|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010309 ID=TCONS_00010309|Name=TCONS_00010309|organism=Clytia hemisphaerica|type=transcript|length=1793bp
TgatgaaacattttttctcaaCAACATGTTTTAGAAGACTGGTACCTAAC
AAGTTAAGGAGTACTGCATAATTGTCTTCGACTGTCTTAGTTTAACAGTT
AATCGACTGTTTTAGTTAAACGGTTAATTCAAGAGCGCAAAAATTTTCTG
CAAAACTTTGACGcaatatttgaatgtatttttacaaaaaatatgtcACC
ATTACCTCGATTACTACTTTGGATTGCTCTTGTCTTTTTTAACCAGCTAT
CAAATGATTTCGTTTTGGCTACCGATTCAACTGTCCAAATACCCGAACTG
AcatttgatgatgtcatcaatgACGTCATGGTACTTGAAGATCCAATCAG
ATCGTTTCATTTGGATAACACGTGGTCTTGTTTGAAAGAATGCATGAAAA
TGTTTCCATTGTGTAACGCTATCAATTTGAACCCTAAGAGATCAATTTGC
AAATTGTTTGAATGTGAAGAAAAAAGATCTTTGGCAATGCAGGAGTCACA
AGGATGGATTTATTATGGCACCAATAATAACGAGGCTTGTCAACCGTCTT
CTTCAGAATCTACAGAGAAAACAGATACCAAAACATCACCAGTAACAACG
AAAAGTCCAACACTCAAACCTCTTAACAACTCTGCTCAGACATTGATGAC
GACTTCAATAGATACGACGACAACGACAGATGTGACAGAGCCGGGAATTA
AAACGACAACGTCAAGAGAAACTCCTACTTATACGACGACAACGAAAGAT
GTGACAGAGCCGGGAATTGAAACGACAACGTCAAGAGAAACTTCTAGTTA
TACGACGATAACGACAGACACGTCTGGATCGGGATCGGGATCAGGAACAC
CGAGCGAAGCACCTACTACGACTGGGACTGTGACAACAACCAAAGATGAT
ATAGTTACTCCTAAGGAAGTTGAATGCGATTGGTTCGAAAAGGGGATTAA
AACAAATTATTTCCGAGAAGGAACACAAGTTGCATCAACAGAGGAATGTA
AAAACCACTGCTATGCTTTGAAAGAAAGAAGTAACAGCAATATTGGTGGA
ATTACTGTTCTTATTGACCAAAATCAATTGACTATGGAATGCTTTTGCCA
TACTACATTCTGGGTGTCAACTTCGGATCCAAAATACTTGTCTTGTAAAT
TTATTTAAAGTTTTTAGCGATTACTAACCCAGCTGACACACAAAGTTGTT
TCAACGTTAATCTTACGTTATTTGGACGTTGTGAATATTATATAAACGCT
GAAAAAACGTTGTGTGTCAGCCGGGATTAGTTTGAGAGTTATGTGAGCTC
TCATCCTATCCGATTATTTGATGGTGTATTGGCAGTCGCACACACTAAAG
CTTTATAAGTATTGCGATAATTTTACCATTGTAGAGAGGTCATTGCTTTG
AGACACTCACGGATAGAGAAATTTGACGGCGTTCGAATCTGGTGAAGTTT
CTCTGGTAGCATCAGGACACACAGATATCTTAAATAAAATACGAGATAGA
GCTTTCCTTTCCCTATTTGAAGCAAAATAATGTGGTATCTTAAAGGTTTT
ATTTTTACATAAGTGTTCCCGTTTCATATCAGACACATATTTCATTTCAA
GACAGTGTCAACCTATTGTTCTATTATGCTGATATAAGGTCGAAAATCGT
TCATGTGAGAGACTTCGAAAATTTTGTCCCCTTTGTGACACCTTCTTTTC
CTAAGTACACCTTCCCCGTCTCCCCGGGGTACTGTACGATCTCGTTGTGG
TACCGGCCTTTGGAGAGGTCTTTTATAGTCTTTCCAAACACTG Run BLAST on NCBI transcript from alignment at sc0000104:231028..233927- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010309 ID=TCONS_00010309|Name=TCONS_00010309|organism=Clytia hemisphaerica|type=transcript|length=2900bp|location=Sequence derived from alignment at sc0000104:231028..233927- (Clytia hemisphaerica)
