TCONS_00010300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010300
Unique NameTCONS_00010300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010300 ID=TCONS_00010300|Name=TCONS_00010300|organism=Clytia hemisphaerica|type=transcript|length=2733bp
GCCTGATTTGGGTTATAATCGATATTCTTGCACAAATGAACGTGTTCAGC
AAATTTGGAGAAACACTCCACTCAGTCGATGCGCATGCGCTATTGAAATC
AATCGGTCTTGAACAAATGATGTCAGATGCGCCAACAGACCATAAATATC
TAGCCTACCTTAGTGGTGGAATCCTAGCTTCGGCTGCAGTATTATTTGTC
GGTAACCGTTTGTTTCATGATCGTCTTTCCAGTTGGAACCTACCAGGACC
GAAAAGTTCACTCCTGCCGATAGACCTGTTCAAAGGTCACAAAAACCAAC
ACCAACTACACTTATTGTTAGACGACTATGTGAAAACTTACGGCGAAACT
TTCGCTTTTAATTACAAAGGACAGCCTGTTGTCGCAACGACAGACGAGGA
TATCATACATAAAATATTATGGAAAGAATTCCCAAACTTTGAAAACAGAA
AGTTCTTTGTCGAGATGCCGTGGCCTTGTCAACACATGGTAACCATGGCA
AAAGGAGCAAAGGCCAAAATGATCAGAAACCTTTTGAAAGCTGTATTAGA
CgccaaaagtatcaaaaataaTTGGGCTCATTTTCAAGAAGCGAACCAGG
ACGTGGAAGAGCTCTTGAGGGACGCCGCGTTAAACATGCTAGAAGTTAAT
TCGACAAGTTTAGCAAATGGATATATCATGCAGATCATCACCAAGATGGC
ATTTTCGCTTGATTGCTCCAACCAATCAGATCTCAACAAACAATTGGTCC
AACTATCACACCTCTTTACTAGACCTCCAACATGGCTTCAAAGCTGTTCC
AGTCTCCCAATCATTGGAAACTTGTTGAAACTTTCCCCATGGGGATTTAA
CTCAAGTTTGCATCAGTTCATAAAGATTGCAACAGACATTGTTGTGGAAA
GACGCAAAGAAAAGAATCGCGAACCACAGGATGTATTGGACGTTCTGTTA
GCAGCACAATCCAAAGACTCCAACATCAGCACTGAAATTCTATTAGCTCA
GGCTATTGTTCTCCTCACTGTCGTCCACGCTTCAACCGCCACGACGATCT
CCATAGCAACCTATTATATCGCCAAACACAAAGATGTACAAAGGAGACTA
CAACAAGAGATTGACAGTATCTCAATGGAAGATGGATTTCCATCTTGGGA
ACATCTACATAAACAGTTGCCATACCTTGGACAAGTTGTCAATGAAACTT
TACGCCTCTACCCGTCAGCCTTTATGTTGATGCGTGAATGTACAAAGCCA
ACAACAGTCAATGGCATCTCCTTTGAAAAAGGTGACGGAGTTCTCATCCC
AACCTATTCGATGCATCGAGATCCTAAAGTTTTCACTGATCCTGAACAAT
TCAATCCAGACCGGTTCGAGACCAAACCATCAAGACATTATTATCCGTTC
GGTGACGGCTACCGTATGTGTCCGGGAAAAGAAATGGCTTTGTCCGAAAT
TAAAACCTACTTAGCTTCGAtgttgaaaaactttgatttgTCACTTGTTG
ACGAGAACCAAGAATTATGCGTCAAATCATACATTTCAGCTCAAACCACA
ATGGCGGTGGATGAACCAATCCAAATTCGTGTACAAAAAAGACGTCATTA
GATGTAATTTATAATGTAACCAAGGATGTCCTATATCTACCATCGgttaa
attttgcagatttttcgaATCCATGGAAACAATTGATGATCTGTTTTCTG
GATGTTATATCTCTGATCAACCTCTACACCAATACTTCATGACAAAGAGT
ACGAGTTTACTTGTGTCTAATGACGGATGTTTGAAGTCATTGATGTGTTT
TAATAGATACACTCTCTTGGACCCCCCTCCCCCTGACCCACTGGaaagtt
tttccaaattttcgtccccggtagaaaaaaataccctaaaatttcaggCC
TATTTGCTTTTTTGACCgctaaaaacaaaagaattttattCCCCATTGGC
GGGAGTTCGATAGagattttatccccactgtgggaagaaTTTCTAACGGG
GCTTAGTGACAGAGGTGTAGATACAGATATTTGACTCCGATAAGTCCGAA
CACAACCTTCTTGTGAATTTCGGGTTAACTGGTATATTCGGTTAATGAAA
GACTGTATTAtagtatggcgcgccaaaaggctatttaatactaacttttt
ttataataccaacttttttttataatatcaactttttttataatatcaac
ttttttttttataataccaacttttttttttataaaaccaactttttttt
