TCONS_00010222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010222
Unique NameTCONS_00010222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010222 ID=TCONS_00010222|Name=TCONS_00010222|organism=Clytia hemisphaerica|type=transcript|length=571bp
TGGGCATAGGTCGGCCATTTCTGCATTTCAGCCAAACATAGAGGGGAATC
CTGTTGGACAGCACCCTCAAGTGGCAGCCCTTATGAAAGGGATAAGTAGA
GAGAAACCACAGACCCCGAAGTATACTCATATATGGGATATAGACACTGT
TCTAAACTACTTCAGAAGTTTACCTGAGAATGAAAATTTAGACCTCAAAA
CCCTTTCACTGAAAACAATTACATTATTAGGCCTGGTGGCACCTAAACGA
GGGNACCCTTTCACTGAAAACAATTACATTATTAGGCCTGGTGGCACCGA
AACGAGGCTCAGAACTGGTACTCTTAGATACAACTTTTATGGGGAAAACA
GAAACTACCTTCAAATTCCAAGTGGTAGACccaacaaaaaattttaaaca
ggGGAAAAAGAATGAACCTATAGAATTCCACAAATTTGTACAAGAGACAA
AGCTATGTCCACATCACACTTTATGTACATATATAAGGGTAACCTCAGAG
TTCAGAGAGCAAcacaaaacatcaaaattgtTTGTAAGCCATGCAGCCCC
TCATAATACGGTTGGGAAAGA
Run BLAST on NCBI

transcript from alignment at sc0000103:365313..365883

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010222 ID=TCONS_00010222|Name=TCONS_00010222|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at sc0000103:365313..365883 (Clytia hemisphaerica)
TCTTTCCCAACCGTATTATGAGGGGCTGCATGGCTTACAAacaattttga
tgttttgtgTTGCTCTCTGAACTCTGAGGTTACCCTTATATATGTACATA
AAGTGTGATGTGGACATAGCTTTGTCTCTTGTACAAATTTGTGGAATTCT
ATAGGTTCATTCTTTTTCCcctgtttaaaattttttgttggGTCTACCAC
TTGGAATTTGAAGGTAGTTTCTGTTTTCCCCATAAAAGTTGTATCTAAGA
GTACCAGTTCTGAGCCTCGTTTCGGTGCCACCAGGCCTAATAATGTAATT
GTTTTCAGTGAAAGGGTNCCCTCGTTTAGGTGCCACCAGGCCTAATAATG
TAATTGTTTTCAGTGAAAGGGTTTTGAGGTCTAAATTTTCATTCTCAGGT
AAACTTCTGAAGTAGTTTAGAACAGTGTCTATATCCCATATATGAGTATA
CTTCGGGGTCTGTGGTTTCTCTCTACTTATCCCTTTCATAAGGGCTGCCA
CTTGAGGGTGCTGTCCAACAGGATTCCCCTCTATGTTTGGCTGAAATGCA
GAAATGGCCGACCTATGCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005740XLOC_005740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010222-exon-sc0000103-1491911889:365313..365883TCONS_00010222-exon-sc0000103-1491911889:365313..365883Clytia hemisphaericaexon
TCONS_00010222-exon-sc0000103-1510915933:365313..365883TCONS_00010222-exon-sc0000103-1510915933:365313..365883Clytia hemisphaericaexon
TCONS_00010222-exon-sc0000103-1575043694:365313..365883TCONS_00010222-exon-sc0000103-1575043694:365313..365883Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:365313..365883 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.19601	0	0	0.108563	1.00655	0.658264	0.562382	0.394277	0	0	0.119817	0.151281	0	0	0.223563	0.238885	0.377253	0.0760736	0	0.111557	0	0	0.112906	0.102161	0.373589	0.619752	0.13762	0	0	0.110827
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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