TGATGAAACATTTTTTCTCAACAACATGTTTTAGAAGACTGGTACCTAAC
AAGTTAAGGAGTACTGCATAATTGTCTTCGACTGTCTTAGTTTAACAGTT
AATCGACTGTTTTAGTTAAACGGTTAATTCAAGAGCGCAAAAATTTTCTG
CAAAACTTTGACGCAATATTTGAATGTATTTTTACAAAAAATATGTCACC
ATTACCTCGATTACTACTTTGGATTGCTCTTGTCTTTTTTAACCAGCTAT
CAAATGATTTCGTTTTGGCTACCGATTCAACTGTCCAAATACCCGAACTG
ACATTTGATGATGTCATCAATGACGTCATGGTACTTGAAGATCCAATCAG
ATCGTTTCATTTGGATAACACGTGGTCTTGTTTGAAAGAATGCATGAAAA
TGTTTCCATTGTGTAACGCTATCAATTTGAACCCTAAGAGATCAATTTGC
AAATTGTTTGAATGTGAAGAAAAAAGATCTTTGGCAATGCAGGAGTCACA
AGGATGGATTTATTATGGCACCAATAATAACGAGGTTTACACTAATAAAT
TACACGTTATCAATTGAGTCAGTAAAATTACTCTTAGGTTCCAAATAAAC
AAGGGGGGGTTCGAAAATTTTCGAGATTTTAATAAACGTGGGGGAACCTA
ATTGCCAGGGGGGTTGGAAACGCCAAAATAAGGTAAATATAGGCTAAAAT
CAGGCCATTTAGAGCAAAATGAGGGGCCTTCTCTTTGAAAGCTGAAAATA
TTCTTAAAAGTTAATAGACGGGGGGGGGGAGGGGGGTCCTAAGGTCCGGG
GGTTGGAAAATTTTCGAAAAATTAACAAGCGGGTGGTGGGTGTTTATTTT
GAACCTGAGAGCGGTACAAATACAAATAACTTATGAGGGGTTTTGAGATT
ACTATGAGAAATCTTTATTCAAAATTGAAGATGAAAAAGACAAGAAATCA
ACTGTTTTTTATTATGTGCTAATTTTGTATGGTTATACAATAATTCTCCG
TTTTACACTTTTTAAAAATCCTATCTAAAATTACAAATGCGAATAACTTT
TGATAGTTTTCACATCAATTCCTTCTTATAGGCTTGTCAACCGTCTTCTT
CAGAATCTACAGAGAAAACAGATACCAAAACATCACCAGTAACAACGAAA
AGTCCAACACTCAAACCTCTTAACAACTCTGCTCAGACATTGATGACGAC
TTCAATAGATACGACGACAACGACAGATGTGACAGAGCCGGGAATTAAAA
CGACAACGTCAAGAGAAACTCCTACTTATACGACGACAACGAAAGATGTG
ACAGAGCCGGGAATTGAAACGACAACGTCAAGAGAAACTTCTAGTTATAC
GACGATAACGACAGACACGTCTGGATCGGGATCGGGATCAGGAACACCGA
GCGAAGCACCTACTACGACTGGGACTGTGACAACAACCAAAGATGATATA
GTTACTCCTAAGGAAGGTTAGTTTATGGATGTCTCTTTAACGACATTTTT
ATATTTTTTCAAAAAATATGATATTCTTATAGAAGATATTCTTATTAAAA
AAATGTGTGTCAATCGTGTAATCCCTTTAAAGAGAGAAAGGTTGTCTGTA
CACAGACCCAGTATCTAGGGCTAATTTCAAAATTCATTGCCGTAGAGAGT
CTGTTGTCATTGTCTTTTCTTATTTGAGATTTTTCAAACTGATCGCTGCA
ATGAAGTGTTGGTGAAAGAGGGGAGACGATAAGAGAAGTGTTGCTATTTA
TAAATCAAACTTAATCGCAGAGGTCTCCGTACGGGAATTTTTTTTATCAA
ACAGACAATGCGCACAGAGTGTACTACGAAGCGATAAATGTGAGATGAAT
CTGGTATAGAGTAAGAGAAAGGTGACTCAACCAAAAAACGCACAATTTGA
CCACGGGCACCGTAAACTGCACATGATCCAAAGCATGCTCCTGAACTAGG
CTAGGTAGTAGAGATTCTTCATTCTCATCGGCTTAAAATAAAATCTATCT
TCAGTACGTATTCTTTCTTTTTATAGTTGAATGCGATTGGTTCGAAAAGG
GGATTAAAACAAATTATTTCCGAGAAGGAACACAAGTTGCATCAACAGAG
GAATGTAAAAACCACTGCTATGCTTTGAAAGAAAGAAGTAACAGCAATAT
