TCONS_00010301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010301
Unique NameTCONS_00010301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2771

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010301 ID=TCONS_00010301|Name=TCONS_00010301|organism=Clytia hemisphaerica|type=transcript|length=2771bp
CTTGCATATTGTTGTTCTTTTTAGCGTATGTATAGAATGGCGTAATTTGG
GCACTGGCATttgtatataaagAATGAACGTGTTCAGCAAATTTGGAGAA
ACACTCCACTCAGTCGATGCGCATGCGCTATTGAAATCAATCGGTCTTGA
ACAAATGATGTCAGATGCGCCAACAGACCATAAATATCTAGCCTACCTTA
GTGGTGGAATCCTAGCTTCGGCTGCAGTATTATTTGTCGGTAACCGTTTG
TTTCATGATCGTCTTTCCAGTTGGAACCTACCAGGACCGAAAAGTTCACT
CCTGCCGATAGACCTGTTCAAAGGTCACAAAAACCAACACCAACTACACT
TATTGTTAGACGACTATGTGAAAACTTACGGCGAAACTTTCGCTTTTAAT
TACAAAGGACAGCCTGTTGTCGCAACGACAGACGAGGATATCATACATAA
AATATTATGGAAAGAATTCCCAAACTTTGAAAACAGAAAGTTCTTTGTCG
AGATGCCGTGGCCTTGTCAACACATGGTAACCATGGCAAAAGGAGCAAAG
GCCAAAATGATCAGAAACCTTTTGAAAGCTGTATTAGACgccaaaagtat
caaaaataaTTGGGCTCATTTTCAAGAAGCGAACCAGGACGTGGAAGAGC
TCTTGAGGGACGCCGCGTTAAACATGCTAGAAGTTAATTCGACAAGTTTA
GCAAATGGATATATCATGCAGATCATCACCAAGATGGCATTTTCGCTTGA
TTGCTCCAACCAATCAGATCTCAACAAACAATTGGTCCAACTATCACACC
TCTTTACTAGACCTCCAACATGGCTTCAAAGCTGTTCCAGTCTCCCAATC
ATTGGAAACTTGTTGAAACTTTCCCCATGGGGATTTAACTCAAGTTTGCA
TCAGTTCATAAAGATTGCAACAGACATTGTTGTGGAAAGACGCAAAGAAA
AGAATCGCGAACCACAGGATGTATTGGACGTTCTGTTAGCAGCACAATCC
AAAGACTCCAACATCAGCACTGAAATTCTATTAGCTCAGGCTATTGTTCT
CCTCACTGTCGTCCACGCTTCAACCGCCACGACGATCTCCATAGCAACCT
ATTATATCGCCAAACACAAAGATGTACAAAGGAGACTACAACAAGAGATT
GACAGTATCTCAATGGAAGATGGATTTCCATCTTGGGAACATCTACATAA
ACAGTTGCCATACCTTGGACAAGTTGTCAATGAAACTTTACGCCTCTACC
CGTCAGCCTTTATGTTGATGCGTGAATGTACAAAGCCAACAACAGTCAAT
GGCATCTCCTTTGAAAAAGGTGACGGAGTTCTCATCCCAACCTATTCGAT
GCATCGAGATCCTAAAGTTTTCACTGATCCTGAACAATTCAATCCAGACC
GGTTCGAGACCAAACCATCAAGACATTATTATCCGTTCGGTGACGGCTAC
CGTATGTGTCCGGGAAAAGAAATGGCTTTGTCCGAAATTAAAACCTACTT
AGCTTCGAtgttgaaaaactttgatttgTCACTTGTTGACGAGAACCAAG
AATTATGCGTCAAATCATACATTTCAGCTCAAACCACAATGGCGGTGGAT
GAACCAATCCAAATTCGTGTACAAAAAAGACGTCATTAGATGTAATTTAT
AATGTAACCAAGGATGTCCTATATCTACCATCGgttaaattttgcagatt
tttcgaATCCATGGAAACAATTGATGATCTGTTTTCTGGATGTTATATCT
CTGATCAACCTCTACACCAATACTTCATGACAAAGAGTACGAGTTTACTT
GTGTCTAATGACGGATGTTTGAAGTCATTGATGTGTTTTAATAGATACAC
TCTCTTGGACCCCCCTCCCCCTGACCCACTGGaaagtttttccaaatttt
cgtccccggtagaaaaaaataccctaaaatttcaggCCTATTTGCTTTTT
TGACCgctaaaaacaaaagaattttattCCCCATTGGCGGGAGTTCGATA
GagattttatccccactgtgggaagaaTTTCTAACGGGGCTTAGTGACAG
AGGTGTAGATACAGATATTTGACTCCGATAAGTCCGAACACAACCTTCTT
GTGAATTTCGGGTTAACTGGTATATTCGGTTAATGAAAGACTGTATTAta
gtatggcgcgccaaaaggctatttaatactaactttttttataataccaa