tatagtaccaactttttttttagttcaaagttttttcataaCACCAATTT
TTGTCTCGCTTACTATGCGTGTATAATCGATCAAGTGTATTaaaatgaaa
gttggtattataaaaaaaaagttgatattataaaaaaagttggtattata
aaaaaaagctggtattataaaaaaaagttagtattaaaaagcctttttgg
cGCGCCATATTATAGCCTCACATTCGTAACAAAAGTTGTGCAGGTATCAT
AACATATCCACATTAAAACGGAGTATGGGAGGTGTTGAAGAACCAAGAAC
TTTTGTATATGGTTCATTGCAGAAGAAAAAGTTGGTAATATTTTGTTTGG
TTAAATTCAAGAAGgaataaatttattttaaaaagacaattatTTCTTCA
TTATGTTAATTGTAAATAATCATGCATATATATAATCTTTAATATggtgc
ttattaaaaaaacacatGAATCTTAAAATAGCA
Run BLAST on NCBI

transcript from alignment at sc0000104:175374..187633-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010300 ID=TCONS_00010300|Name=TCONS_00010300|organism=Clytia hemisphaerica|type=transcript|length=12260bp|location=Sequence derived from alignment at sc0000104:175374..187633- (Clytia hemisphaerica)
GCCTGATTTGGGTTATAATCGATATTCTTGCACAGTAAACAAATTTTTGT
AAATTTTTATGAGGTCAAAATATTTGGGCGCGCTAATTTTCTTCTAATTA
TTACGCTTAGTCATGAAAAGTTAGACTAGGAGCAATATTTTTATATTAAG
GATGGAATCCTTGTCAAAATGAAAGAGTATTGAACATTGAGGAATGGAGC
TGCCAGTACTGCGGGGACGTGTAGAAATACAAGCTCAAGGTTACACAAAA
GATTGGTTAGCAGTTTCGGATAAATCAATAAAGTTCACTTGCACAGTAAA
TACATTTTCCTCTAATTATCTTATAAGAACATAAGGCTTCGATGGCCAAA
ATGTTGAGAACGAGTTAAGAACATTTTAAAGCTTTGCGAACTCTAAAACA
CCCGATTTCTTAGGAAAACAGACAACAATGCCCACAAAATGGTTAAAACT
AGAACATATCAAGAACACTTTTAGGCTATTTCATCGTCCTTAAGAATTAT
ACTATTATACATTATTGATAACAGCGCCCGCCATCAAGCATGCTTCAATT
GTCAATAAAACTGATTCTGAAGCCGGAACTTAAAAATCGCTGGAACAGCC
GAGAATCGCCGGAAAACGGGTTCTCTTGAATTTCTAGAGTTTTTTTATGA
AATTTTGCACACTGATGCAAAATGGCAATACCTAAAATATGACGGCGCCT
GATTTTTAAAAGAAAAAAAATTCCGGCCAAAAATGCCTGAAATATGCCGG
AAAAACCGGTTATTGGCATTTTCTCGAGATTTCATCATTAGTATTTTCTG
ATTTTTTGCTCAAAGATGCGTAATAGCAATGTCGGATTTTTGAGAACAAT
TTTTTCGGCCGAAAATGTCGGAAATATGCTGAAAATCACCGTTTTTGCAG
ATTTTCACTGGGCTTTTTTCCTAATATTTCTATATTTTTATTTTCACACA
AACGTTGAACTGGAAGTAAAATCTCCAGCTTAATTTGAAAAGTGAAAAAC
CTGAAAACAAAAAAGTGTTAAGAGACTTGTTAACCCTATTATTATCAGGC
TTTTTCGGATTTTGTATTCTCAAGGGGGGGTGTTTTCCACCAGCCTTGCA
TAACTTTTGATCTAGAAAAGATATGGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTATATTAAAAGTCAAAAACTTTCAGAGTGTTA
AAAAAAAATTTCAGTGAGCTATTAGCAAAATAGTGCCAGCCTGGTGGAAA
ACACCCCCCCTGATAAAAAGGGTTGGTGTAATTTAAGATGCACGATCTAA
CGATTTACGATTCACGATGTGCGATCCATGCATAAAGTATGCTGATTATT
CCTAATAATTATCATAAAACTTAAATTATATTGTATAATTCTAAAACAGT
GGCATAATCTTTTCTCGCTTTTGTTTACCACGGTAAATTCAAGTAAATTT
ATGCAAAAAAAACGAAATATGTAAGCAATGAAAGTACGAATAATTACGAC
CGTAAAATTATGAAAAAACTTACATAATGTTGATAATAAAAACTACCAGA
CTACCTTGTGAACATAAACAATGCACAAGAAATATTTTTGCTCTCAGTTT
TAACAATCATAATCGAATATAGGAATTTCTTTCTTAAAAGCAAAGAAAAG
AATATATTGGCGAACAATATGTTTTGCGGACCGTAATGTACGAAGCAAAA
