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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010245 ID=TCONS_00010245|Name=TCONS_00010245|organism=Clytia hemisphaerica|type=transcript|length=1010bp
aaagAAGTGTGGCTCCTATGGAAAAATTCGACAAGCTAACCGTTATAATT
GGAATAACATGCTCGCTCCTGTATGCGTTATTCTTCCAAATTGGTGATGG
TTTGTTTAAATATACATTCAACCATAGCGACGTTCGTGTTTTCGAGGCTT
TATTGATTCGATACATTATCAATTTAGTTATCGTTTCAAGCAATATGCTA
ATTGAAAAGATTTCACCCATTCAGAGCTTCACGAAAACATGTTATTTAGT
AGCTGCTGGCATTTTACGGTTATCTTGTGTCATCTTCCTTGGAATGGCCT
TGAAAAGGCTTGATATGGGCACCAATGCAGTCATTTTTGGTACACTTCCT
GCATTCTGTATTTTGTTTGGTTGGTTAttgttaaaagaaaaaacaaaatt
atctgATATGATGTACGGTTTATTATCCTACGTTGGAGTCGTCTTGGTAG
TCTGGGAACGAATTGAGACACCAAAAAATGATTATTATTCATATATTTTG
GGAATCGTTTTCAGTTTATGTTCGGTGTTATCTATATGCTTTTACTGTGt
cgtcataaaaaaaattacagagTCCACTTGCCTTCAAGTGACACTATTCT
ATATACACTTCACTGGACTACTAATCCTACCCTTTGCACCTTGGATATTC
GGCACAAGCTTCGTACTGATCAGATCGCCTCTGATTTTCACGTATCTTCT
ACTGGGAGCTGGAGTTTCATATTTTCTATGTGTCATTTGTGAAGTGATCA
GTTTGAGATGTTTAAATATTGCTTTGATTATGTTATTGAGGAATTCAGAA
TTTGTTTGGGCATATTCCTATGACATGATTATCACGCATATATTTCCGAA
TtggATTGTTATAATCGGCTTGTTGATTGTGATAGTGGCAACTTCAATGA
TTGCAGTCAATATGATTTATGATATCCCTTATTTGGCTACAATCAAACGA
TGGGAATCTAAGATCTGCAAAACTGTTTAGTTCGGCTAATTTGGTTTGCT
TTCCGGACTA Run BLAST on NCBI protein sequence of TCONS_00010245-protein >TCONS_00010245-protein ID=TCONS_00010245-protein|Name=TCONS_00010245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
RSVAPMEKFDKLTVIIGITCSLLYALFFQIGDGLFKYTFNHSDVRVFEAL
LIRYIINLVIVSSNMLIEKISPIQSFTKTCYLVAAGILRLSCVIFLGMAL
KRLDMGTNAVIFGTLPAFCILFGWLLLKEKTKLSDMMYGLLSYVGVVLVV
WERIETPKNDYYSYILGIVFSLCSVLSICFYCVVIKKITESTCLQVTLFY
IHFTGLLILPFAPWIFGTSFVLIRSPLIFTYLLLGAGVSYFLCVICEVIS
LRCLNIALIMLLRNSEFVWAYSYDMIITHIFPNWIVIIGLLIVIVATSMI
AVNMIYDIPYLATIKRWESKICKTV Run BLAST on NCBI transcript from alignment at sc0000104:19098..21043+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010245 ID=TCONS_00010245|Name=TCONS_00010245|organism=Clytia hemisphaerica|type=transcript|length=1946bp|location=Sequence derived from alignment at sc0000104:19098..21043+ (Clytia hemisphaerica)
aaagAAGTGTGGCTCCTATGGAAAAATTCGACAAGCTAACCGTTATAATT
GGAATAACATGCTCGCTCCTGTATGCGTTATTCTTCCAAATTGGTGATGG
TTTGTTTAAATATACATTCAACCATAGCGACGTTCGTGTTTTCGAGGCTT
TATTGATTCGATACATTATCAATTTAGTTATCGTTTCAAGCAATATGCTA
ATTGAAAAGATTTCACCCATTCAGAGCTTCACGAAAACATGTTATTTAGT
AGCTGCTGGCATTTTACGGTTATCTTGTGTCATCTTCCTTGGAATGGCCT
TGAAAAGGCTTGATATGGGCACCAATGCAGTCATTTTTGGTACACTTCCT
GCATTCTGTATTTTGTTTGGTTGGTTAttgttaaaagaaaaaacaaaatt