cttttttttataatatcaactttttttataatatcaacttttttttttat
aataccaacttttttttttataaaaccaactttttttttatagtaccaac
tttttttttagttcaaagttttttcataaCACCAATTTTTGTCTCGCTTA
CTATGCGTGTATAATCGATCAAGTGTATTaaaatgaaagttggtattata
aaaaaaaagttgatattataaaaaaagttggtattataaaaaaaagctgg
tattataaaaaaaagttagtattaaaaagcctttttggcGCGCCATATTA
TAGCCTCACATTCGTAACAAAAGTTGTGCAGGTATCATAACATATCCACA
TTAAAACGGAGTATGGGAGGTGTTGAAGAACCAAGAACTTTTGTATATGG
TTCATTGCAGAAGAAAAAGTTGGTAATATTTTGTTTGGTTAAATTCAAGA
AGgaataaatttattttaaaaagacaattatTTCTTCATTATGTTAATTG
TAAATAATCATGCATATATATAATCTTTAATATggtgcttattaaaaaaa
cacatGAATCTTAAAATAGCA
Run BLAST on NCBI

transcript from alignment at sc0000104:175374..187785-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010301 ID=TCONS_00010301|Name=TCONS_00010301|organism=Clytia hemisphaerica|type=transcript|length=12412bp|location=Sequence derived from alignment at sc0000104:175374..187785- (Clytia hemisphaerica)
CTTGCATATTGTTGTTCTTTTTAGCGTATGTATAGAATGGCGTAATTTGG
GCACTGGCATTTGTATATAAAGGTCAGTCTTTCCATGATGGCGTAATGAC
GTTATAAAGATATTGGCGTGATATCTGAATCGGGAAAGATTTGATGGGTG
ATGCCTGATTTGGGTTATAATCGATATTCTTGCACAGTAAACAAATTTTT
GTAAATTTTTATGAGGTCAAAATATTTGGGCGCGCTAATTTTCTTCTAAT
TATTACGCTTAGTCATGAAAAGTTAGACTAGGAGCAATATTTTTATATTA
AGGATGGAATCCTTGTCAAAATGAAAGAGTATTGAACATTGAGGAATGGA
GCTGCCAGTACTGCGGGGACGTGTAGAAATACAAGCTCAAGGTTACACAA
AAGATTGGTTAGCAGTTTCGGATAAATCAATAAAGTTCACTTGCACAGTA
AATACATTTTCCTCTAATTATCTTATAAGAACATAAGGCTTCGATGGCCA
AAATGTTGAGAACGAGTTAAGAACATTTTAAAGCTTTGCGAACTCTAAAA
CACCCGATTTCTTAGGAAAACAGACAACAATGCCCACAAAATGGTTAAAA
CTAGAACATATCAAGAACACTTTTAGGCTATTTCATCGTCCTTAAGAATT
ATACTATTATACATTATTGATAACAGCGCCCGCCATCAAGCATGCTTCAA
TTGTCAATAAAACTGATTCTGAAGCCGGAACTTAAAAATCGCTGGAACAG
CCGAGAATCGCCGGAAAACGGGTTCTCTTGAATTTCTAGAGTTTTTTTAT
GAAATTTTGCACACTGATGCAAAATGGCAATACCTAAAATATGACGGCGC
CTGATTTTTAAAAGAAAAAAAATTCCGGCCAAAAATGCCTGAAATATGCC
GGAAAAACCGGTTATTGGCATTTTCTCGAGATTTCATCATTAGTATTTTC
TGATTTTTTGCTCAAAGATGCGTAATAGCAATGTCGGATTTTTGAGAACA
ATTTTTTCGGCCGAAAATGTCGGAAATATGCTGAAAATCACCGTTTTTGC
AGATTTTCACTGGGCTTTTTTCCTAATATTTCTATATTTTTATTTTCACA
CAAACGTTGAACTGGAAGTAAAATCTCCAGCTTAATTTGAAAAGTGAAAA
ACCTGAAAACAAAAAAGTGTTAAGAGACTTGTTAACCCTATTATTATCAG
GCTTTTTCGGATTTTGTATTCTCAAGGGGGGGTGTTTTCCACCAGCCTTG
CATAACTTTTGATCTAGAAAAGATATGGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTATATTAAAAGTCAAAAACTTTCAGAGTGT
TAAAAAAAAATTTCAGTGAGCTATTAGCAAAATAGTGCCAGCCTGGTGGA
AAACACCCCCCCTGATAAAAAGGGTTGGTGTAATTTAAGATGCACGATCT
AACGATTTACGATTCACGATGTGCGATCCATGCATAAAGTATGCTGATTA
TTCCTAATAATTATCATAAAACTTAAATTATATTGTATAATTCTAAAACA
GTGGCATAATCTTTTCTCGCTTTTGTTTACCACGGTAAATTCAAGTAAAT
TTATGCAAAAAAAACGAAATATGTAAGCAATGAAAGTACGAATAATTACG