AACGGGTGCTCTATTATGAGAAAGAATTTTCTTTTGGTAAACAATTCCCC
TATATTGATTCAAGTTTATGAAAAAGAGAGAGAGGAGAGTACAGAAAGTG
AATACACGTGGCTTTCACTTTCTTTTAATCTATGACTGAATTGAAATTGA
AAAGAGAAAGGGATTATGGCATAATCAGGAAAACGCACTGAAAGCTTCTT
TAAATATAATTTGTATAATTTTACATGAATGATGTTTTTAAAAATAATTG
AGTTTCAGCGAATGAAAGTTTGTAAATTGCCTAAATATTTTATCATGATT
AGCATAATTACGCATGAATTAACATATTTTATGCATGGATCGCGAATCGT
GCATCGTAAATCGTTAGATCGTGCATCTTAAATTACACCAACCCTGATAA
AAATAGGGTTAAGTCTCAAGAATTACTAATAACTACTATTTGTCGAATTT
TGATGACCATTTGTTTATTTTTTTTCAGTCCCCGTACGTTTCTTATTTTA
CTTCCTTCTCTATTTTCATTCTATATTTATCATTAGGTAGGTCCAATATG
CATTGAGCTTGTCTTCCTTCATTGAATTGTCGTTATCTCATTCGAAATAT
ATTCTCAGAAAATAGAGCTCTGTTTAAGTGTTTGTTAATTTGATTCTTTT
TATACGTTTTGTTGATGTTATTTGTGTTGTTCGAGTTTGAAATTTGATTC
GTAAAAATCGTTCATTTTGGTTCATTTTCAGCGATACATCATATTTGATT
ATGTGTATTTCAAAACTAACTGCAAGTAAACTATTAAGTTCGACTTATAT
TACTTGATTTCATGTACGTAGTAAAGATAATTCCGAGTTTTATTGTTAAT
TGAAGGGACCATAACGCTTGTTCGAGTAAAGGAGACATTCGATTTTTAGT
GAATAAACTTCTTTACACATCTTCATATAGTCATGCTGTGACGTCATTAG
TGTCCAGGTCTTGCTGCGAATTAATACGCTATCACTTCAATTCATGGTGT
TCTAATTATATAAGTATACTTGCCGGTATCTTAAACATCTGTTAAAATAG
GCGATTGAAATTTATGTACCTTTTTTATAAGAATCAATAAATTTTGGCTT
AGGCTTATAGCTGATCTTATTTTTTTCGTGATTTTCAGGCGTAAAATTTT
CTTACTTAAAAAAAGAGACATAAGATCTAGCATTTCTATAATCTGGGAGG
CCTGGAATGTTCATAGCTTGGTCTTACGGTATTGTTCTTATTGAAGAATT
TGATTGATAGAAGGTCGGTCTTTTACTGGGGTATGGTTTTGAAATTTGCT
ACGACTTTCCGAGTGAGTGTTTTATTTTGTCGATGATGCCAATCAGCGTG
TATTTAAAAACCTACTAGCTTATTGAAACTAATTTTCGCAGGAACTAATA
TTCATGGTCGAAAAAAAATCGGAAAAATTGCATTTCGCGGGTTTTAATTT
TCGTGGTTTTGCCCTTTTTTTGGACAAATTTCTTTCATTTTCCTAGGGAT
TTTTCAAATTTTTCGATAAAATTGGAAAAATTGTATTTTGTGGCTTCAGA
TTTTGGCGGTTTTACAAAAAAACCGTGAAAAACGCTAAACTTAATTCCCG
CGAAAATTAGTTCTAATAAAGTAATACTTGTTACCACTTCCGAAATCTCT
CTTGAGATATTTAGAGTATAGTATTTGCTTTTTTAAAAGGTTCGGCTTTT
TAAAAGCCAGTTTGACTTCGGTTTAAAGCCATGCTCATATTTTAAAGGAT
TTTCTTGACTGGTCAGCACGATCATTTCATTGTAAAGAAAATTTGAAATA
ATCCAAATTGTTTGAACGATCAAGCTAATTGCATAACAGACCCCCCAGAG
CGACTCAAACGAGCCGAAAAACTTTTTGCTGTCTTATTTTAGTTTTTTTT
GTTTAGACTCTGGCCATATTTCTAAACTTTTAGTATTGCTGAAATTTTGT
GATGTTACGGGAAAGTTGATAAGTTTGCGCGATTGGATTTTGAGGAAATC
CACTTAAAAGAGACAAGTTTTATTCTGTTTTTGTAATCAACCCAGATACA
TAAAAACGCCTTCGTCATCAGGAGATTGCTATTTGTGTGACAGCTCTTGT
GATGAAATTGCCAGCCATGAGATTTGATGTGAATTTAGTTCGAATGGTTG
AATCAAAGAGACTTCTATTAGTAACTCTTAAAAAGCTAATAAAATTTAAA
GATTCTAAAATTAAATGGAGTTTTGTTGGTATTTTTGGGCTTTTTAAGAT
GAGTATCATGGATCTATTAGATATATTTTGGATTTTTGGAGTAAAGCTGA
GTAACTTAGTAGTTGAATAAAGCTTAGTTTTTTCTTTTTTATCTATAGAA
TGAACGTGTTCAGCAAATTTGGAGAAACACTCCACTCAGTCGATGCGCAT
GCGCTATTGAAATCAATCGGTCTTGAACAAATGATGTCAGATGCGCCAAC
