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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010328 ID=TCONS_00010328|Name=TCONS_00010328|organism=Clytia hemisphaerica|type=transcript|length=3094bpRun BLAST on NCBI protein sequence of TCONS_00010328-protein >TCONS_00010328-protein ID=TCONS_00010328-protein|Name=TCONS_00010328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp MGSDNYDSSTKEDEDDVDDIKLTGCGALPCCDPRSAGHRFTVLIFICFLSRun BLAST on NCBI transcript from alignment at sc0000104:522507..536135- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010328 ID=TCONS_00010328|Name=TCONS_00010328|organism=Clytia hemisphaerica|type=transcript|length=13629bp|location=Sequence derived from alignment at sc0000104:522507..536135- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000104:522507..536135- >TCONS_00010328 ID=TCONS_00010328|Name=TCONS_00010328|organism=Clytia hemisphaerica|type=CDS|length=27132bp|location=Sequence derived from alignment at sc0000104:522507..536135- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010328 vs. Swiss-Prot (Human)
Match: MFSD1 (Major facilitator superfamily domain-containing protein 1 OS=Homo sapiens GN=MFSD1 PE=2 SV=2) HSP 1 Score: 513.072 bits (1320), Expect = 4.621e-171 Identity = 271/428 (63.32%), Postives = 342/428 (79.91%), Query Frame = 1
Query: 265 CDPRSAGHRFTVLIFICFLSFGSYFCFDNPAALQKQITTDMKVNTEKFMLLYSLYSWPNVVLCFFGGFLLDKVFGIRLGTIIFGLFVCVGQVIFSLGAVFDSYTMMEAGRFVFGIGGESLAVAQNTYAVSWFKGAELNMVFGLQLSFSRVGSTVNMNVMGPMYKFLEKRIDKESYVILGWTLMVGXXXXXXXXXXXXXXXXXDKRAARILKKQDAQTGEEIRITDVKDFPLSVWLIFIICVTYYVAVFPFISLGLVYFEAKYDLDASKANIVNSLVYLISAGASPILGLYVDKVGYNLYQLIAAICMTIGAHAMLAFSTTISPYIAMSVMGIGYSLLACALWPLVAMIVPEYQLGTAYGFMQSIQNLGLAVVSIIAGSIVDNRGYLILEVFFXXXXXXXXXXXXXXXXXXXXXXXXXNLSAKVRKEAK 1548
CDP HR VL+ +CFL FGSYFC+DNPAALQ Q+ DM+VNT KFMLLY+ YSWPNVVLCFFGGFL+D+VFGIR GTIIF FVC+GQV+F+LG +F+++ +ME GRFVFGIGGESLAVAQNTYAVSWFKG ELN+VFGLQLS +R+GSTVNMN+MG +Y +E + + LG TLM+G + C+LSL C+LA+A+ D+RA RIL K+ +TGE I++TDVKDF L +WLIFIICV YYVAVFPFI LG V+F K+ + A+ +NS+VY+ISA SP+ GL VDK G N+ ++ A+ T+ +H MLAF T +P+IAM ++G+ YSLLACALWP+VA +VPE+QLGTAYGFMQSIQNLGLA++SIIAG I+D+RGYL LEVFF+AC+SL+L+S +LLYL + + LN SA+ R+E K
Sbjct: 34 CDPSRLAHRLLVLLLMCFLGFGSYFCYDNPAALQTQVKRDMQVNTTKFMLLYAWYSWPNVVLCFFGGFLIDRVFGIRWGTIIFSCFVCIGQVVFALGGIFNAFWLMEFGRFVFGIGGESLAVAQNTYAVSWFKGKELNLVFGLQLSMARIGSTVNMNLMGWLYSKIEALLGSAGHTTLGITLMIGGITCILSLICALALAYLDQRAERILHKEQGKTGEVIKLTDVKDFSLPLWLIFIICVCYYVAVFPFIGLGKVFFTEKFGFSSQAASAINSVVYVISAPMSPVFGLLVDKTGKNIIWVLCAVAATLVSHMMLAF-TMWNPWIAMCLLGLSYSLLACALWPMVAFVVPEHQLGTAYGFMQSIQNLGLAIISIIAGMILDSRGYLFLEVFFIACVSLSLLSVVLLYLVNRAQGGNLNYSARQREEIK 460 The following BLAST results are available for this feature:
BLAST of TCONS_00010328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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