TCONS_00010329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010329
Unique NameTCONS_00010329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010329 ID=TCONS_00010329|Name=TCONS_00010329|organism=Clytia hemisphaerica|type=transcript|length=2329bp
TAAAAACATAGGAAATGAAGcttaaagaaattaaaaatgaaattgtcaat
tatATGTTGGACTTTGTTGTCATTGAAAAGATTCGTGAAGTTTGTTATCT
CTTTGACAACCTAGTTACTGTGTTTCATTGTGAATACCAATGTGGTGATA
GAATTGACACTATTTATTCTGGAAGCTTTGCTGAAGGTATTACCAATCAT
GGAGATTATGATATTATGTATATCGACAAAAGGTTCATCATTGTAGAATC
AGCTAGTGATATTCCAAAGAATTATAAGGATGGAGTATTGGTTCTTGATC
AAGATTTTTGCCATGCTGGCTATACAAGATTGCTAGTACATCAGAAATGC
Gctgacaaaaggtttaatggctatgcaagtttgaatggaaaattatactt
GGATCGCATGAAAGCCTTTAACCAAACACAACATATACATGATTTTGGGA
TTGGTATCCCACACGGACCAGCTTTCATGATTACTCCAAAACCAGATAAT
AAAGAAACAGATATGGTGCAATGCTACCAAATGCTATCTAATAATGTTGT
ACAAAAGAGATTTGACAACAAAGAATTTCATCCCAGTTTTCAGCAACAGA
GAATCATATGATTGACCATTACCCACAAGAAGATGCCAAAAAACTTGTCT
CGAAAATTGACAATGTTCGCAAGGATTTGTTTGGAAAGATATTGGCATGT
AACTTTCTCAGTATTGAAGAAATGAATGTGTTTATTTCCATCTATAAAGT
ACAGGTCAAAATAGGAGATGCACAGCTTTTGAATAGTGTCTTGTGCTCTA
TCTTAGAAAATGgctttgttgaaaaattcaataatgAGGATAAAGAAACA
TTCATTAGTAATAAGTTTTATCAACATGCTCATGTCTACATGCTTGAATT
CTTGAGATCTGCGCTAAATAGGCACCAGACCTTGTATTGGAAGAATGATA
TCCCCTTGCATAGGTCACAAGAGACTAACAATGTCATGAAAGCCCTACAA
TTCCTGACCAATGATCCCATCTTGCAGCGATTTGCAAAAATTACCGTGAT
TCGATGGCTAGTATTGACGGCATTGACAAGATATTTTGATCCAGATTATT
ATAGAAGTGCAGAAGATACCAGGAAGTTATGGGTGGATATGGAAAATTTG
TTTCTTTCCCAGGTAGAGCTTCCTGAACCATTGAACGATAATTGTGTTAG
TGGTGCAATTTATCTTGCTTTGTATTACTACGTGGTAGGAAATGAAGGCA
AAAGTGAGCacattttaaaacaatttgTAGACATTgcagtgaaaaatttg
aagccAAAATTTGTTTCAGTTCCTATTCTTTTTGTCAGTGATACTATTTT
GGGATGTCCAAATTTCCTGCAGTCAGATGAGCTGTTGCGAGGAGTTTTCG
AAGAAATCCACATACATGGTGCAGTCAGATTTTATCCACCATTTTTCGGT
GCTTATCTTTTGTATCGAATCACTGGGGATGAAGAATCTCTTAACTTGCT
GAAAGCGCTGACATCAAAGCTTGAAAACAAGATTTGTGACACTGATGCAT
CCAATTACATTCGCTACAAACTTTCAATCTTGAATGAAAAAGAGATGTTa
gatttttcttcaaaagagTTTGAATGTGGTTTGTGTAAATATTATGAACC
ACCTCAAACACATCAACCTTTCGATTTCATAGAACAAGTTAAATGGAGCC
AGCTGATCACTTTTTTCAGCTCATGTTTGTGGCATGTTGATCCTCTGACA
TCTATTGTGATTCTGCCCCTAGAGCTTTTGAGACAGTTTTTATCACAATG
AAAACATTTATATCAGAATTAATACCGAATGCTATATGAACAAATTTAGT
TTGCCCCACTTCAATAATACTTTTACATACCTTACTGGTAGAAAGTTTGT
TGACAAAAAGTGACAAAGAAATCGCATGGTGACAAAAGTATTGGCTGgtg
aatttattattttattttgtttcatacGCTCTCAGGCCTTAATTCATCTA
AAAACCTGGAGGACAATAAAACTGTTCATTGTTAATTACTAGcaacaaaa