AGACCATAAATATCTAGCCTACCTTAGTGGTGGAATCCTAGCTTCGGCTG
CAGTATTATTTGTCGGTAACCGTTTGTTTCATGATCGTCTTTCCAGTTGG
AACCTACCAGGACCGAAAAGTTCACTCCTGCCGATAGACCTGTTCAAAGG
TCACAAAAACCAACACCAACTACACTTATTGTTAGACGACTATGTGAAAA
CTTACGGCGAAACTTTCGCTTTTAATTACAAAGGACAGCCTGTTGTCGCA
ACGACAGACGAGGATATCATACATAAAATATTATGGAAAGAATTCCCAAA
CTTTGAAAACAGAAAGGTTTGTTTCTTTACGTGAAAAATTTACCTATTCA
CAACTATTCGACCTCTTTTGAGTAAAGTGCAAATAATTGGATGAAGGCCA
AGAATGGACCATTCAAATGACATCGAGGGCTTCGTTTATGTAAGGTGGTT
GCCCTGTATTTTTAAATATTTGACCCACTTCCTTGGCTTTTAATGAGAAA
AATCCCTTTCACAATTTCCAGCTTAGTGATCTTTTGGTATTGATACGCAA
TACGCCTTTTCTACTAAAGATCCCCTAATTTTCTTTACCACATTTACAAG
CTTAGACCATAGTCATTATAAAAAACACCGGTCTGGCAATGTATTGTTAT
AGCTTTTTGTTCAATTTTCTTTTTTTACAAATAAAAGACAAGTTGCGATC
TGCATACTTTTTGATCACGTTACCAAAGTCTCCTCTTGGGATTGGTCTAT
TTTCTAATCACATGATCAAAAAGTTTGCAAAATAAATCGATTTTGGTAAG
CTCTATCTTTTAACAATAAGAAGAGACAAAAGCCTTCCAGACCAGTATTT
TTATAATGACTATGCTTAGACGGCCCGACACGTTTTCAATTGGGCCCTTT
AATATGTATTTTGTTCACCTTACAGTTCTTTGTCGAGATGCCGTGGCCTT
GTCAACACATGGTAACCATGGCAAAAGGAGCAAAGGCCAAAATGATCAGA
AACCTTTTGAAAGCTGTATTAGACGCCAAAAGTATCAAAAATAATTGGGC
TCATTTTCAAGAAGCGAACCAGGACGTGGAAGAGCTCTTGAGGGACGCCG
CGTTAAACATGCTAGAAGTTAATTCGACAAGGTAAAGGCTTTTAATGAGA
TGTTCATTTCTTGAATACTTTTGGAAGTCTGAGCCCGGGGTCTACCTTAA
TGGAAGAAATCTTCGTTGGAATGAACTTTTGCGGAACGAATTTTTGCGGA
AATAAACTTTTGCGGAACGAATTTTCGCGGAATTTAATTTCGCGGTTTTT
TTGACAAATCCGCGAGATAAAATTTCGCGAAACACGAATATTTTTAGGAT
TTAAAGTTTACCTTAAGGTAGTTAGAATGAAGCAAGGCATTTATTTGAAA
AAAAAGGGTATTGAAAAGATGTGTTTCATGTTGGCGACTTCGTCAAATTC
TCCTAATCTACTTCACTGAACCCAAGGGCATCAAAAATCATTAAAAAAGT
AGAAATTAGCCAGAATTAGACTTGGAAGGGTTCTAGGTTCGTTGATAAAC
AGCCTATAAAATCTACCGCACGAAGAATAGATTCAATCTGTCGTAAAAAT
GCGGCGCGAAAATTTTTTTTATCTAAAAACANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAAAGACTTAATAGTGGGAAGATTTCGTA
TATGATCTCCGAGGTTATTCCATTCATTTATGCAAAAAGGAAAGAAAGAG
GCACGATAACGCTCGGTTCTACAAAAAGGTGCCTCGAGTGGTGGTTTTAT
CCTTCGCCCTGCATTGCGTTCTTCCTCTCCTCTCTGGGGAGGAAGAATAT
TCTTTAAGGCTTTTAAAGGCTTTTAATGAGACGTTCATTTCTTGAATACT
TTTAGAAGTCTTAGCCCGGGGTCTACCTTAAGGGAAGAAATTTTCGCGGG
AATGAACTTTTGCGGAACGAATTTTTGTGGAAATAAACTTTTGCGGAACG
AATTTTCGCGGAATTTAATTTCGCGGTTTTTTGACAAATCTGCGAAATTA
AATTTCGCGAAACACGAATATTTTTAGGATTTAAAGTTTAGCTTAAGGTA
GTTGGTTTGGATTTTTAAAATAGAATGAAGCAAGGCATTTATTTGAAAAA
AGGGTATTGAAAAGATGTGTTTCATGTTGGCGACTTCGTCAAATTCTCCT
AATCTACTTCACTGAACCCAAGGGCATCAAAAATCATTAAAAAAGTAGAA
ATTAGCCAGAATTAGACTTTAGTCTGGAAGGGTTCTAGGTTCGTTGATAA
ACAGCCTATAAAATCTACCGCACGAAGAATAGTCAATCTGTCGTAAAAAT
GCGGCGCGAAAATTAAGTTTTTTGTATCTAAAAACAAGCTTAACTTTTAT
CGATTTATCTATCGATGTCTATAGTCATTTCTAAATATGTTTAGTTTAGC
AAATGGATATATCATGCAGATCATCACCAAGATGGCATTTTCGCTTGATT
