TCONS_00010209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010209
Unique NameTCONS_00010209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1215

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010209 ID=TCONS_00010209|Name=TCONS_00010209|organism=Clytia hemisphaerica|type=transcript|length=1215bp
TGGAAACAACATGGCGAAGCAAATGTCTTTTGAGAAGTTCAAGTCCTCTT
CAATGagatcaatttcaaaaaatgtggtACACCCAAGCAGTCCATACGAT
CCGAAGACAATGAGAACATTTCACCATCCTGCATCCATTTCCTCATCGCC
ATCTACCCCAACCACCAAATCCAAAACGAAGAAACCAATGGCAATGAGAA
AGAAAGTTGATAAAGCTCGGTCTTTTGTTGATTCTTCTGATGAATATCAA
TCTGAAGATCAAGATTCATCAGCACCTTTGTTTTCGCCAAAAACATCAAC
TCCATCGCAAAATGTGAACAAAGAGCTGAAGGACGCCAAAACAGAGACGT
GTTCGTAAAAGTGTTGGTGACTCAATGGATGTTGATGGGTATTGTTGGGA
CTTATCCAATGGTAAAGGcCCTTTTTCTGGTGACAATAAGAAGCTATCTG
GGCATGCTATCGAAAAGGTTCTTGGACTTTACCCTGAAATGGACAAAGTA
GAGATTGAAAATGCTATTCGTATTAACTTTCGTTCACGAAAAGACAACAA
GCGCAAACTAGAAAACAATCCTAATTACCGCGCAGATTCATCCAAAAACA
GCAGAAAAGACACTAAACTGAACAATCGCTTGAAGGCATTAAAGCATCTG
AATGTAGATGATGAAACAAGGAGTGCCATTTCTGGTATTCTTGTTCGTCC
ACTTATGTCCTCGGATGATGAAGAAATAGACGGAAACAAGAAGACATTTA
TTGTTCGTAAACCATGTTGGAGGACCGAAGGTGTAACCAATTGCTTCCAT
ACTCTTGATGAGGCACGTCAGAGTAATCTGTCCAAACATTCTCTTTTCCG
TCTCATGGATAGAAAAGATGGTCCACCCTCTGATAGGGAAGAACCGAAAT
GGTCGGAGGAGATGGTGAAAGccatcaaattttttgattgaataataGTC
CAAATGTTCCAGTCAGAATAGCATGAAAAACTAatatagaaaatatttga
aatctaGGAATACGAGGAAAATGAGGCTTATGACGTCATGACAATAATAT
TTGGAATTTAGCTATCTTAAATTCATtcttatcagtttttcatgcccttt
caactggtatatttttttaattttgagctTAAATATTTATTCTATCTATA
ATACCTGGTCATGGCATTTTGTCACCTAAATTTTGCAACATAATATTAAT
CTTTAAcaaaaattg
Run BLAST on NCBI

transcript from alignment at sc0000103:338827..342285-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010209 ID=TCONS_00010209|Name=TCONS_00010209|organism=Clytia hemisphaerica|type=transcript|length=3459bp|location=Sequence derived from alignment at sc0000103:338827..342285- (Clytia hemisphaerica)
TGGAAACAACATGGCGAAGCAAATGTCTTTTGAGAAGTTCAAGTCCTCTT
CAATGAGATCAATTTCAAAAAATGTGGTACACCCAAGCAGTCCATACGAT
CCGAAGACAATGAGAACATTTCACCATCCTGCATCCATTTCCTCATCGCC
ATCTACCCCAACCACCAAATCCAAAACGAAGAAACCAATGGCAATGAGAA
AGAAAGTTGATAAAGCTCGGTCTTTTGTTGATTCTTCTGATGAATATCAA
TCTGAAGATCAAGATTCATCAGCACCTTTGTTTTCGCCAAAAACATCAAC
TCCATCGCAAAATGTGAACAAAGAGCTGAAGGACGCCAAAACAGGTACGT
CAGAATGCTTTTATTTTTCCTTATTTTCTATGAAATACTATCTTAATCTG
CATTCTGTGTTCTGACATTTTGTTTTATTAACAGTGGACTGAAGCACTTA
AATTTTTGAAGATTAGAAACAATGTGCTAAAAACACTTTTGAAAACTACC
TTGATTTTGACAGTAGTCGTAGTGATAAATGTATTCCATTATTAATGCAT
TAACATAGTAATGAACAACTTCTTAGGGGTCTGATCCTTGATTTAAAGGG
GTTTGGAGAGCATTATTTAAAAATTTTATCTGGGTTGTTTTAAGGGTCCT
GGAATGCTCCTCACAAGAGGTTTGGGGTCACTGGGAAGCTAAATTTATTT
TGATATTTGTGTTTTCAGAAATAGATAATTTGAAGCAGTTGTGTTCGAAA