ACCGTAAAATTATGAAAAAACTTACATAATGTTGATAATAAAAACTACCA
GACTACCTTGTGAACATAAACAATGCACAAGAAATATTTTTGCTCTCAGT
TTTAACAATCATAATCGAATATAGGAATTTCTTTCTTAAAAGCAAAGAAA
AGAATATATTGGCGAACAATATGTTTTGCGGACCGTAATGTACGAAGCAA
AAAACGGGTGCTCTATTATGAGAAAGAATTTTCTTTTGGTAAACAATTCC
CCTATATTGATTCAAGTTTATGAAAAAGAGAGAGAGGAGAGTACAGAAAG
TGAATACACGTGGCTTTCACTTTCTTTTAATCTATGACTGAATTGAAATT
GAAAAGAGAAAGGGATTATGGCATAATCAGGAAAACGCACTGAAAGCTTC
TTTAAATATAATTTGTATAATTTTACATGAATGATGTTTTTAAAAATAAT
TGAGTTTCAGCGAATGAAAGTTTGTAAATTGCCTAAATATTTTATCATGA
TTAGCATAATTACGCATGAATTAACATATTTTATGCATGGATCGCGAATC
GTGCATCGTAAATCGTTAGATCGTGCATCTTAAATTACACCAACCCTGAT
AAAAATAGGGTTAAGTCTCAAGAATTACTAATAACTACTATTTGTCGAAT
TTTGATGACCATTTGTTTATTTTTTTTCAGTCCCCGTACGTTTCTTATTT
TACTTCCTTCTCTATTTTCATTCTATATTTATCATTAGGTAGGTCCAATA
TGCATTGAGCTTGTCTTCCTTCATTGAATTGTCGTTATCTCATTCGAAAT
ATATTCTCAGAAAATAGAGCTCTGTTTAAGTGTTTGTTAATTTGATTCTT
TTTATACGTTTTGTTGATGTTATTTGTGTTGTTCGAGTTTGAAATTTGAT
TCGTAAAAATCGTTCATTTTGGTTCATTTTCAGCGATACATCATATTTGA
TTATGTGTATTTCAAAACTAACTGCAAGTAAACTATTAAGTTCGACTTAT
ATTACTTGATTTCATGTACGTAGTAAAGATAATTCCGAGTTTTATTGTTA
ATTGAAGGGACCATAACGCTTGTTCGAGTAAAGGAGACATTCGATTTTTA
GTGAATAAACTTCTTTACACATCTTCATATAGTCATGCTGTGACGTCATT
AGTGTCCAGGTCTTGCTGCGAATTAATACGCTATCACTTCAATTCATGGT
GTTCTAATTATATAAGTATACTTGCCGGTATCTTAAACATCTGTTAAAAT
AGGCGATTGAAATTTATGTACCTTTTTTATAAGAATCAATAAATTTTGGC
TTAGGCTTATAGCTGATCTTATTTTTTTCGTGATTTTCAGGCGTAAAATT
TTCTTACTTAAAAAAAGAGACATAAGATCTAGCATTTCTATAATCTGGGA
GGCCTGGAATGTTCATAGCTTGGTCTTACGGTATTGTTCTTATTGAAGAA
TTTGATTGATAGAAGGTCGGTCTTTTACTGGGGTATGGTTTTGAAATTTG
CTACGACTTTCCGAGTGAGTGTTTTATTTTGTCGATGATGCCAATCAGCG
TGTATTTAAAAACCTACTAGCTTATTGAAACTAATTTTCGCAGGAACTAA
TATTCATGGTCGAAAAAAAATCGGAAAAATTGCATTTCGCGGGTTTTAAT
TTTCGTGGTTTTGCCCTTTTTTTGGACAAATTTCTTTCATTTTCCTAGGG
ATTTTTCAAATTTTTCGATAAAATTGGAAAAATTGTATTTTGTGGCTTCA
GATTTTGGCGGTTTTACAAAAAAACCGTGAAAAACGCTAAACTTAATTCC
CGCGAAAATTAGTTCTAATAAAGTAATACTTGTTACCACTTCCGAAATCT
CTCTTGAGATATTTAGAGTATAGTATTTGCTTTTTTAAAAGGTTCGGCTT
TTTAAAAGCCAGTTTGACTTCGGTTTAAAGCCATGCTCATATTTTAAAGG
ATTTTCTTGACTGGTCAGCACGATCATTTCATTGTAAAGAAAATTTGAAA
TAATCCAAATTGTTTGAACGATCAAGCTAATTGCATAACAGACCCCCCAG
AGCGACTCAAACGAGCCGAAAAACTTTTTGCTGTCTTATTTTAGTTTTTT
TTGTTTAGACTCTGGCCATATTTCTAAACTTTTAGTATTGCTGAAATTTT
GTGATGTTACGGGAAAGTTGATAAGTTTGCGCGATTGGATTTTGAGGAAA
TCCACTTAAAAGAGACAAGTTTTATTCTGTTTTTGTAATCAACCCAGATA
CATAAAAACGCCTTCGTCATCAGGAGATTGCTATTTGTGTGACAGCTCTT
GTGATGAAATTGCCAGCCATGAGATTTGATGTGAATTTAGTTCGAATGGT
TGAATCAAAGAGACTTCTATTAGTAACTCTTAAAAAGCTAATAAAATTTA
AAGATTCTAAAATTAAATGGAGTTTTGTTGGTATTTTTGGGCTTTTTAAG
ATGAGTATCATGGATCTATTAGATATATTTTGGATTTTTGGAGTAAAGCT