GCTCCAACCAATCAGATCTCAACAAACAATTGGTCCAACTATCACACCTC
TTTACTAGACCTCCAACATGGCTTCAAAGCTGTTCCAGTCTCCCAATCAT
TGGAAACTTGTTGAAACTTTCCCCATGGGGATTTAACTCAAGTTTGCATC
AGTTCATAAAGATTGCAACAGACATTGTTGTGGAAAGACGCAAAGAAAAG
AATCGCGAACCACAGGTAAGCGCCTGAGTAACTAGCATGCTGGCATCCAC
TAACGGATTCTTCTTCCTCATACTAACTGCAGTTTGGTAGAGGTCTGAGA
TTTAGATTACTGAGCAACCTCATCCCTAAGCATGGAGTGATTCACCTTCA
AGAAAAACTTTGTCCAAACAAATAACTTTGTGAGAGAATCACTACAGATT
ATGATTTTTCACGAAAAATAGTTTTCTACCGAGTACGAGTAATGACTAAT
AGTCTCTATAAAATTGATTACAATTCAGTTGTTTTTATTGATGATGCAAC
GTTGGCTCGAAAGTATATGTTTAGACAAACGTGTAGTATACTCTTCGCAA
TTTCATATTTTGCCTGTTTGTCTGTCAAATAATTTTTTTCTATTTGGAAA
ACTACATACTTACAATCTGGCTCTCCCAGTGTCGTTCGAGTGTCATGGTA
TACGCCATGGCTTGGCAGCTCGCGTCTGTCTAGTTGCAGTGTCTGTCAGC
GCCGTGATTCCTACTCTTTCGTGGGTAGGACCCATCCCAAATGCATTCGG
AGGGCTATCTATCTATATCTATATATCTATCTATTATACTTACAATCAAC
CTACTTCCAAGACTATTAATATAAATATTTGTCAACAATCAATACTTTTG
CTTCTCTTTCTAGGATGTATTGGACGTTCTGTTAGCAGCACAATCCAAAG
ACTCCAACATCAGCACTGAAATTCTATTAGCTCAGGCTATTGTTCTCCTC
ACTGTCGTCCACGCTTCAACCGCCACGACGATCTCCATAGCAACCTATTA
TATCGCCAAACACAAAGATGTACAAAGGAGACTACAACAAGAGATTGACA
GTATCTCAATGGAAGATGGATTTCCATCTTGGGAACATCTACATAAACAG
TTGCCATACCTTGGACAAGTTGTCAATGAAACTTTACGCCTCTACCCGTC
AGGTAAATATTCTATGTTTCTTTCATAGACGAGACAATATTAATTTAACT
TTTTTTTGTTTTACGGGACGAGATGGAGTTTTTACTAGCTCCTATTTGAT
TTGAAATTAATAAGTTAATAAGTACAAACAATTACTAGACATAGGAAGGC
GGAATTCAAGGATAAATCAGGGAAGTCAGCGCTTATACTTACGTGTTTGA
AATACAGGTGACGCTCTCTTATTCGGTTTCAAGGGTTTGGATTTTTATCG
AATAAAGGGAGCTTATTGAATGGGAGAACGTCGTTTATGAAACTTTGTTG
TTGGCAGTGACTTTCAATATAATCAAACAATGGAGCGTATCTACAGAAGA
ACCTTAGAATTAGGGGACAAGCTGGAGTTTTTTACAAGCTCTTATTTGAT
TTGGTTGGTCGTTAACCAGTAATAAAACAATTCTGTTACTTTTTTCTAAA
GAACGCGTCATCTCTATCACTTCAAATGACCAATTAGTGAAGTATCTTGT
AAAAACTCAACTCATCACAGAATTAGAGAGCGTAACGACCTCGTACAAGT
TCGAATTAGAGATAGCCAACTGTACTTTCTTTTATTCAGCCTTTATGTTG
ATGCGTGAATGTACAAAGCCAACAACAGTCAATGGCATCTCCTTTGAAAA
AGGTGACGGAGTTCTCATCCCAACCTATTCGATGCATCGAGATCCTAAAG
TTTTCACTGATCCTGAACAATTCAATCCAGACCGGTTCGAGTAAGTCCAT
CAAAGCTCATTTTGAACTTGAAAAACCCAGTGGAATACCAAAGTGTTGTC
AGCCAATATTTCACTGTACCCTAAGCTCCCAAATAAATGTCTCCCCCGCT
TATTAAGTCGAAAAGTTTTTGCCTATCTATCTAAGGTGAAGTCGTCCTTC
AGGTTTTTTTATAAAATATCCCATCATGGACCATCACTTCAGGATTGCTC
CCAAAGGGATAGAGAATGGTGTGATATTTCGGGAAATTTGCGATCGTTAT
CCTAATGCTGCTTGTGGATGTGTGAATATGGAAAGATGGAAAGATGGGTA
CCCTCCCTAGGAAGTGACATTCGGAGAAGGGATAAAATTAAAAAGGTTTT
TTGAAATTTAGGTGCAAATACGGAAAATAATTGAAACTTGAAAGGAATAT
ATGAATCATAATTTTGTCCTTATATTTTATGCAGTTTTCCTTTTCCCTGT
GAGAAAATTTTCTTGCGCCTATTGTGAAAAATCACATCATCCAGTATCCA
ACCAGGATTACTCTGGGTGGGATAATGTTGGTGGGATATTTCTGGACATT
TGCGGTCGTATCCTAAAACAGCTATGTAATTTATAAAATATCAGTGGATG