ATGCAAGAACAATTAGAAGACCTGCAAGCAAAGTCATCAAAAGGAGGAAG
AAAGAGGAAATTAGAGGCTTCTATTAAAGCTAAGGTTAGAAAGGATCTAG
ACTATTCAAATATTCATAATCAAACATTAGCATTACAGAGAATCAAGATA
GTCAGACTTCAAGAGAATTATTAAATTATTATTATTTTTAAAAATGAGTT
AACTTTAGAACTATGAGTAAAATATAGTTACTAGTACAATTGATTGACAA
TTAGGTTGTTATTTTTCTTGAGGAAATATCTAATGTTCTTGCTGTTATAA
ACATAGAAAATATTTAAGAAAGGTTTATAAAAGATTTTCTTTTATCTAGA
GACGTGTTCGTAAAAGTGTTGGTGACTCAATGGATGTTGATGGGTATTGT
TGGGACTTATCCAATGGTAAAGGGTGAGTGAAAGTCTTATACTCATTTTT
TTAAGAGATATATACAAGTTTTGATGGACACTATGATAAGTTCTTCTTAT
TTAAGGCTTTGCAGGCTCTTAGAACACTCAATTTCTTAGGAAAGACAAAA
ATACTCACAAAATTGTGTTCACATTAAGAAAATTTTCTGTCTTATAACCA
TAAGGCCTGAAAAGTTTTTGAAATGTTACTTTTAATAATCTTTGACCAAG
GTAAATAAATAACCTTGTTTTGCCTTTTTTATTTCATTTCAGTTCAAATA
TGTCATTTTAGAGACATAAACATAGGTCTAAGTTAGTTTTGACACTGAAA
AAATACTTTTGTCATAATAGGACTTAGCTTTTTCGTCATGCCTTACATCT
GATTGTTTCAAATTAATGCCTCTCCTAGTGGGGTGTTTACTTGAGCAGGC
ATTAAAAAGAAGGGGCGTTTGTTACAGGCAATACAGTACTTAAAAATTAC
AACCCAATTCTGTTGTTGTGGGCTAATTTAAATTATTGTTGTTGTTTCCC
TACAATCACTTGAAACGTGGGCCTATGCTGGAGTTAAAATATTTAAATAT
ATACAATATATTTAATTTATTTTCAGCCCTTTTTCTGGTGACAATAAGAA
GCTATCTGGGCATGCTATCGAAAAGGTTCTTGGACTTTACCCTGAAATGG
ACAAAGTAGAGATTGAAAGTAAGTTCAGGTCCTAAATCCTTACATATTTT
TACTTTTGTGTAGCAGATGTTTATATTCTGTTTTCATTTGCCCTTTTTAT
ACTGATTTCGATGAGCTTTAGAATTTTTGCAAGCTCTCATTACTTGACCT
CGGGTAATATTTCTCTATACAGCCCTCACTATTACTGTATTAGGAGGACC
TTTATCCATGATAGATAATTTTAATAAATATTATATAAAAGGTAAAACAA
ATATGAGTTATATCAATTAAAAAAAATTGCTTATATTTTAGATGCTATTC
GTATTAACTTTCGTTCACGAAAAGACAACAAGCGCAAACTAGAAAACAAT
CCTAATTACCGCGCAGATTCATCCAAAAACAGCAGAAAAGACACTGTAAG
TAATATAATCTTTATTTGAATCCAAATACTATTAGGACACATCTTTTGCA
AGAACTGACTTACTGAAAAACTAAATTCTTCAAAGAAAATTTACCATAGA
ACTTTTTTTGGTGGGAACTAATTTTGACGAATGGCAAAAATCGAAAAATC
CTGAAAATTTTTTATTTTGGCGAGAACTAATTTTGGGAAATGACAGCGTA
AATTTATCTTGCCTCATTTAAAGCTTTTTTGTGAACTCAAGATATATTTA
GGCAACATACCAAAAAATTTAATTGTTTCACTTTGCTGAATTTTGTCTAA
ATTTGTTGAATTCAACAAAATTAGTTCCCGCCAGAATTCTAAAATGTTTT
CAAGCAAGTAGCATTATATTCAAGGGGGGATGCTCGATTTTTGACATTAT
TCAGTTAGAATTGTCAAGCAGATAGTTTGAAGGAAGTGACCCTAGAAATT
TAGACCTCATGTATAGTTAGCAACAAAATGCCTTCATCTGACAAAATACA
GCAGATATTCCTATGAACTGCTCGTCGGACGCTTCTCTATATTGAATGTT
TGAGTCATTATAAATCCTGATTGACGACTTTCTTTAATTGTTTCTTTAAT
ATTTTTAGAAACTGAACAATCGCTTGAAGGCATTAAAGCATCTGAATGTA
GATGATGAAACAAGGAGTGCCATTTCTGGTATTCTTGTTCGTCCACTTAT
GTCCTCGGATGATGAAGAAATAGACGGAAACAAGAAGACATTTATTGTTC
GTAAACCATGTTGGAGGACCGAAGGTGTAACCAATTGCTTCCATACTCTT
GATGAGGCACGTCAGAGTAATCTGTCCAAACATTCTCTTTTCCGTCTCAT
GGATAGAAAAGATGGTCCACCCTCTGATAGGGAAGAACCGAAATGGTCGG
AGGAGATGGTGAAAGCCATCAAATTTTTTGATTGAATAATAGTCCAAATG
TTCCAGTCAGAATAGCATGAAAAACTAATATAGAAAATATTTGAAATCTA
GGAATACGAGGAAAATGAGGCTTATGACGTCATGACAATAATATTTGGAA
TTTAGCTATCTTAAATTCATTCTTATCAGTTTTTCATGCCCTTTCAACTG