GAGTAACTTAGTAGTTGAATAAAGCTTAGTTTTTTCTTTTTTATCTATAG
AATGAACGTGTTCAGCAAATTTGGAGAAACACTCCACTCAGTCGATGCGC
ATGCGCTATTGAAATCAATCGGTCTTGAACAAATGATGTCAGATGCGCCA
ACAGACCATAAATATCTAGCCTACCTTAGTGGTGGAATCCTAGCTTCGGC
TGCAGTATTATTTGTCGGTAACCGTTTGTTTCATGATCGTCTTTCCAGTT
GGAACCTACCAGGACCGAAAAGTTCACTCCTGCCGATAGACCTGTTCAAA
GGTCACAAAAACCAACACCAACTACACTTATTGTTAGACGACTATGTGAA
AACTTACGGCGAAACTTTCGCTTTTAATTACAAAGGACAGCCTGTTGTCG
CAACGACAGACGAGGATATCATACATAAAATATTATGGAAAGAATTCCCA
AACTTTGAAAACAGAAAGGTTTGTTTCTTTACGTGAAAAATTTACCTATT
CACAACTATTCGACCTCTTTTGAGTAAAGTGCAAATAATTGGATGAAGGC
CAAGAATGGACCATTCAAATGACATCGAGGGCTTCGTTTATGTAAGGTGG
TTGCCCTGTATTTTTAAATATTTGACCCACTTCCTTGGCTTTTAATGAGA
AAAATCCCTTTCACAATTTCCAGCTTAGTGATCTTTTGGTATTGATACGC
AATACGCCTTTTCTACTAAAGATCCCCTAATTTTCTTTACCACATTTACA
AGCTTAGACCATAGTCATTATAAAAAACACCGGTCTGGCAATGTATTGTT
ATAGCTTTTTGTTCAATTTTCTTTTTTTACAAATAAAAGACAAGTTGCGA
TCTGCATACTTTTTGATCACGTTACCAAAGTCTCCTCTTGGGATTGGTCT
ATTTTCTAATCACATGATCAAAAAGTTTGCAAAATAAATCGATTTTGGTA
AGCTCTATCTTTTAACAATAAGAAGAGACAAAAGCCTTCCAGACCAGTAT
TTTTATAATGACTATGCTTAGACGGCCCGACACGTTTTCAATTGGGCCCT
TTAATATGTATTTTGTTCACCTTACAGTTCTTTGTCGAGATGCCGTGGCC
TTGTCAACACATGGTAACCATGGCAAAAGGAGCAAAGGCCAAAATGATCA
GAAACCTTTTGAAAGCTGTATTAGACGCCAAAAGTATCAAAAATAATTGG
GCTCATTTTCAAGAAGCGAACCAGGACGTGGAAGAGCTCTTGAGGGACGC
CGCGTTAAACATGCTAGAAGTTAATTCGACAAGGTAAAGGCTTTTAATGA
GATGTTCATTTCTTGAATACTTTTGGAAGTCTGAGCCCGGGGTCTACCTT
AATGGAAGAAATCTTCGTTGGAATGAACTTTTGCGGAACGAATTTTTGCG
GAAATAAACTTTTGCGGAACGAATTTTCGCGGAATTTAATTTCGCGGTTT
TTTTGACAAATCCGCGAGATAAAATTTCGCGAAACACGAATATTTTTAGG
ATTTAAAGTTTACCTTAAGGTAGTTAGAATGAAGCAAGGCATTTATTTGA
AAAAAAAGGGTATTGAAAAGATGTGTTTCATGTTGGCGACTTCGTCAAAT
TCTCCTAATCTACTTCACTGAACCCAAGGGCATCAAAAATCATTAAAAAA
GTAGAAATTAGCCAGAATTAGACTTGGAAGGGTTCTAGGTTCGTTGATAA
ACAGCCTATAAAATCTACCGCACGAAGAATAGATTCAATCTGTCGTAAAA
ATGCGGCGCGAAAATTTTTTTTATCTAAAAACANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAAAGACTTAATAGTGGGAAGATTTCG
TATATGATCTCCGAGGTTATTCCATTCATTTATGCAAAAAGGAAAGAAAG
AGGCACGATAACGCTCGGTTCTACAAAAAGGTGCCTCGAGTGGTGGTTTT
ATCCTTCGCCCTGCATTGCGTTCTTCCTCTCCTCTCTGGGGAGGAAGAAT
ATTCTTTAAGGCTTTTAAAGGCTTTTAATGAGACGTTCATTTCTTGAATA
CTTTTAGAAGTCTTAGCCCGGGGTCTACCTTAAGGGAAGAAATTTTCGCG
GGAATGAACTTTTGCGGAACGAATTTTTGTGGAAATAAACTTTTGCGGAA
CGAATTTTCGCGGAATTTAATTTCGCGGTTTTTTGACAAATCTGCGAAAT
TAAATTTCGCGAAACACGAATATTTTTAGGATTTAAAGTTTAGCTTAAGG
TAGTTGGTTTGGATTTTTAAAATAGAATGAAGCAAGGCATTTATTTGAAA
AAAGGGTATTGAAAAGATGTGTTTCATGTTGGCGACTTCGTCAAATTCTC
CTAATCTACTTCACTGAACCCAAGGGCATCAAAAATCATTAAAAAAGTAG
AAATTAGCCAGAATTAGACTTTAGTCTGGAAGGGTTCTAGGTTCGTTGAT
AAACAGCCTATAAAATCTACCGCACGAAGAATAGTCAATCTGTCGTAAAA
