
TACGCTCTCAGGCCTTAATTCATCTAAAAACCTGGAGGACAATAAAACTG
TTCATTGTTAATTACTAGCAACAAAATCTTTTTACTGATAATGTTTACTG
ATAATTCAATTTTTAGGTTTTTTTGTAAGTCTGTTATAGTTGGCAAAGTC
CGTTAGCTTGTTTTCACATTCACACACTTTTATACCTAGACAGGGTAAAC
TTTAAATATATTTACATAATTCAGTCATTTTAGCTATTTTTTTTTCAGTT
ATTTTTAAAGACATTTTACTTGGTTTTGTGTTTTNAAGTTATGGGTGGAT
ATGGAAAATTTGTTTCTTTCCCAGGTAGAGCTTCCTGAACCATTGAACGA
TAATTGTGTTAGTGGTGCAATTTATCTGGCTTTGTATTACTACGTGGTAG
GAAATGAAGGCAAAAGTGAGCACATTTTAAAACAATTTGTAGACATTGCA
GTGAGAAATTTGAAGCCAAAATTTGTTTCAGTTCCTATTCTTTTTGTCAG
TGATACTATTTTGGAATGTCCAAATTTCCTGCAGTCAGATGAGCTGTTGC
GAGGAGTTTTCGAAGAAATCCACATACATGGTGCAGTCAGATTTTATCCA
CCATTCTTCGGTGCTTATCTTTTGTATCGAATCACTGGGGATGAAGAATC
TATTAACTTGCTGAAAAGNTTGGGGTAAAATATGGGACCAAACTGTAGAA
AGCAAAAATAACTGCTTCTTTGATCTGATAAGTCTTCTTGTTGGACTTTC
CCTTTCTCCTCAAGTTTGTCATGTCAGATGTAATATGTTTAAATATGTTT
AAATGGAAAAAGACAAATTGGTATATACTTTTTACCCCCAGAAGCCCAAC
AATATAGTAGGGTCAAAGGGACTTAGTTATTTTAAGGTCAAAAACAGAAA
ACAAAATAAAAATAAGATTTAAACATGGAAGATAATTGTCAATTATTTTA
TCTTCTGAACTAAATTTGCCTAACACTGATTACTATCAAAACAGTTGCAT
TTATCAAATTTTGGTGCAATTTTAAACTAAGTTTATTTTTTATTGATTTT
CATCTTTTTTTTATGTGATACTTTTCTTTTCTATGTAACTATTGTTAAAA
ACATAGGAAATGAAGCTTAAAGAAATTAAAAATGAAATTGTCAATTATAT
GTTGGACTTTGTTGTCATTGAAAAGATTCGTGAAGTTTGTTATCTCTTTG
ACAACCTAGTTACTGTGTTTCATTGTGAATACCAATGTGGTGATAGAATT
GACACTATTTATTCTGGAAGCTTTGCTGAAGGTATTACCAATCATGGAGA
TTATGATATTATGTATATCGACAAAAGGTTCATCATTGTAGAATCAGCTA
GTGATATTCCAAAGAATTATAAGGATGGAGTATTGGTTCTTGATCAAGAT
TTTTGCCATGCTGGCTATACAAGATTGCTAGTACATCAGAAATGCGCTGA
CAAAAGGTTTAATGGCTATGCAAGTTTGAATGGAAAATTATACTTGGATC
GCATGAAAGCCTTTAACCAAACACAACATATACATGATTTTGGGATTGGT
ATCCCACACGGACCAGCTTTCATGATTACTCCAAAACCAGATAATAAAGA
AACAGATATGGTGCAATGCTACCAAATGCTATCTAATAATGTTGTACAAA
AGAGATTTGACAACAAAGAATTTCATCCCAGTTTTCAGCAACAGGTTCCT
ATGATTCTTAATAGTGATTGCCATGTTGTTCCTGTAGCCCATGCCCAAAG
TGAGAACCCTGATATAGAGTTCAGGTTTTCTTTCTCACTCATAGAAAAAC
AATTGATTCAAAAGTGGGGTATTATACAATTCAAATGCTATTTCTTGTGT
AAAGAACTGTTCAAAAACCATTTGCAAGGGGATAACAAAAATGAGAAGGG
CCTCTGCTCCTATTTTGCTAAGACTATTATTTTCTGGATGAACGAGAAGA
ATCCAATAGATTTTTGGGAGAAACACACTACAATTGAACTAGTAGATGAG
ATATTAGAAACCATGAAAGTATATCTTTTAAAAAAGTGCTGCCCTAATTA
TTTCATACCAGAGAATCATATGATTGACCATTACCCACAAGAAGATGCCA
AAAAACTTGTCTCGAAAATTGACAATGTTCGCAAGGATTTGTTTGGAAAG