atctgATATGATGTACGGTTTATTATCCTACGTTGGAGTCGTCTTGGTAG
TCTGGGAACGAATTGAGACACCAAAAAATGATTATTATTCATATATTTTG
GGAATCGTTTTCAGTTTATGTTCGGTGTTATCTATATGCTTTTACTGTGt
cgtcataaaaaaaattacagagTCCACTTGCCTTCAAGTGACACTATTCT
ATATACACTTCACTGGACTACTAATCCTACCCTTTGCACCTTGGATATTC
GGCACAAGCTTCGTACTGATCAGATCGCCTCTGATTTTCACGTATCTTCT
ACTGGGAGCTGGAGTTTCATATTTTCTATGTGTCATTTGTGAAGTGATCA
GTTTGAGATGTTTAAATATTGCTTTGATTATGTTATTGAGGAATTCAGAA
TTTGTTTGGGCATATTCCTATGACATGATTATCACGCATATATTTCCGAA
TtgggtaagtttttttttatcattgtaTCTTTATTACCTCTGCAGATTTT
TCTTCTTGAAGAGAATTTTAAACCTTCATATCACAAACCTGTtgaacccc
ttcccactggtATAAAGCATTGATAGGTATAGATAAAAGGATATACAAAC
CATCATAGGCAAAAGAACTACTCGATGATTAGAGATTCCTGAAAGTTCCT
TTTAgtttttctcaacttttttatTGAACGCACATCTGCTCAGATTTGGG
AAAATCTGCAAAGATTTGTGTATTTTTCCCCTgcaaattgaatagaaaat
tagTCATGTGGCAGGATACAccaatcctatgaaataggctaatcaTGGGC
TAATTTATGACAGTTTGTTTTCAGTTTGTTTGTTTACTTTACAGATTGTT
ATAATCGGCTTGTTGATTGTGATAGTGGCAACTTCAATGATTGCAGTCAA
TATGATTTATGATATCCCTTATTTGGCTACAATCAAACGATGGGAATCTA
AGATCTGCAAAACTGTTTAGTTCGGCTAATTTGGTTTGCTTTCCGGACTA
CAATTCCTTATGCTATTATCATGGCTTGGTAATATTACACTCTTAATTTA
GCCATTAACAAACGATAAATTTCCTCGTAAAAGGTCCAAATCGTTANTCC
CACTGGTATAAAGCATTGATAGGTATAGATAAAAGGATATACAAACCATC
ATAGGCAAAAGAACTACTCAATGATTAGAGATTCCTGAAAGTTCCTTTTA
gtttttctcaacttttttatTGAACGCACATCTGCTCAGATTTGGGAAAA
TCTGCAAAGATTTGTGTATTTTTCCCCTgcaaattgaatagaaaattagT
CATGTGGCAGGATACACCAATCCTATGAAATATGCTAATCATGGGCTAAT
TTATGACAGTTTGTTTTCAGTTTGTTTGTTTACTTTACAGATTGTTATAA
TCGGCTTGTTGATTGTGATAGTGGCAACTTCAATGATTGCAGTCAATATG
ATTTATGATATCCCTTATTTGGCTACAATCAAACGATGGGAATCTAAGAT
CTGCAAAACTGTTTAGTTCGGCTAATTTGGTTTGCTTTCCGGACTA Coding sequence (CDS) from alignment at sc0000104:19098..21043+ >TCONS_00010245 ID=TCONS_00010245|Name=TCONS_00010245|organism=Clytia hemisphaerica|type=CDS|length=1956bp|location=Sequence derived from alignment at sc0000104:19098..21043+ (Clytia hemisphaerica)
agAAGTGTGGCTCCTATGGAAAAATTCGACAAGCTAACCGTTATAATTGG
AATAACATGCTCGCTCCTGTATGCGTTATTCTTCCAAATTGGTGATGGTT
TGTTTAAATATACATTCAACCATAGCGACGTTCGTGTTTTCGAGGCTTTA
TTGATTCGATACATTATCAATTTAGTTATCGTTTCAAGCAATATGCTAAT
TGAAAAGATTTCACCCATTCAGAGCTTCACGAAAACATGTTATTTAGTAG
CTGCTGGCATTTTACGGTTATCTTGTGTCATCTTCCTTGGAATGGCCTTG
AAAAGGCTTGATATGGGCACCAATGCAGTCATTTTTGGTACACTTCCTGC
ATTCTGTATTTTGTTTGGTTGGTTAttgttaaaagaaaaaacaaaattat
ctgATATGATGTACGGTTTATTATCCTACGTTGGAGTCGTCTTGGTAGTC
TGGGAACGAATTGAGACACCAAAAAATGATTATTATTCATATATTTTGGG
AATCGTTTTCAGTTTATGTTCGGTGTTATCTATATGCTTTTACTGTGtcg
tcataaaaaaaattacagagTCCACTTGCCTTCAAGTGACACTATTCTAT
ATACACTTCACTGGACTACTAATCCTACCCTTTGCACCTTGGATATTCGG