TGGTGGAATTACTGTTCTTATTGACCAAAATCAATTGACTATGGAATGCT
TTTGCCATACTACATTCTGGGTGTCAACTTCGGATCCAAAATACTTGTCT
TGTAAATTTATTTAAAGTTTTTAGCGATTACTAACCCAGCTGACACACAA
AGTTGTTTCAACGTTAATCTTACGTTATTTGGACGTTGTGAATATTATAT
AAACGCTGAAAAAACGTTGTGTGTCAGCCGGGATTAGTTTGAGAGTTATG
TGAGCTCTCATCCTATCCGATTATTTGATGGTGTATTGGCAGTCGCACAC
ACTAAAGCTTTATAAGTATTGCGATAATTTTACCATTGTAGAGAGGTCAT
TGCTTTGAGACACTCACGGATAGAGAAATTTGACGGCGTTCGAATCTGGT
GAAGTTTCTCTGGTAGCATCAGGACACACAGATATCTTAAATAAAATACG
AGATAGAGCTTTCCTTTCCCTATTTGAAGCAAAATAATGTGGTATCTTAA
AGGTTTTATTTTTACATAAGTGTTCCCGTTTCATATCAGACACATATTTC
ATTTCAAGACAGTGTCAACCTATTGTTCTATTATGCTGATATAAGGTCGA
AAATCGTTCATGTGAGAGACTTCGAAAATTTTGTCCCCTTTGTGACACCT
TCTTTTCCTAAGTACACCTTCCCCGTCTCCCCGGGGTACTGTACGATCTC
GTTGTGGTACCGGCCTTTGGAGAGGTCTTTTATAGTCTTTCCAAACACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010309-exon-sc0000104-1575043694:233394..233927 | TCONS_00010309-exon-sc0000104-1575043694:233394..233927 | Clytia hemisphaerica | exon |
| TCONS_00010309-exon-sc0000104-1575043694:232462..232846 | TCONS_00010309-exon-sc0000104-1575043694:232462..232846 | Clytia hemisphaerica | exon |
| TCONS_00010309-exon-sc0000104-1575043694:231028..231901 | TCONS_00010309-exon-sc0000104-1575043694:231028..231901 | Clytia hemisphaerica | exon |
| TCONS_00010309-exon-sc0000104-1510915933:233394..233927 | TCONS_00010309-exon-sc0000104-1510915933:233394..233927 | Clytia hemisphaerica | exon |
| TCONS_00010309-exon-sc0000104-1510915933:232462..232846 | TCONS_00010309-exon-sc0000104-1510915933:232462..232846 | Clytia hemisphaerica | exon |
| TCONS_00010309-exon-sc0000104-1510915933:231028..231901 | TCONS_00010309-exon-sc0000104-1510915933:231028..231901 | Clytia hemisphaerica | exon |
| TCONS_00010309-exon-sc0000104-1491911889:233394..233927 | TCONS_00010309-exon-sc0000104-1491911889:233394..233927 | Clytia hemisphaerica | exon |
| TCONS_00010309-exon-sc0000104-1491911889:232462..232846 | TCONS_00010309-exon-sc0000104-1491911889:232462..232846 | Clytia hemisphaerica | exon |
| TCONS_00010309-exon-sc0000104-1491911889:231028..231901 | TCONS_00010309-exon-sc0000104-1491911889:231028..231901 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:231028..233927 - |
Blast
The following BLAST results are available for this feature:
|
