TCONS_00010311 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010311
Unique NameTCONS_00010311
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010311 ID=TCONS_00010311|Name=TCONS_00010311|organism=Clytia hemisphaerica|type=transcript|length=566bp
TCAACACTGATTCGTCAACAGTCAAAAGTTTGGATCAAGTTTCAAATGAT
TTCAgtaaattgtcaaaaattcaaatcaaagatTTAGAGCTCTTTCAGAC
AGCAACTGGAAATTACATCGAAGGTCGCTTGATATCTAGGCCATATGTTT
CGACCGGCATAACAACCTTTATGGAAGATGATAAAGGAGACTTTATAAAA
CTTGGTTTGTATAATATGGTTCCGGTTAACGAATCTAAGGCTCAAGCAAG
TGCCATGAAATTCCCAATTGGTGCCAAAATCCGAATCAGTGAGCCTTTCT
ATAAGATCTTTCGAGATGGAAACCATGGTATTCGAGTCGACTCTCCTGCA
GAGATTCAAGTTTACAAAGAAGGGGAGATGAATGATTTTCTTGAAGCTCG
TGAAGAAGggaaaaagcttttcaaagcAGGCAACCACCTTCAAGCTTTAT
GAGGTTTATTATGATGCTTTAAGACAGCAGTCTGGTGATCTTATCAAATT
TCTGACAAAGCGAGCTCAAATTGAGTTTAATATCGGAAACTATATGGAAG
CTTTGTTTGATTCTGC
Run BLAST on NCBI

protein sequence of TCONS_00010311-protein

>TCONS_00010311-protein ID=TCONS_00010311-protein|Name=TCONS_00010311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
NTDSSTVKSLDQVSNDFSKLSKIQIKDLELFQTATGNYIEGRLISRPYVS
TGITTFMEDDKGDFIKLGLYNMVPVNESKAQASAMKFPIGAKIRISEPFY
KIFRDGNHGIRVDSPAEIQVYKEGEMNDFLEAREEGKKLFKAGNHLQAL
Run BLAST on NCBI

transcript from alignment at sc0000104:282159..282776-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010311 ID=TCONS_00010311|Name=TCONS_00010311|organism=Clytia hemisphaerica|type=transcript|length=618bp|location=Sequence derived from alignment at sc0000104:282159..282776- (Clytia hemisphaerica)
TCAACACTGATTCGTCAACAGTCAAAAGTTTGGATCAAGTTTCAAATGAT
TTCAGTAAATTGTCAAAAATTCAAATCAAAGATTTAGAGCTCTTTCAGAC
AGCAACTGGAAATTACATCGAAGGTCGCTTGATATCTAGGCCATATGTTT
CGACCGGCATAACAACCTTTATGGAAGATGATAAAGGAGACTTTATAAAA
CTTGGTTTGTATAATATGGTTCCGGTTAACGAATCTAAGGCTTAAGCGAG
TGCCATGAAATTCCCAATTNGTTCCGGTTAACGAATCTAAGGCTCAAGCA
AGTGCCATGAAATTCCCAATTGGTGCCAAAATCCGAATCAGTGAGCCTTT
CTATAAGATCTTTCGAGATGGAAACCATGGTATTCGAGTCGACTCTCCTG
CAGAGATTCAAGTTTACAAAGAAGGGGAGATGAATGATTTTCTTGAAGCT
CGTGAAGAAGGGAAAAAGCTTTTCAAAGCAGGCAACCACCTTCAAGCTTT
ATGAGGTTTATTATGATGCTTTAAGACAGCAGTCTGGTGATCTTATCAAA
TTTCTGACAAAGCGAGCTCAAATTGAGTTTAATATCGGAAACTATATGGA
AGCTTTGTTTGATTCTGC

Coding sequence (CDS) from alignment at sc0000104:282159..282776-

>TCONS_00010311 ID=TCONS_00010311|Name=TCONS_00010311|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0000104:282159..282776- (Clytia hemisphaerica)
GCTCAAGCAAGTGCCATGAAATTCCCAATTGGTGCCAAAATCCGAATCAG
TGAGCCTTTCTATAAGATCTTTCGAGATGGAAACCATGGTATTCGAGTCG
ACTCTCCTGCAGAGATTCAAGTTTACAAAGAAGGGGAGATGAATGATTTT
CTTGAAGCTCGTGAAGAAGGGAAAAAGCTTTTCAAAGCAGGCAACCACCT
TCAAGCTTTATGAAACACTGATTCGTCAACAGTCAAAAGTTTGGATCAAG
TTTCAAATGATTTCAGTAAATTGTCAAAAATTCAAATCAAAGATTTAGAG
CTCTTTCAGACAGCAACTGGAAATTACATCGAAGGTCGCTTGATATCTAG
GCCATATGTTTCGACCGGCATAACAACCTTTATGGAAGATGATAAAGGAG
ACTTTATAAAACTTGGTTTGTATAATATGGTTCCGGTTAACGAATCTAAG
GCTCAAGCAAGTGCCATGAAATTCCCAATTGGTGCCAAAATCCGAATCAG
TGAGCCTTTCTATAAGATCTTTCGAGATGGAAACCATGGTATTCGAGTCG
ACTCTCCTGCAGAGATTCAAGTTTACAAAGAAGGGGAGATGAATGATTTT
CTTGAAGCTCGTGAAGAAGGGAAAAAGCTTTTCAAAGCAGGCAACCACCT
TCAAGCTTTATGAAACACTGATTCGTCAACAGTCAAAAGTTTGGATCAAG
TTTCAAATGATTTCAGTAAATTGTCAAAAATTCAAATCAAAGATTTAGAG
CTCTTTCAGACAGCAACTGGAAATTACATCGAAGGTCGCTTGATATCTAG
GCCATATGTTTCGACCGGCATAACAACCTTTATGGAAGATGATAAAGGAG
ACTTTATAAAACTTGGTTTGTATAATATGGTTCCGGTTAACGAATCTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005789XLOC_005789Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010311-proteinTCONS_00010311-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010311-exon-sc0000104-1575043694:282538..282776TCONS_00010311-exon-sc0000104-1575043694:282538..282776Clytia hemisphaericaexon
TCONS_00010311-exon-sc0000104-1575043694:282159..282485TCONS_00010311-exon-sc0000104-1575043694:282159..282485Clytia hemisphaericaexon
TCONS_00010311-exon-sc0000104-1510915933:282538..282776TCONS_00010311-exon-sc0000104-1510915933:282538..282776Clytia hemisphaericaexon
TCONS_00010311-exon-sc0000104-1510915933:282159..282485TCONS_00010311-exon-sc0000104-1510915933:282159..282485Clytia hemisphaericaexon
TCONS_00010311-exon-sc0000104-1491911889:282538..282776TCONS_00010311-exon-sc0000104-1491911889:282538..282776Clytia hemisphaericaexon
TCONS_00010311-exon-sc0000104-1491911889:282159..282485TCONS_00010311-exon-sc0000104-1491911889:282159..282485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:282159..282776 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.0840779	0	0.387874	0.0727764	0.185713	0	0.306302	1.04143	0	0.187468	0	0.749246	0	0	0.586322	0.942042	0.591092	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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