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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010281 ID=TCONS_00010281|Name=TCONS_00010281|organism=Clytia hemisphaerica|type=transcript|length=1282bpRun BLAST on NCBI protein sequence of TCONS_00010281-protein >TCONS_00010281-protein ID=TCONS_00010281-protein|Name=TCONS_00010281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp RTVNYEAIGKFVDHLVQTGVNGVFVSGTTGEFTSLSMSERKMIAEAWLKFRun BLAST on NCBI transcript from alignment at sc0000104:579628..594673+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010281 ID=TCONS_00010281|Name=TCONS_00010281|organism=Clytia hemisphaerica|type=transcript|length=15046bp|location=Sequence derived from alignment at sc0000104:579628..594673+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000104:579628..594673+ >TCONS_00010281 ID=TCONS_00010281|Name=TCONS_00010281|organism=Clytia hemisphaerica|type=CDS|length=9405bp|location=Sequence derived from alignment at sc0000104:579628..594673+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010281 vs. Swiss-Prot (Human)
Match: NPL (N-acetylneuraminate lyase OS=Homo sapiens GN=NPL PE=1 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 2.164e-62 Identity = 108/267 (40.45%), Postives = 164/267 (61.42%), Query Frame = 3
Query: 9 VNYEAIGKFVDHLV-QTGVNGVFVSGTTGEFTSLSMSERKMIAEAWLKFGKDKLDMIIIQCGSSCMDETKEMVRHAKENGADAVACISPSFLKPMNEEYLSDYLEEVASEAPNTPFMYYHLPSFTGVKVDMSKLMSLCYEKIETFAGLKCSSENMYEMIX-XXXXXXXXXXXXYGFDWQFLGGLAMGADCAVCTSFNFIGNKFVEITKAYKNGNMKEAQSIQHKIALDFNPFCSKYHGVAFAKIATTLISGIDMGQPRRPLHQFSEK 803
+N+ IG++VD+LV + GV +FV+GTTGE SLS+SER+ +AE W+ GKDKLD +II G+ + E++E+ +HA E GAD +A I+P FLKP ++ L ++L+EVA+ AP PF YYH+P+ TGVK+ +L+ +KI TF GLK S ++ + + + + +G D Q L L MGA AV +++N++G K ++ +A++ + A + Q I N GV+ K TL+SGI MG PR PL + S +
Sbjct: 25 INFSVIGQYVDYLVKEQGVKNIFVNGTTGEGLSLSVSERRQVAEEWVTKGKDKLDQVIIHVGALSLKESQELAQHAAEIGADGIAVIAPFFLKPWTKDILINFLKEVAAAAPALPFYYYHIPALTGVKIRAEELLDGILDKIPTFQGLKFSDTDLLDFGQCVDQNRQQQFAFLFGVDEQLLSALVMGATGAVGSTYNYLGKKTNQMLEAFEQKDFSLALNYQFCIQRFINFVVKLGFGVSQTKAIMTLVSGIPMGPPRLPLQKASRE 291 The following BLAST results are available for this feature:
BLAST of TCONS_00010281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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