AAATTGATAGACCCCTCAAAGTGTTCGAAATTATGTACAGTTCCAGAATT
GTTGAGGTTTCAGAGTTTGTTGAATATAATATGTTTCAAAGTTATATCAA
TGAGGATGTTTTGTAAGTGAAGTATTTTGTGGAGTATGTAAAATTGTTTA
TTTTGATCAGCTTTTGGAAAAAATCCCAAGGCCAAGAGAGTTAAAGGTGA
GAATATGTAGAGTCTGTGTGAAAAATTGAAAATTAAAATAAGAAAAGAAC
TTTCTATGCTCTGGAGGTGGAGTATGCACAATATTTGCATATTTATTTGG
TAGACTTGAGCGCCCCAAGACTGTGCAATTGAATAGAGCTGTGGGAGAAA
AATTCTGGTAGAATGTCTTTGGGGTGATAATAGACTAGAATTGCAGATTT
TATGCAATGAAGACTGCTGTAGCAGAAGATCTTAATGTTAAAATGTGAAA
TTAAAATGAACAACAGATGAGATGGAGACACCCCCACCAAGGGGGTGCCT
GGAGACAGGTGCGGATCCTGGAGTAAGCTCTCCTTGCCACTCTAGAGTCA
CCCACCACTCCAACGCCCCCTTTCCTATTAGAACCACTAGTTTAGCTAAC
ACAAGCTGAATTGCTTTTAGGCTGCGCGCATCTCCGGTTTTGATTTTGAT
ATAGTGGATGCTGCGTATCATGTATAAAATTTCCGTCCGAGATTTACCCT
AATATTTACCCTGTTTCAATTTCATTTAAAAAGTTATAAAAATTAGTGAT
TGTATTAACATCTAATCATTCAAATTTTTAATTGAAATTTGATGAAATTT
AAAGATCTATCATATTACATATTACTTTATCAAGCTAATCAATTTTCAAA
AATTCAAAAACAGAAAGACGGACGGGAATTTTATACACGATATGCTGCTC
CGAGATCTAATAATTTCCAAAGGATCAAACTATTTCTATAATAAAGAGGA
AAGATAAACATTTATCAAATTTGGCCAAATTTGACGTAGATTTAAAAAAT
CAAATGCAAAAACAAAGGTTTTTGTCGTATTAAAAGTTAAGGCCCTTTGG
AGAACTACCGGTATCTCGACCACGCTACTATAAGTATACTATCGTAGTCG
GCAGAGAACGTGTTCAAGATTCCCCATCTTTTGTAGAGTAAAAACTATTT
TTACACTTAGTTGTAAATGTAGTTTCAAAATAATTAACTATTTTAGGACC
AAACCATCAAGACATTATTATCCGTTCGGTGACGGCTACCGTATGTGTCC
GGGAAAAGAAATGGCTTTGTCCGAAATTAAAACCTACTTAGCTTCGATGT
TGAAAAACTTTGATTTGTCACTTGTTGACGAGAACCAAGAATTATGCGTC
AAATCATACATTTCAGCTCAAACCACAATGGCGGTGGATGAACCAATCCA
AATTCGTGTACAAAAAAGACGTCATTAGATGTAATTTATAATGTAACCAA
GGATGTCCTATATCTACCATCGGTTAAATTTTGCAGATTTTTCGAATCCA
TGGAAACAATTGATGATCTGTTTTCTGGATGTTATATCTCTGATCAACCT
CTACACCAATACTTCATGACAAAGAGTACGAGTTTACTTGTGTCTAATGA
CGGATGTTTGAAGTCATTGATGTGTTTTAATAGATACACTCTCTTGGACC
CCCCTCCCCCTGACCCACTGGAAAGTTTTTCCAAATTTTCGTCCCCGGTA
GAAAAAAATACCCTAAAATTTCAGGCCTATTTGCTTTTTTGACCGCTAAA
AACAAAAGAATTTTATTCCCCATTGGCGGGAGTTCGATAGAGATTTTATC
CCCACTGTGGGAAGAATTTCTAACGGGGCTTAGTGACAGAGGTGTAGATA
CAGATATTTGACTCCGATAAGTCCGAACACAACCTTCTTGTGAATTTCGG
GTTAACTGGTATATTCGGTTAATGAAAGACTGTATTATAGTATGGCGCGC
CAAAAGGCTATTTAATACTAACTTTTTTTATAATACCAACTTTTTTTTAT
AATATCAACTTTTTTTATAATATCAACTTTTTTTTTTATAATACCAACTT
TTTTTTTTATAAAACCAACTTTTTTTTTATAGTACCAACTTTTTTTTTAG
TTCAAAGTTTTTTCATAACACCAATTTTTGTCTCGCTTACTATGCGTGTA
TAATCGATCAAGTGTATTAAAATGAAAGTTGGTATTATAAAAAAAAAGTT
GATATTATAAAAAAAGTTGGTATTATAAAAAAAAGCTGGTATTATAAAAA
AAAGTTAGTATTAAAAAGCCTTTTTGGCGCGCCATATTATAGCCTCACAT
TCGTAACAAAAGTTGTGCAGGTATCATAACATATCCACATTAAAACGGAG
TATGGGAGGTGTTGAAGAACCAAGAACTTTTGTATATGGTTCATTGCAGA
AGAAAAAGTTGGTAATATTTTGTTTGGTTAAATTCAAGAAGGAATAAATT
TATTTTAAAAAGACAATTATTTCTTCATTATGTTAATTGTAAATAATCAT