ATGCGGCGCGAAAATTAAGTTTTTTGTATCTAAAAACAAGCTTAACTTTT
ATCGATTTATCTATCGATGTCTATAGTCATTTCTAAATATGTTTAGTTTA
GCAAATGGATATATCATGCAGATCATCACCAAGATGGCATTTTCGCTTGA
TTGCTCCAACCAATCAGATCTCAACAAACAATTGGTCCAACTATCACACC
TCTTTACTAGACCTCCAACATGGCTTCAAAGCTGTTCCAGTCTCCCAATC
ATTGGAAACTTGTTGAAACTTTCCCCATGGGGATTTAACTCAAGTTTGCA
TCAGTTCATAAAGATTGCAACAGACATTGTTGTGGAAAGACGCAAAGAAA
AGAATCGCGAACCACAGGTAAGCGCCTGAGTAACTAGCATGCTGGCATCC
ACTAACGGATTCTTCTTCCTCATACTAACTGCAGTTTGGTAGAGGTCTGA
GATTTAGATTACTGAGCAACCTCATCCCTAAGCATGGAGTGATTCACCTT
CAAGAAAAACTTTGTCCAAACAAATAACTTTGTGAGAGAATCACTACAGA
TTATGATTTTTCACGAAAAATAGTTTTCTACCGAGTACGAGTAATGACTA
ATAGTCTCTATAAAATTGATTACAATTCAGTTGTTTTTATTGATGATGCA
ACGTTGGCTCGAAAGTATATGTTTAGACAAACGTGTAGTATACTCTTCGC
AATTTCATATTTTGCCTGTTTGTCTGTCAAATAATTTTTTTCTATTTGGA
AAACTACATACTTACAATCTGGCTCTCCCAGTGTCGTTCGAGTGTCATGG
TATACGCCATGGCTTGGCAGCTCGCGTCTGTCTAGTTGCAGTGTCTGTCA
GCGCCGTGATTCCTACTCTTTCGTGGGTAGGACCCATCCCAAATGCATTC
GGAGGGCTATCTATCTATATCTATATATCTATCTATTATACTTACAATCA
ACCTACTTCCAAGACTATTAATATAAATATTTGTCAACAATCAATACTTT
TGCTTCTCTTTCTAGGATGTATTGGACGTTCTGTTAGCAGCACAATCCAA
AGACTCCAACATCAGCACTGAAATTCTATTAGCTCAGGCTATTGTTCTCC
TCACTGTCGTCCACGCTTCAACCGCCACGACGATCTCCATAGCAACCTAT
TATATCGCCAAACACAAAGATGTACAAAGGAGACTACAACAAGAGATTGA
CAGTATCTCAATGGAAGATGGATTTCCATCTTGGGAACATCTACATAAAC
AGTTGCCATACCTTGGACAAGTTGTCAATGAAACTTTACGCCTCTACCCG
TCAGGTAAATATTCTATGTTTCTTTCATAGACGAGACAATATTAATTTAA
CTTTTTTTTGTTTTACGGGACGAGATGGAGTTTTTACTAGCTCCTATTTG
ATTTGAAATTAATAAGTTAATAAGTACAAACAATTACTAGACATAGGAAG
GCGGAATTCAAGGATAAATCAGGGAAGTCAGCGCTTATACTTACGTGTTT
GAAATACAGGTGACGCTCTCTTATTCGGTTTCAAGGGTTTGGATTTTTAT
CGAATAAAGGGAGCTTATTGAATGGGAGAACGTCGTTTATGAAACTTTGT
TGTTGGCAGTGACTTTCAATATAATCAAACAATGGAGCGTATCTACAGAA
GAACCTTAGAATTAGGGGACAAGCTGGAGTTTTTTACAAGCTCTTATTTG
ATTTGGTTGGTCGTTAACCAGTAATAAAACAATTCTGTTACTTTTTTCTA
AAGAACGCGTCATCTCTATCACTTCAAATGACCAATTAGTGAAGTATCTT
GTAAAAACTCAACTCATCACAGAATTAGAGAGCGTAACGACCTCGTACAA
GTTCGAATTAGAGATAGCCAACTGTACTTTCTTTTATTCAGCCTTTATGT
TGATGCGTGAATGTACAAAGCCAACAACAGTCAATGGCATCTCCTTTGAA
AAAGGTGACGGAGTTCTCATCCCAACCTATTCGATGCATCGAGATCCTAA
AGTTTTCACTGATCCTGAACAATTCAATCCAGACCGGTTCGAGTAAGTCC
ATCAAAGCTCATTTTGAACTTGAAAAACCCAGTGGAATACCAAAGTGTTG
TCAGCCAATATTTCACTGTACCCTAAGCTCCCAAATAAATGTCTCCCCCG
CTTATTAAGTCGAAAAGTTTTTGCCTATCTATCTAAGGTGAAGTCGTCCT
TCAGGTTTTTTTATAAAATATCCCATCATGGACCATCACTTCAGGATTGC
TCCCAAAGGGATAGAGAATGGTGTGATATTTCGGGAAATTTGCGATCGTT
ATCCTAATGCTGCTTGTGGATGTGTGAATATGGAAAGATGGAAAGATGGG
TACCCTCCCTAGGAAGTGACATTCGGAGAAGGGATAAAATTAAAAAGGTT
TTTTGAAATTTAGGTGCAAATACGGAAAATAATTGAAACTTGAAAGGAAT
ATATGAATCATAATTTTGTCCTTATATTTTATGCAGTTTTCCTTTTCCCT
GTGAGAAAATTTTCTTGCGCCTATTGTGAAAAATCACATCATCCAGTATC