tctttttactGATAATGTTTACtgataattcaatttttaggtttttttgt
AAGTCTGTTATAGTTGGCAAAGTCCGTTAGCTTGTTTTCACATTCACACA
CTTTTATACCTAGACAGGGTAAACTTTAAATATATTTACATAATTCAgtc
attttagctattttttttcagttatttttaaagacattttacTTGGTTTT
GTGTTTCATTCATACCTTAATAAAGGGATTTTTGCCATTTACTGTGATTG
GTGATTTctaaaaacaaagtcaaaatttg
Run BLAST on NCBI

transcript from alignment at sc0000104:536796..539491-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010329 ID=TCONS_00010329|Name=TCONS_00010329|organism=Clytia hemisphaerica|type=transcript|length=2696bp|location=Sequence derived from alignment at sc0000104:536796..539491- (Clytia hemisphaerica)
TAAAAACATAGGAAATGAAGCTTAAAGAAATTAAAAATGAAATTGTCAAT
TATATGTTGGACTTTGTTGTCATTGAAAAGATTCGTGAAGTTTGTTATCT
CTTTGACAACCTAGTTACTGTGTTTCATTGTGAATACCAATGTGGTGATA
GAATTGACACTATTTATTCTGGAAGCTTTGCTGAAGGTATTACCAATCAT
GGAGATTATGATATTATGTATATCGACAAAAGGTTCATCATTGTAGAATC
AGCTAGTGATATTCCAAAGAATTATAAGGATGGAGTATTGGTTCTTGATC
AAGATTTTTGCCATGCTGGCTATACAAGATTGCTAGTACATCAGAAATGC
GCTGACAAAAGGTTTAATGGCTATGCAAGTTTGAATGGAAAATTATACTT
GGATCGCATGAAAGCCTTTAACCAAACACAACATATACATGATTTTGGGA
TTGGTATCCCACACGGACCAGCTTTCATGATTACTCCAAAACCAGATAAT
AAAGAAACAGATATGGTGCAATGCTACCAAATGCTATCTAATAATGTTGT
ACAAAAGAGATTTGACAACAAAGAATTTCATCCCAGTTTTCAGCAACAGG
TTCCTATGATTCTTAATAGTGATTGCCATGTTGTTCCTGTAGCCCATGCC
CAAAGTGAGAACCCTGATATAGAGTTCAGGTTTTCTTTCTCACTCATAGA
AAAACAATTGATTCAAAAGTGGGGTATTATACAATTCAAATGCTATTTCT
TGTGTAAAGAACTGTTCAAAAACCATTTGCAAGGGGATAACAAAAATGAG
AAGGGCCTCTGCTCCTATTTTGCTAAGACTATTATTTTCTGGATGAACGA
GAAGAATCCAATAGATTTTTGGGAGAAACACACTACAATTGAACTAGTAG
ATGAGATATTAGAAACCATGAAAGTATATCTTTTAAAAAAGTGCTGCCCT
AATTATTTCATACCAGAGAATCATATGATTGACCATTACCCACAAGAAGA
TGCCAAAAAACTTGTCTCGAAAATTGACAATGTTCGCAAGGATTTGTTTG
GAAAGATATTGGCATGTAACTTTCTCAGTATTGAAGAAATGAATGTGTTT
ATTTCCATCTATAAAGTACAGGTCAAAATAGGAGATGCACAGCTTTTGAA
TAGTGTCTTGTGCTCTATCTTAGAAAATGGCTTTGTTGAAAAATTCAATA
ATGAGGATAAAGAAACATTCATTAGTAATAAGTTTTATCAACATGCTCAT
GTCTACATGCTTGAATTCTTGAGATCTGCGCTAAATAGGCACCAGACCTT
GTATTGGAAGAATGATATCCCCTTGCATAGGTCACAAGAGACTAACAATG
TCATGAAAGCCCTACAATTCCTGACCAATGATCCCATCTTGCAGCGATTT
GCAAAAATTACCGTGATTCGATGGCTAGTATTGACGGCATTGACAAGATA
TTTTGATCCAGATTATTATAGAAGTGCAGAAGATACCAGGAAGTTATGGG
TGGATATGGAAAATTTGTTTCTTTCCCAGGTAGAGCTTCCTGAACCATTG
AACGATAATTGTGTTAGTGGTGCAATTTATCTTGCTTTGTATTACTACGT
GGTAGGAAATGAAGGCAAAAGTGAGCACATTTTAAAACAATTTGTAGACA
TTGCAGTGAAAAATTTGAAGCCAAAATTTGTTTCAGTTCCTATTCTTTTT
GTCAGTGATACTATTTTGGGATGTCCAAATTTCCTGCAGTCAGATGAGCT
