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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010211 ID=TCONS_00010211|Name=TCONS_00010211|organism=Clytia hemisphaerica|type=transcript|length=407bp
CACAGTTGCAAAAAATTACATCACCTTCACAACATGTCGAAAAGAAAATC
ACAAAACGAAAATACCCCCCTTCAACACAGACAACCATCAGTGATGATAC
AGTGAAAGACTTTATAGTGACTATGTCACCGAATAAGATCTCCAAATACG
CCAAACCCTACTTTAACTTGCATGTTGAGACGGAGGACCACACAGTAAAA
CGTGCTGTATGCTACTCACCACATAAGAGGCGGTTATTGGAAGAAGCTGA
ATCAAGCAAAAGCGGTGTTTGCATTACCAAAATACACACATATGATAATG
CTACAATCAAAATCGGTGACAATTCCTTGATAAAGCATGAATCGTTGGGC
TTCAAGCCTGAATTCAAGATGGAGCCAACAAAAATTGAACATCTGATTAA
TGAGGTT Run BLAST on NCBI transcript from alignment at sc0000103:401491..404638- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010211 ID=TCONS_00010211|Name=TCONS_00010211|organism=Clytia hemisphaerica|type=transcript|length=3148bp|location=Sequence derived from alignment at sc0000103:401491..404638- (Clytia hemisphaerica)
CACAGTTGCAAAAAATTGTAAGTTTTAATCTAAAATAATCCTGTGGTTAA
ATGAATTGCCAACCACAACAATCTTCCTACTGGGGGGTCACACAGTGATC
ATCACTCAACAGCACATATTTTTTAAGAAAGAAGGCAATATTAACATTGA
AATACTATTTTGAGAAGGTACCTTTTGTTACACTGTTACAATAATATTAT
TTCTTTTATAGACATCACCTTCACAACATCTCTAAAAGAAAATCACAAAA
CGAAAATACCCCCNCCATTGCACCATTTTCGTTGTATACAAATAATGTCG
CAGAACATGTCTTTTCTAACATTGCTCTTGCGTACAAAGAAGGTATCGAA
ATAATGGGGAGTCGTAATTTACCTGGAGCTACACGTCTCACATTGAACCA
TCATGCTATAGATTTTTCCTTCAATATGATACTTATCTACCGTCAACAAC
ATTTTAACAATGATCATTTTTTGTATATGATTCAACATCTCATGGGAAAT
TACAACAATGTTCATATAATATTAGGAGATTTCAATAAGAACTATTTTAC
CGAAGAATCAATTTTTCAAGAACATATTTGCAAGATTACGAGATGAATGT
TCAAGAACCAACTCACGTGTCTGGCTCATTAATTGACCATGTTTATATAC
ATAAAGATCTGATGGAACTATTTAAAATTACCAGTTACATTCACAGCATA
TATTATTCTGATCACGAAGCTATCCAAATAGTTTTTAAGAAGCTCAACGA
AAGTTAAATAATTGCCTTTGTCCTCCTAGAATAAATAAATTTAAAAAAAA
AACTTGAAAATGTGAAAAAAGATATTTGACATATGAAATACGATTTACAC
TAAATATACAAACATATAGCGTTTAAACATACACTGCTGGTAAACAACTT
TAATTTAATAAACACTTTTAACACGTCAAAAGCTTCTTATGTTGCCCTGG
ATTCGAGGTTGGTATCCGATTTGTCTCCCTCCCGTGAGTATTACACCGAT
TTCATTATTATCCCCGTTTCGACATATTCTCCCGTTTACGGAACACGGAA
ACTTGTTTCCGGACCTCCTGACGATAAGAAGAGCGCGTCCTGCAAAATCG
ACCTTTCCTGTCAGAAGCCCATTGAAAGGAGACACAGTTGCAAAAAATTG
TAAGTTTTAATCTAAAATAATCCTGTGGTTAAATGAATTGCCAACCACAA
CAATCTTCGTACTGGGGGGTCACACAGTGATCATCACTCAACAGCACATA
TTTTTTAAGAAAGAAGTCAATACTGTATTAATATTGAAATACTATTTTGA
GAAGGTACCTTTTGTTACACTGTTACAATAATAAATATTATTTCTTTTAT
AGACATCACCTTCACAACATGTCGAAAAGAAAATCACAAAACGAAAATAC
CCCCCTTCAACACAGACAACCATCAGTAAGTGATATCATNGAAACGAAAA
TACCCCCTTCAACACAGACAACCATCAGTAAGTGATATCATTCCAATTCC
ATTGAACAGGGGTAGGGATGTGAACTGCTGCCAACAAGAATGCCTTATAA
AATATCATTCAAACAGTTTTGGCTGTCGACTAGAAAATGATGGTCTTCTG
ACGACACATCAAATGATCAGGCTATCAGACATTTTCTTCCATTATAATTT
TTGAAACAACTTGAAGTTTTTCAAGTCAGATTGGGCCATTCCAGAAATTT
TTGTTAGCCTAGTACCCGCGTCAGACGACATGCATTAGGCCATTCCAGGT
TTTGTCCGTAAATGGGGGGGGGGCGGAACAACAACACGGAATTTCTGAAG
GTAAATTGGTTTTGAAAAATTCTGAATTTCCAAACCTTAAGAACAAAAAT