ATATTGGCATGTAACTTTCTCAGTATTGAAGAAATGAATGTGTTTATTTC
CATCTATAAAGTACAGGTCAAAATAGGAGATGCACAGCTTTTGAATAGTG
TCTTGTGCTCTATCTTAGAAAATGGCTTTGTTGAAAAATTCAATAATGAG
GATAAAGAAACATTCATTAGTAATAAGTTTTATCAACATGCTCATGTCTA
CATGCTTGAATTCTTGAGATCTGCGCTAAATAGGCACCAGACCTTGTATT
GGAAGAATGATATCCCCTTGCATAGGTCACAAGAGACTAACAATGTCATG
AAAGCCCTACAATTCCTGACCAATGATCCCATCTTGCAGCGATTTGCAAA
AATTACCGTGATTCGATGGCTAGTATTGACGGCATTGACAAGATATTTTG
ATCCAGATTATTATAGAAGTGCAGAAGATACCAGGAAGTTATGGGTGGAT
ATGGAAAATTTGTTTCTTTCCCAGGTAGAGCTTCCTGAACCATTGAACGA
TAATTGTGTTAGTGGTGCAATTTATCTTGCTTTGTATTACTACGTGGTAG
GAAATGAAGGCAAAAGTGAGCACATTTTAAAACAATTTGTAGACATTGCA
GTGAAAAATTTGAAGCCAAAATTTGTTTCAGTTCCTATTCTTTTTGTCAG
TGATACTATTTTGGGATGTCCAAATTTCCTGCAGTCAGATGAGCTGTTGC
GAGGAGTTTTCGAAGAAATCCACATACATGGTGCAGTCAGATTTTATCCA
CCATTTTTCGGTGCTTATCTTTTGTATCGAATCACTGGGGATGAAGAATC
TCTTAACTTGCTGAAAGCGCTGACATCAAAGCTTGAAAACAAGATTTGTG
ACACTGATGCATCCAATTACATTCGCTACAAACTTTCAATCTTGAATGAA
AAAGAGATGTTAGATTTTTCTTCAAAAGAGTTTGAATGTGGTTTGTGTAA
ATATTATGAACCACCTCAAACACATCAACCTTTCGATTTCATAGAACAAG
TTAAATGGAGCCAGCTGATCACTTTTTTCAGCTCATGTTTGTGGCATGTT
GATCCTCTGACATCTATTGTGATTCTGCCCCTAGAGCTTTTGAGACAGTT
TTTATCACAATGAAAACATTTATATCAGAATTAATACCGAATGCTATATG
AACAAATTTAGTTTGCCCCACTTCAATAATACTTTTACATACCTTACTGG
TAGAAAGTTTGTTGACAAAAAGTGACAAAGAAATCGCATGGTGACAAAAG
TATTGGCTGGTGAATTTATTATTTTATTTTGTTTCATACGCTCTCAGGCC
TTAATTCATCTAAAAACCTGGAGGACAATAAAACTGTTCATTGTTAATTA
CTAGCAACAAAATCTTTTTACTGATAATGTTTACTGATAATTCAATTTTT
AGGTTTTTTTGTAAGTCTGTTATAGTTGGCAAAGTCCGTTAGCTTGTTTT
CACATTCACACACTTTTATACCTAGACAGGGTAAACTTTAAATATATTTA
CATAATTCAGTCATTTTAGCTATTTTTTTTCAGTTATTTTTAAAGACATT
TTACTTGGTTTTGTGTTTCATTCATACCTTAATAAAGGGATTTTTGCCAT
TTACTGTGATTGGTGATTTCTAAAAACAAAGTCAAAATTTG Coding sequence (CDS) from alignment at sc0000104:536796..541936- >TCONS_00010330 ID=TCONS_00010330|Name=TCONS_00010330|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at sc0000104:536796..541936- (Clytia hemisphaerica) GTCAATTATATGTTGGACTTTGTTGTCATTGAAAAGATTCGTGAAGTTTG TTATCTCTTTGACAACCTAGTTACTGTGTTTCATTGTGAATACCAATGTG GTGATAGAATTGACACTATTTATTCTGGAAGCTTTGCTGAAGGTATTACC AATCATGGAGATTATGATATTATGTATATCGACAAAAGGTTCATCATTGT AGAATCAGCTAGTGATATTCCAAAGAATTATAAGGATGGAGTATTGGTTC