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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010327 ID=TCONS_00010327|Name=TCONS_00010327|organism=Clytia hemisphaerica|type=transcript|length=3720bpRun BLAST on NCBI transcript from alignment at sc0000104:470609..522005- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010327 ID=TCONS_00010327|Name=TCONS_00010327|organism=Clytia hemisphaerica|type=transcript|length=51397bp|location=Sequence derived from alignment at sc0000104:470609..522005- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010327 vs. Swiss-Prot (Human)
Match: AT1B2 (Sodium/potassium-transporting ATPase subunit beta-2 OS=Homo sapiens GN=ATP1B2 PE=1 SV=3) HSP 1 Score: 83.1889 bits (204), Expect = 6.024e-17 Identity = 78/262 (29.77%), Postives = 118/262 (45.04%), Query Frame = 2
Query: 1592 KFLYNGETGEVMGRSGNSWAKIGFFYLVFYGFLAGFFSAMLAVFMTTIEKPEDGGRPKLTQFIANKPGITTLGKLSLLDGYDANSTTSDYAEGIQKY--FEEMKNNSLYKGECPIGR-NETFEKP-----------CYAPSSIYGDCAPEADLSTSMFGVKDEKPCVFIRINRVREWVPEETGKYLKLECSGTGFSKQWPEG-FLM---NG------FPYMGG----NYELPWVAVQ-LDATVK-GLKVRCELKGKGISVSD 2287
+F++N T + MGR+G SWA I FYLVFYGFL F+ + V + T+ PK +A PG+ K LD S T + + +QK F E N+S+ + + R +E+P C + G+C+ D ++ +G +PCVFI++NRV + + + + C+G G F+M NG FPY G NY P VAV+ L+ T + V C + I+ D
Sbjct: 19 EFVWNPRTHQFMGRTGTSWAFILLFYLVFYGFLTAMFTLTMWVMLQTVS----DHTPKYQDRLAT-PGLMIRPKTENLDVIVNVSDTESWDQHVQKLNKFLEPYNDSIQAQKNDVCRPGRYYEQPDNGVLNYPKRACQFNRTQLGNCSGIGD--STHYGYSTGQPCVFIKMNRVINFYA-GANQSMNVTCAGKRDEDAENLGNFVMFPANGNIDLMYFPYYGKKFHVNYTQPLVAVKFLNVTPNVEVNVECRINAANIATDD 272 The following BLAST results are available for this feature:
BLAST of TCONS_00010327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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