CAACCAGGATTACTCTGGGTGGGATAATGTTGGTGGGATATTTCTGGACA
TTTGCGGTCGTATCCTAAAACAGCTATGTAATTTATAAAATATCAGTGGA
TGAAATTGATAGACCCCTCAAAGTGTTCGAAATTATGTACAGTTCCAGAA
TTGTTGAGGTTTCAGAGTTTGTTGAATATAATATGTTTCAAAGTTATATC
AATGAGGATGTTTTGTAAGTGAAGTATTTTGTGGAGTATGTAAAATTGTT
TATTTTGATCAGCTTTTGGAAAAAATCCCAAGGCCAAGAGAGTTAAAGGT
GAGAATATGTAGAGTCTGTGTGAAAAATTGAAAATTAAAATAAGAAAAGA
ACTTTCTATGCTCTGGAGGTGGAGTATGCACAATATTTGCATATTTATTT
GGTAGACTTGAGCGCCCCAAGACTGTGCAATTGAATAGAGCTGTGGGAGA
AAAATTCTGGTAGAATGTCTTTGGGGTGATAATAGACTAGAATTGCAGAT
TTTATGCAATGAAGACTGCTGTAGCAGAAGATCTTAATGTTAAAATGTGA
AATTAAAATGAACAACAGATGAGATGGAGACACCCCCACCAAGGGGGTGC
CTGGAGACAGGTGCGGATCCTGGAGTAAGCTCTCCTTGCCACTCTAGAGT
CACCCACCACTCCAACGCCCCCTTTCCTATTAGAACCACTAGTTTAGCTA
ACACAAGCTGAATTGCTTTTAGGCTGCGCGCATCTCCGGTTTTGATTTTG
ATATAGTGGATGCTGCGTATCATGTATAAAATTTCCGTCCGAGATTTACC
CTAATATTTACCCTGTTTCAATTTCATTTAAAAAGTTATAAAAATTAGTG
ATTGTATTAACATCTAATCATTCAAATTTTTAATTGAAATTTGATGAAAT
TTAAAGATCTATCATATTACATATTACTTTATCAAGCTAATCAATTTTCA
AAAATTCAAAAACAGAAAGACGGACGGGAATTTTATACACGATATGCTGC
TCCGAGATCTAATAATTTCCAAAGGATCAAACTATTTCTATAATAAAGAG
GAAAGATAAACATTTATCAAATTTGGCCAAATTTGACGTAGATTTAAAAA
ATCAAATGCAAAAACAAAGGTTTTTGTCGTATTAAAAGTTAAGGCCCTTT
GGAGAACTACCGGTATCTCGACCACGCTACTATAAGTATACTATCGTAGT
CGGCAGAGAACGTGTTCAAGATTCCCCATCTTTTGTAGAGTAAAAACTAT
TTTTACACTTAGTTGTAAATGTAGTTTCAAAATAATTAACTATTTTAGGA
CCAAACCATCAAGACATTATTATCCGTTCGGTGACGGCTACCGTATGTGT
CCGGGAAAAGAAATGGCTTTGTCCGAAATTAAAACCTACTTAGCTTCGAT
GTTGAAAAACTTTGATTTGTCACTTGTTGACGAGAACCAAGAATTATGCG
TCAAATCATACATTTCAGCTCAAACCACAATGGCGGTGGATGAACCAATC
CAAATTCGTGTACAAAAAAGACGTCATTAGATGTAATTTATAATGTAACC
AAGGATGTCCTATATCTACCATCGGTTAAATTTTGCAGATTTTTCGAATC
CATGGAAACAATTGATGATCTGTTTTCTGGATGTTATATCTCTGATCAAC
CTCTACACCAATACTTCATGACAAAGAGTACGAGTTTACTTGTGTCTAAT
GACGGATGTTTGAAGTCATTGATGTGTTTTAATAGATACACTCTCTTGGA
CCCCCCTCCCCCTGACCCACTGGAAAGTTTTTCCAAATTTTCGTCCCCGG
TAGAAAAAAATACCCTAAAATTTCAGGCCTATTTGCTTTTTTGACCGCTA
AAAACAAAAGAATTTTATTCCCCATTGGCGGGAGTTCGATAGAGATTTTA
TCCCCACTGTGGGAAGAATTTCTAACGGGGCTTAGTGACAGAGGTGTAGA
TACAGATATTTGACTCCGATAAGTCCGAACACAACCTTCTTGTGAATTTC
GGGTTAACTGGTATATTCGGTTAATGAAAGACTGTATTATAGTATGGCGC
GCCAAAAGGCTATTTAATACTAACTTTTTTTATAATACCAACTTTTTTTT
ATAATATCAACTTTTTTTATAATATCAACTTTTTTTTTTATAATACCAAC
TTTTTTTTTTATAAAACCAACTTTTTTTTTATAGTACCAACTTTTTTTTT
AGTTCAAAGTTTTTTCATAACACCAATTTTTGTCTCGCTTACTATGCGTG
TATAATCGATCAAGTGTATTAAAATGAAAGTTGGTATTATAAAAAAAAAG
TTGATATTATAAAAAAAGTTGGTATTATAAAAAAAAGCTGGTATTATAAA
AAAAAGTTAGTATTAAAAAGCCTTTTTGGCGCGCCATATTATAGCCTCAC
ATTCGTAACAAAAGTTGTGCAGGTATCATAACATATCCACATTAAAACGG
AGTATGGGAGGTGTTGAAGAACCAAGAACTTTTGTATATGGTTCATTGCA