GCATATATATAATCTTTAATATGGTGCTTATTAAAAAAACACATGAATCT
TAAAATAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005784XLOC_005784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010300-exon-sc0000104-1575043694:187600..187633TCONS_00010300-exon-sc0000104-1575043694:187600..187633Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1575043694:182618..183035TCONS_00010300-exon-sc0000104-1575043694:182618..183035Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1575043694:181803..182008TCONS_00010300-exon-sc0000104-1575043694:181803..182008Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1575043694:180219..180489TCONS_00010300-exon-sc0000104-1575043694:180219..180489Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1575043694:179282..179570TCONS_00010300-exon-sc0000104-1575043694:179282..179570Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1575043694:178544..178694TCONS_00010300-exon-sc0000104-1575043694:178544..178694Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1575043694:175374..176737TCONS_00010300-exon-sc0000104-1575043694:175374..176737Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1510915933:187600..187633TCONS_00010300-exon-sc0000104-1510915933:187600..187633Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1510915933:182618..183035TCONS_00010300-exon-sc0000104-1510915933:182618..183035Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1510915933:181803..182008TCONS_00010300-exon-sc0000104-1510915933:181803..182008Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1510915933:180219..180489TCONS_00010300-exon-sc0000104-1510915933:180219..180489Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1510915933:179282..179570TCONS_00010300-exon-sc0000104-1510915933:179282..179570Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1510915933:178544..178694TCONS_00010300-exon-sc0000104-1510915933:178544..178694Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1510915933:175374..176737TCONS_00010300-exon-sc0000104-1510915933:175374..176737Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1491911889:187600..187633TCONS_00010300-exon-sc0000104-1491911889:187600..187633Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1491911889:182618..183035TCONS_00010300-exon-sc0000104-1491911889:182618..183035Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1491911889:181803..182008TCONS_00010300-exon-sc0000104-1491911889:181803..182008Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1491911889:180219..180489TCONS_00010300-exon-sc0000104-1491911889:180219..180489Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1491911889:179282..179570TCONS_00010300-exon-sc0000104-1491911889:179282..179570Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1491911889:178544..178694TCONS_00010300-exon-sc0000104-1491911889:178544..178694Clytia hemisphaericaexon