GTATATTTTTTTAATTTTGAGCTTAAATATTTATTCTATCTATAATACCT
GGTCATGGCATTTTGTCACCTAAATTTTGCAACATAATATTAATCTTTAA
CAAAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005728XLOC_005728Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010209-exon-sc0000103-1575043694:341942..342285TCONS_00010209-exon-sc0000103-1575043694:341942..342285Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1575043694:341113..341186TCONS_00010209-exon-sc0000103-1575043694:341113..341186Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1575043694:340418..340509TCONS_00010209-exon-sc0000103-1575043694:340418..340509Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1575043694:340041..340144TCONS_00010209-exon-sc0000103-1575043694:340041..340144Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1575043694:338827..339427TCONS_00010209-exon-sc0000103-1575043694:338827..339427Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1510915933:341942..342285TCONS_00010209-exon-sc0000103-1510915933:341942..342285Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1510915933:341113..341186TCONS_00010209-exon-sc0000103-1510915933:341113..341186Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1510915933:340418..340509TCONS_00010209-exon-sc0000103-1510915933:340418..340509Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1510915933:340041..340144TCONS_00010209-exon-sc0000103-1510915933:340041..340144Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1510915933:338827..339427TCONS_00010209-exon-sc0000103-1510915933:338827..339427Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1491911889:341942..342285TCONS_00010209-exon-sc0000103-1491911889:341942..342285Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1491911889:341113..341186TCONS_00010209-exon-sc0000103-1491911889:341113..341186Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1491911889:340418..340509TCONS_00010209-exon-sc0000103-1491911889:340418..340509Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1491911889:340041..340144TCONS_00010209-exon-sc0000103-1491911889:340041..340144Clytia hemisphaericaexon
TCONS_00010209-exon-sc0000103-1491911889:338827..339427TCONS_00010209-exon-sc0000103-1491911889:338827..339427Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:338827..342285 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.946748	1.10489	0	0.117065	3.50633	2.5805	1.22931	1.03552	0.994995	1.73307	0	1.11441	0.364048	0.341007	0.691003	0.717967	0.767296	0.740796	0.0148081	0	0.750141	0.272575	0.544444	0.00467773	0.00451858	0.0675849	0	0.0516078	0.080441	0.130124
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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