TCONS_00010235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010235
Unique NameTCONS_00010235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010235 ID=TCONS_00010235|Name=TCONS_00010235|organism=Clytia hemisphaerica|type=transcript|length=441bp
GTGATGGGAGGTGTGATTCCCCAGGATATAGTGCCAAGTATGGGACATAC
ACTATAATGGATGGCCTAACGAATTTTATCTTGGACTTTCATGTCTCTCA
TTGCAAAATGGCGGGAAACTCAGCCAGAATGGAGCTAGATGGACTGAAAA
ATGTGCTACGTCGCTTAGATGAACAGAAGATACCGATCTCCAGTCTGACT
ACTGACCGACACAAACAAGTTCGGTGCTTTATGAGAAAAATGCGAAAGGA
TATTGACCACCAGTTTGACGTCTGGCATATCGGTcggaacattaaaaaaa
aacttctaaaaaTTGCCAAGAAGAAATCATGCATTGATGCATTTAGATTT
ACAGCCTTGGATCAAATCAATCATTAACCATTTTTGGTGGTGTTGTGCCT
CTTGTGAAGGTGATGCAGAGGTGCTAAAGGAAAACTGGGTT
Run BLAST on NCBI

protein sequence of TCONS_00010235-protein

>TCONS_00010235-protein ID=TCONS_00010235-protein|Name=TCONS_00010235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
DGRCDSPGYSAKYGTYTIMDGLTNFILDFHVSHCKMAGNSARMELDGLKN
VLRRLDEQKIPISSLTTDRHKQVRCFMRKMRKDIDHQFDVWHIGRNIKKK
LLKIAKKKSCIDAFRFTALDQINH
Run BLAST on NCBI

transcript from alignment at sc0000103:547589..548029

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010235 ID=TCONS_00010235|Name=TCONS_00010235|organism=Clytia hemisphaerica|type=transcript|length=441bp|location=Sequence derived from alignment at sc0000103:547589..548029 (Clytia hemisphaerica)
AACCCAGTTTTCCTTTAGCACCTCTGCATCACCTTCACAAGAGGCACAAC
ACCACCAAAAATGGTTAATGATTGATTTGATCCAAGGCTGTAAATCTAAA
TGCATCAATGCATGATTTCTTCTTGGCAAtttttagaagtttttttttaa
tgttccgACCGATATGCCAGACGTCAAACTGGTGGTCAATATCCTTTCGC
ATTTTTCTCATAAAGCACCGAACTTGTTTGTGTCGGTCAGTAGTCAGACT
GGAGATCGGTATCTTCTGTTCATCTAAGCGACGTAGCACATTTTTCAGTC
CATCTAGCTCCATTCTGGCTGAGTTTCCCGCCATTTTGCAATGAGAGACA
TGAAAGTCCAAGATAAAATTCGTTAGGCCATCCATTATAGTGTATGTCCC
ATACTTGGCACTATATCCTGGGGAATCACACCTCCCATCAC

Coding sequence (CDS) from alignment at sc0000103:547589..548029

>TCONS_00010235 ID=TCONS_00010235|Name=TCONS_00010235|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0000103:547589..548029 (Clytia hemisphaerica)
TTAATGATTGATTTGATCCAAGGCTGTAAATCTAAATGCATCAATGCATG
ATTTCTTCTTGGCAAtttttagaagtttttttttaatgttccgACCGATA
TGCCAGACGTCAAACTGGTGGTCAATATCCTTTCGCATTTTTCTCATAAA
GCACCGAACTTGTTTGTGTCGGTCAGTAGTCAGACTGGAGATCGGTATCT
TCTGTTCATCTAAGCGACGTAGCACATTTTTCAGTCCATCTAGCTCCATT
CTGGCTGAGTTTCCCGCCATTTTGCAATGAGAGACATGAAAGTCCAAGAT
AAAATTCGTTAGGCCATCCATTATAGTGTATGTCCCATACTTGGCACTAT
ATCCTGGGGAATCACACCTCCCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005753XLOC_005753Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010235-proteinTCONS_00010235-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010235-exon-sc0000103-1491911889:547589..548029TCONS_00010235-exon-sc0000103-1491911889:547589..548029Clytia hemisphaericaexon
TCONS_00010235-exon-sc0000103-1510915933:547589..548029TCONS_00010235-exon-sc0000103-1510915933:547589..548029Clytia hemisphaericaexon
TCONS_00010235-exon-sc0000103-1575043694:547589..548029TCONS_00010235-exon-sc0000103-1575043694:547589..548029Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:547589..548029 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.692581	0.338791	0.206223	0	0.393209	0.552176	0.257728	0.319237	0.464789	0.407379	0.915328	0.844958	0.607836	0.931859	1.14797	2.00028	2.60094	1.53095	0.887118	1.08176	0.876683	0.797032	0	0	0.209685	0.223782	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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