TCONS_00010300-exon-sc0000104-1491911889:175374..176737TCONS_00010300-exon-sc0000104-1491911889:175374..176737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:175374..187633 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04686e-05	0.00148974	0	0	7.88817e-05	0	0.0181634	0.0156982	0.0146389	0	1.45798e-09	0.137535	5.54391e-08	4.71249e-10	0.0266529	1.5573	1.40531	0.0440774	0.0104639	0.000349767	0.0691345	0.0135847	0.0115614	0.461396	0.000418511	1.65847e-08	0.420242	0.463231	0.0256567	0.0020828
Blast
[Close]
BLAST of TCONS_00010300 vs. Swiss-Prot (Human)
Match: CP3A4 (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 168.318 bits (425), Expect = 3.805e-44
Identity = 137/477 (28.72%), Postives = 239/477 (50.10%), Query Frame = 3 
Query:  216 HDRLSSWNLPGPKSSLLPIDLFKGHKNQHQLHLLLD-DYVKTYGETFAFNYKGQPVVATTDEDIIHKILWKE-FPNFENRKFFVEMPWPCQHMVTMAKGAKAKMIRNLLKAVLDAKSIKNNWAHFQEANQDVEELLRDAALNMLEVNSTSLANGYIMQIITKMAFSLDCSNQSDLNKQLVQLSHLFTR----PPTWLQSCSSLPIIGNLLK-LSPWGFNSSLHQFIKIATDIVVERRKEKNREPQ-DVLDVLLAAQ-SKDSN----ISTEILLAQAIVLLTVVHXXXXXXXXXXXXXXXKHKDVQRRLQQEIDSISMEDGFPSWEHLHKQLPYLGQVVNETLRLYPSAFMLMRECTKPTTVNGISFEKGDGVLIPTYSMHRDPKVFTDPEQFNPDRFETKPSRH-----YYPFGDGYRMCPGKEMALSEIKTYLASMLKNFDLSLVDENQELCVKSYISAQTTMAVDEPIQIRVQKR 1592
            H       +PGP     P+       + H+   + D +  K YG+ + F    QPV+A TD D+I  +L KE +  F NR+ F  + +  +  +++A+  + K +R+LL     +  +K       +    +   LR  A     V    +   Y M +IT  +F ++  + ++     V+ +    R     P +L S +  P +  +L+ L+   F   +  F++ +   + E R E  ++ + D L +++ +Q SK++     +S   L+AQ+I+ +   + +T++ +S   Y +A H DVQ++LQ+EID++      P+++ +  Q+ YL  VVNETLRL+P A  L R C K   +NG+   KG  V+IP+Y++HRDPK +T+PE+F P+RF  K   +     Y PFG G R C G   AL  +K  L  +L+NF      E Q   +   +S    +  ++P+ ++V+ R
Sbjct:   30 HGLFKKLGIPGPT----PLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGF-MKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFL-SITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVL-QMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQ---IPLKLSLGGLLQPEKPVVLKVESR 496
The following BLAST results are available for this feature:
BLAST of TCONS_00010300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP3A43.805e-4428.72Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
back to top