TACAAAATTTCCAAGGCATTGAGTTAAGACGAGTAAAAACGTCTCTTTAA
AAAAACTATGTAATTTCAGAAAGTATTTTGAAAATCAAAAGGAAATTTCA
AGGCCTTAATTTTTGCAAAAAACGGTGTAGTCCGCAGGGGGTATACGGAA
AATCTTTTCTGGCCTTGGAAACAATTTTTTATTCCAGTGCTGGTTGGAAA
TCCTGAAAATCCATTTCAAAATTTCACTCTTTTTGCCTTTTTTATTCCAT
TGCTGTGAAAAATAATACTTTTCTTCTCTCCCCCCAAATTTTGAATTTTC
GTGAAAACCTTTCCCTCAGAAATCCTGTTACAGACAAATTCTGGAACAGT
CTATTGTGGGTCATGTAGCTATATCAGCTCTGGATAAAAAGTTGTGGATC
CTATGGAAAGTGTGACTTAGCAATTTTCTGAGTTTGGAGAAGGGTCTTAA
AAACAACTTTTGGAGGAATACACCTTTCCCGTAATTCAAATTTCTCAGAG
AAATGGCCTGGGAAAATGTGCGCTCCACCGTTGTGTATAAAATTGTTTGG
GAGGTAAAAAACGCGTATTTGACTGCGAGGTGTTAGGGAAAGTGGGATTT
GATTCTCTAACTTTTGTCAGCAACCTTCTTTTGGCAAAATATTTTCAGGG
TGGTATATCATGAATAGATTGAACATACAAAAATTTGAGGGGATTTTGTG
CGACAGAACTTAAGAAAAGCTCAAAAAACCAACTTTCCCTAAGGGAATGC
AGGCAAAAACAGGTTTGTTTACCTCCAGAGACCAAACGGTGGAGAGCATC
AAAATAATGCTCGTGCATTAGTTTTACGAATTACGGGAAAGGTGTATTAA
CACTCTTGGAAATTTCCAAAAATGCACCGAAACCCCTGGAAAGTTTGTCA
ATGCCCCTGTACTTAAAATGGAATAAAGTTCTAATATGGCAACCCAATGT
AACTAAAGAATTTATTTGTTTACCTCAATAGGTGATGATACAGTGAAAGA
CTTTATAGTGACTATGTCACCGAATAAGATCTCCAAATACGCCAAACCCT
ACTTTAACTTGCATGTTGAGACGGAGGACCACACAGTAAAACGTGCTGTA
TGCTACTCACCACATAAGAGGCGGTTATTGGAAGAAGCTGAATCAAGCAA
AAGCGGTGTTTGCATTACCAAAATACACACATATGATAATGCTACAATCA
AAATCGGTGACAATTCCTTGATAAAGCATGAATCGTTGGGCTTCAAGCCT
GAATTCAAGATGGAGCCAACAAAAATTGAACATCTGATTAATGAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010211-exon-sc0000103-1575043694:404622..404638 | TCONS_00010211-exon-sc0000103-1575043694:404622..404638 | Clytia hemisphaerica | exon |
| TCONS_00010211-exon-sc0000103-1575043694:403214..403286 | TCONS_00010211-exon-sc0000103-1575043694:403214..403286 | Clytia hemisphaerica | exon |
| TCONS_00010211-exon-sc0000103-1575043694:401491..401807 | TCONS_00010211-exon-sc0000103-1575043694:401491..401807 | Clytia hemisphaerica | exon |
| TCONS_00010211-exon-sc0000103-1510915933:404622..404638 | TCONS_00010211-exon-sc0000103-1510915933:404622..404638 | Clytia hemisphaerica | exon |
| TCONS_00010211-exon-sc0000103-1510915933:403214..403286 | TCONS_00010211-exon-sc0000103-1510915933:403214..403286 | Clytia hemisphaerica | exon |
| TCONS_00010211-exon-sc0000103-1510915933:401491..401807 | TCONS_00010211-exon-sc0000103-1510915933:401491..401807 | Clytia hemisphaerica | exon |
| TCONS_00010211-exon-sc0000103-1491911889:404622..404638 | TCONS_00010211-exon-sc0000103-1491911889:404622..404638 | Clytia hemisphaerica | exon |
| TCONS_00010211-exon-sc0000103-1491911889:403214..403286 | TCONS_00010211-exon-sc0000103-1491911889:403214..403286 | Clytia hemisphaerica | exon |
| TCONS_00010211-exon-sc0000103-1491911889:401491..401807 | TCONS_00010211-exon-sc0000103-1491911889:401491..401807 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:401491..404638 - |
Blast
The following BLAST results are available for this feature:
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