GAAGAAAAAGTTGGTAATATTTTGTTTGGTTAAATTCAAGAAGGAATAAA
TTTATTTTAAAAAGACAATTATTTCTTCATTATGTTAATTGTAAATAATC
ATGCATATATATAATCTTTAATATGGTGCTTATTAAAAAAACACATGAAT
CTTAAAATAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005784XLOC_005784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010301-exon-sc0000104-1575043694:187714..187785TCONS_00010301-exon-sc0000104-1575043694:187714..187785Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1575043694:182618..183035TCONS_00010301-exon-sc0000104-1575043694:182618..183035Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1575043694:181803..182008TCONS_00010301-exon-sc0000104-1575043694:181803..182008Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1575043694:180219..180489TCONS_00010301-exon-sc0000104-1575043694:180219..180489Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1575043694:179282..179570TCONS_00010301-exon-sc0000104-1575043694:179282..179570Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1575043694:178544..178694TCONS_00010301-exon-sc0000104-1575043694:178544..178694Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1575043694:175374..176737TCONS_00010301-exon-sc0000104-1575043694:175374..176737Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1510915933:187714..187785TCONS_00010301-exon-sc0000104-1510915933:187714..187785Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1510915933:182618..183035TCONS_00010301-exon-sc0000104-1510915933:182618..183035Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1510915933:181803..182008TCONS_00010301-exon-sc0000104-1510915933:181803..182008Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1510915933:180219..180489TCONS_00010301-exon-sc0000104-1510915933:180219..180489Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1510915933:179282..179570TCONS_00010301-exon-sc0000104-1510915933:179282..179570Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1510915933:178544..178694TCONS_00010301-exon-sc0000104-1510915933:178544..178694Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1510915933:175374..176737TCONS_00010301-exon-sc0000104-1510915933:175374..176737Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1491911889:187714..187785TCONS_00010301-exon-sc0000104-1491911889:187714..187785Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1491911889:182618..183035TCONS_00010301-exon-sc0000104-1491911889:182618..183035Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1491911889:181803..182008TCONS_00010301-exon-sc0000104-1491911889:181803..182008Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1491911889:180219..180489TCONS_00010301-exon-sc0000104-1491911889:180219..180489Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1491911889:179282..179570TCONS_00010301-exon-sc0000104-1491911889:179282..179570Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1491911889:178544..178694TCONS_00010301-exon-sc0000104-1491911889:178544..178694Clytia hemisphaericaexon