CACAAGCTTCGTACTGATCAGATCGCCTCTGATTTTCACGTATCTTCTAC
TGGGAGCTGGAGTTTCATATTTTCTATGTGTCATTTGTGAAGTGATCAGT
TTGAGATGTTTAAATATTGCTTTGATTATGTTATTGAGGAATTCAGAATT
TGTTTGGGCATATTCCTATGACATGATTATCACGCATATATTTCCGAATt
ggATTGTTATAATCGGCTTGTTGATTGTGATAGTGGCAACTTCAATGATT
GCAGTCAATATGATTTATGATATCCCTTATTTGGCTACAATCAAACGATG
GGAATCTAAGATCTGCAAAACTGTTTAGagAAGTGTGGCTCCTATGGAAA
AATTCGACAAGCTAACCGTTATAATTGGAATAACATGCTCGCTCCTGTAT
GCGTTATTCTTCCAAATTGGTGATGGTTTGTTTAAATATACATTCAACCA
TAGCGACGTTCGTGTTTTCGAGGCTTTATTGATTCGATACATTATCAATT
TAGTTATCGTTTCAAGCAATATGCTAATTGAAAAGATTTCACCCATTCAG
AGCTTCACGAAAACATGTTATTTAGTAGCTGCTGGCATTTTACGGTTATC
TTGTGTCATCTTCCTTGGAATGGCCTTGAAAAGGCTTGATATGGGCACCA
ATGCAGTCATTTTTGGTACACTTCCTGCATTCTGTATTTTGTTTGGTTGG
TTAttgttaaaagaaaaaacaaaattatctgATATGATGTACGGTTTATT
ATCCTACGTTGGAGTCGTCTTGGTAGTCTGGGAACGAATTGAGACACCAA
AAAATGATTATTATTCATATATTTTGGGAATCGTTTTCAGTTTATGTTCG
GTGTTATCTATATGCTTTTACTGTGtcgtcataaaaaaaattacagagTC
CACTTGCCTTCAAGTGACACTATTCTATATACACTTCACTGGACTACTAA
TCCTACCCTTTGCACCTTGGATATTCGGCACAAGCTTCGTACTGATCAGA
TCGCCTCTGATTTTCACGTATCTTCTACTGGGAGCTGGAGTTTCATATTT
TCTATGTGTCATTTGTGAAGTGATCAGTTTGAGATGTTTAAATATTGCTT
TGATTATGTTATTGAGGAATTCAGAATTTGTTTGGGCATATTCCTATGAC
ATGATTATCACGCATATATTTCCGAATtggATTGTTATAATCGGCTTGTT
GATTGTGATAGTGGCAACTTCAATGATTGCAGTCAATATGATTTATGATA
TCCCTTATTTGGCTACAATCAAACGATGGGAATCTAAGATCTGCAAAACT
GTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010245-exon-sc0000104-1491911889:19098..19951 | TCONS_00010245-exon-sc0000104-1491911889:19098..19951 | Clytia hemisphaerica | exon |
| TCONS_00010245-exon-sc0000104-1510915933:19098..19951 | TCONS_00010245-exon-sc0000104-1510915933:19098..19951 | Clytia hemisphaerica | exon |
| TCONS_00010245-exon-sc0000104-1575043694:19098..19951 | TCONS_00010245-exon-sc0000104-1575043694:19098..19951 | Clytia hemisphaerica | exon |
| TCONS_00010245-exon-sc0000104-1491911889:20888..21043 | TCONS_00010245-exon-sc0000104-1491911889:20888..21043 | Clytia hemisphaerica | exon |
| TCONS_00010245-exon-sc0000104-1510915933:20888..21043 | TCONS_00010245-exon-sc0000104-1510915933:20888..21043 | Clytia hemisphaerica | exon |
| TCONS_00010245-exon-sc0000104-1575043694:20888..21043 | TCONS_00010245-exon-sc0000104-1575043694:20888..21043 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104 | supercontig | sc0000104:19098..21043 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000620 | EamA_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
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