GTTGCGAGGAGTTTTCGAAGAAATCCACATACATGGTGCAGTCAGATTTT
ATCCACCATTTTTCGGTGCTTATCTTTTGTATCGAATCACTGGGGATGAA
GAATCTCTTAACTTGCTGAAAGCGCTGACATCAAAGCTTGAAAACAAGAT
TTGTGACACTGATGCATCCAATTACATTCGCTACAAACTTTCAATCTTGA
ATGAAAAAGAGATGTTAGATTTTTCTTCAAAAGAGTTTGAATGTGGTTTG
TGTAAATATTATGAACCACCTCAAACACATCAACCTTTCGATTTCATAGA
ACAAGTTAAATGGAGCCAGCTGATCACTTTTTTCAGCTCATGTTTGTGGC
ATGTTGATCCTCTGACATCTATTGTGATTCTGCCCCTAGAGCTTTTGAGA
CAGTTTTTATCACAATGAAAACATTTATATCAGAATTAATACCGAATGCT
ATATGAACAAATTTAGTTTGCCCCACTTCAATAATACTTTTACATACCTT
ACTGGTAGAAAGTTTGTTGACAAAAAGTGACAAAGAAATCGCATGGTGAC
AAAAGTATTGGCTGGTGAATTTATTATTTTATTTTGTTTCATACGCTCTC
AGGCCTTAATTCATCTAAAAACCTGGAGGACAATAAAACTGTTCATTGTT
AATTACTAGCAACAAAATCTTTTTACTGATAATGTTTACTGATAATTCAA
TTTTTAGGTTTTTTTGTAAGTCTGTTATAGTTGGCAAAGTCCGTTAGCTT
GTTTTCACATTCACACACTTTTATACCTAGACAGGGTAAACTTTAAATAT
ATTTACATAATTCAGTCATTTTAGCTATTTTTTTTCAGTTATTTTTAAAG
ACATTTTACTTGGTTTTGTGTTTCATTCATACCTTAATAAAGGGATTTTT
GCCATTTACTGTGATTGGTGATTTCTAAAAACAAAGTCAAAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005795XLOC_005795Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010329-exon-sc0000104-1575043694:538893..539491TCONS_00010329-exon-sc0000104-1575043694:538893..539491Clytia hemisphaericaexon
TCONS_00010329-exon-sc0000104-1575043694:536796..538525TCONS_00010329-exon-sc0000104-1575043694:536796..538525Clytia hemisphaericaexon
TCONS_00010329-exon-sc0000104-1510915933:538893..539491TCONS_00010329-exon-sc0000104-1510915933:538893..539491Clytia hemisphaericaexon
TCONS_00010329-exon-sc0000104-1510915933:536796..538525TCONS_00010329-exon-sc0000104-1510915933:536796..538525Clytia hemisphaericaexon
TCONS_00010329-exon-sc0000104-1491911889:538893..539491TCONS_00010329-exon-sc0000104-1491911889:538893..539491Clytia hemisphaericaexon
TCONS_00010329-exon-sc0000104-1491911889:536796..538525TCONS_00010329-exon-sc0000104-1491911889:536796..538525Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:536796..539491 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.356753	0.408484	0.438053	0.282243	0.885714	0.729688	0.691568	0.288413	0.348525	0.089629	0.148538	0.124019	0.127842	0.257326	0.528044	0.837074	0.356738	0.348812	1.01397	0.0660601	0.280954	0.884635	0.974631	0.991323	0.0956231	0.197429	0.204468	0	0.129465	0.378739
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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