TCONS_00010301-exon-sc0000104-1491911889:175374..176737TCONS_00010301-exon-sc0000104-1491911889:175374..176737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:175374..187785 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.874927	5.24722e-08	1.21747	0	0.531971	0.140683	0.000115809	4.61947e-08	0	0	0	0.0715802	6.73338	8.84665	2.87476	3.43923	5.13234	1.82568	16.5824	5.58914	9.05046	3.96054	1.89198	2.93703	6.85523e-06	5.2318e-06	4.48983	7.01138	0.84933	3.08046
Blast
[Close]
BLAST of TCONS_00010301 vs. Swiss-Prot (Human)
Match: CP3A4 (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 168.318 bits (425), Expect = 5.075e-44
Identity = 137/477 (28.72%), Postives = 239/477 (50.10%), Query Frame = 2 
Query:  254 HDRLSSWNLPGPKSSLLPIDLFKGHKNQHQLHLLLD-DYVKTYGETFAFNYKGQPVVATTDEDIIHKILWKE-FPNFENRKFFVEMPWPCQHMVTMAKGAKAKMIRNLLKAVLDAKSIKNNWAHFQEANQDVEELLRDAALNMLEVNSTSLANGYIMQIITKMAFSLDCSNQSDLNKQLVQLSHLFTR----PPTWLQSCSSLPIIGNLLK-LSPWGFNSSLHQFIKIATDIVVERRKEKNREPQ-DVLDVLLAAQ-SKDSN----ISTEILLAQAIVLLTVVHXXXXXXXXXXXXXXXKHKDVQRRLQQEIDSISMEDGFPSWEHLHKQLPYLGQVVNETLRLYPSAFMLMRECTKPTTVNGISFEKGDGVLIPTYSMHRDPKVFTDPEQFNPDRFETKPSRH-----YYPFGDGYRMCPGKEMALSEIKTYLASMLKNFDLSLVDENQELCVKSYISAQTTMAVDEPIQIRVQKR 1630
            H       +PGP     P+       + H+   + D +  K YG+ + F    QPV+A TD D+I  +L KE +  F NR+ F  + +  +  +++A+  + K +R+LL     +  +K       +    +   LR  A     V    +   Y M +IT  +F ++  + ++     V+ +    R     P +L S +  P +  +L+ L+   F   +  F++ +   + E R E  ++ + D L +++ +Q SK++     +S   L+AQ+I+ +   + +T++ +S   Y +A H DVQ++LQ+EID++      P+++ +  Q+ YL  VVNETLRL+P A  L R C K   +NG+   KG  V+IP+Y++HRDPK +T+PE+F P+RF  K   +     Y PFG G R C G   AL  +K  L  +L+NF      E Q   +   +S    +  ++P+ ++V+ R
Sbjct:   30 HGLFKKLGIPGPT----PLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGF-MKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFL-SITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVL-QMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQ---IPLKLSLGGLLQPEKPVVLKVESR 496
The following BLAST results are available for this feature:
BLAST of TCONS_00010301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP3A45.075e-4428.72Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
back to top