TTGATCAAGATTTTTGCCATGCTGGCTATACAAGATTGCTAGTACATCAG AAATGCGCTGACAAAAGGTTTAATGGCTATGCAAGTTTGAATGGAAAATT ATACTTGGATCGTATGAAAGCCTTTAACCAAACACAACATATACATGATT TTGGGATTGGTATCCCACACGGACCGGCTTTCATGATTACTCCAAAACCA GACAATAAAGAAACAGATATGGTGCAATGCTACCAAATGCTATCTAATAA TGTTGTACAAAAGAGATTTGACAACAAAGAATTTCATCCCAGTTTTCAGC AACAGGTTCCTATGATTCTTAATAGTGATTGCCATGTTGTTCCTGTAGCC CATGCCCAAAGTGAGAACCCTGATATAGAGTTCAGGTTTTCTTTCTCACT CATAGAAAAACAATTGATTCAAAAGTGGGGTATTATACAATTCAAATGCT ATTTCTTGTGTAAAGAACTGTTCAAAAACCATTTGCAAGGGGATAACGAA AATGAGAAGGGCCTCTGCTCCTATTTTGCTAAGACTATTATTTTCTGGAT GAACGAGAAGAATCCAATAGGTTTTTGGGAGAAACACACTACAATTGAAC TAGTAGATGAGATATTAGAAACCATGAAAGTATATCTTTTAAAAAAGTGC TGCCCTAATTATTTCATACCAGAGAATCATATGATTGACCATTACCCACA AGAAGATGCCAAAAAACTTGCCTCGAAAATTGACAATGTTCGCAAGGATT TGTTTGGAAAGATATTGGCATGTAACTTTCTCAGTATTGAAGAAATGAAT GTGTTTATTTCCATCTATAAAGTACAGGTCAAAATAGGAGATACACAGCT TTTGAATAGTGTCTTGTGCTCTATCTTAGAAAATGGCTTTGTTGAAAAAT TCAATAATGAGGATAAAGAAACATGCATTAGTAATAAGTTTTATCAACAT GCTCATGTCTACATGCTTGAATTCTTGAGATCTGCGCTAAATAGGCACCT NCATACCTTACTGGTAGAAAGTTTGTTGACAAAAAGTGACAAAGAAATCG CATGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00010330-exon-sc0000104-1575043694:539920..541936 | TCONS_00010330-exon-sc0000104-1575043694:539920..541936 | Clytia hemisphaerica | exon |
TCONS_00010330-exon-sc0000104-1575043694:536796..537619 | TCONS_00010330-exon-sc0000104-1575043694:536796..537619 | Clytia hemisphaerica | exon |
TCONS_00010330-exon-sc0000104-1510915933:539920..541936 | TCONS_00010330-exon-sc0000104-1510915933:539920..541936 | Clytia hemisphaerica | exon |
TCONS_00010330-exon-sc0000104-1510915933:536796..537619 | TCONS_00010330-exon-sc0000104-1510915933:536796..537619 | Clytia hemisphaerica | exon |
TCONS_00010330-exon-sc0000104-1491911889:539920..541936 | TCONS_00010330-exon-sc0000104-1491911889:539920..541936 | Clytia hemisphaerica | exon |
TCONS_00010330-exon-sc0000104-1491911889:536796..537619 | TCONS_00010330-exon-sc0000104-1491911889:536796..537619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000104 | supercontig | sc0000104:536796..541936 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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