TCONS_00010205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010205
Unique NameTCONS_00010205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010205 ID=TCONS_00010205|Name=TCONS_00010205|organism=Clytia hemisphaerica|type=transcript|length=847bp
CGCGCTTGCAGAAGAACACAAAACAGAAGGCAGGCAAAGAAGAATACGTT
CACTCTGTAAAAATGTTTGATAGTAACGATACAGTTTCAGgAGAACCTCT
ATCAACCATCGAAATATTAATAGAGGATGGAGAAAATAACGAAGAATCGG
AAGAAGCAGGACCATCTGAAAGAAAAGGAAAGAACAGTGCCAAGTACAAC
GGATTTAcaatgttttatcaaaagatttgTAATTCTATTGGTGAAAATGC
GAAAAAGGATAAACAAAAGGCACCATCTATAAAAGAGATGGCAAAAATTG
CAGCAGGCAAGTGGAGAGCACTTGACGATAATAGGAAAAAGgACTGGAAT
AGGAGCGCACAATTAGAAAGGGAGAACAGAGATTGCGATGTCAGCAGACT
CGAATGTGAACGCTGcaagaatattttttcaagagaAAAGGACAAACGAT
ACCACGAGCAGTTTTGTTACGAGGTAGAATGCCCTGAATGTCACAAAAAG
TTCAGAAAtggaattttgatgaaaaaacatttaaagacACATACAAAAAC
CTTTGAGTGTGCTGAGTGCTCCAAAAGATTTGGCATGAAGCAAAGTCTGG
ATAGGCACCTGCTCTCCCATGGAGCTAAATCATATGAATGCTTCTgtgga
aaaaaattcacaacaaAAGGAAATTATACTAGACATCAAAAGTCAATCCA
CTGATTGAATATTGAATAATGAATACCGAATAATGTGTCAGTATATACTG
TATTTATCAGTGAATGGATTTTAGGCGCAGTAGAAGATCTCCTTTATGTA
GATTGATTCTGGGAGTATTCATCAaatatgaaagaattttgtTGCAT
Run BLAST on NCBI

protein sequence of TCONS_00010205-protein

>TCONS_00010205-protein ID=TCONS_00010205-protein|Name=TCONS_00010205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
RLQKNTKQKAGKEEYVHSVKMFDSNDTVSGEPLSTIEILIEDGENNEESE
EAGPSERKGKNSAKYNGFTMFYQKICNSIGENAKKDKQKAPSIKEMAKIA
AGKWRALDDNRKKDWNRSAQLERENRDCDVSRLECERCKNIFSREKDKRY
HEQFCYEVECPECHKKFRNGILMKKHLKTHTKTFECAECSKRFGMKQSLD
RHLLSHGAKSYECFCGKKFTTKGNYTRHQKSIH
Run BLAST on NCBI

transcript from alignment at sc0000103:288988..290501-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010205 ID=TCONS_00010205|Name=TCONS_00010205|organism=Clytia hemisphaerica|type=transcript|length=1514bp|location=Sequence derived from alignment at sc0000103:288988..290501- (Clytia hemisphaerica)
CGCGCTTGCAGAAGAACACAAAACAGAAGGCAGGCAAAGAAGAATACGTT
CACTCTGTAAAAATGTTTGATAGTAACGATACAGTTTCAGGTAAGTTATT
TAAGAAGAATTTTTTTCTCACTCTGTCTTTTGATTAAAAGACAAACTTTA
GCTTTATAGAAATTATAGAAATAATCTTGTTTTGATCAATCAATGACCAT
GAACCTGAACCATCATATAGCTAAATAAATATATTCTCAACACGTTTTAT
ATATATATTTTTTTTACAGGAGAACCTCTATCAACCATCGAAATATTAAT
AGAGGATGGAGAAAATAACGAAGAATCGGAAGAAGCAGGACCATCTGAAA
GAAAAGGTAAACAGAAAAATAGGTCTGTTATAACTATAGTATTACTTTAT
TATTGATAAATATCTCCATCGAGACGACCATGAGACAACTCAAAGTAATC
AAAGATGAATTTCAAAACCACTATCATGAACACAGGTGAAGTTTCATCCT
ACATAACATTGTCTAATTTCACCTTTTTTTATTCCCCAGGAAAGAACAGT
GCCAAGTACAACGGATTTACAATGTTTTATCAAAAGATTTGTGTAAGTAA
AAAGCTCATTATATATCTAGCAACCACTATATTTCCTAATTTTCTATCAT
AAGAAGACAAAAACGAAGGAAAACATTCATTTATTTAACTAATTTTAATT
CTTTTTCTCAGAATTCTATTGGTGAAAATGCGAAAAAGGATAAACAAAAG
GCACCATCTATAAAAGAGATGGCAAAAATTGCAGCAGGCAAGTGGAGAGC
ACTTGACGATAATAGGAAAAAGGTAAGAGAAAAGACCCCTCCTTAAAATA
CTTGTAGTAATACTAGTAACTCGAAGTCCCTTTAACGCTTCTACACAGTG
ATACAAAGACTCAGCTGAATCATTTTTGATAATTTTTGATAATTTACCCA
TCAAAAACCAAGGGAACGTAAAGATTTTTGATTCAGTCATCTTTCTATTT
ATTTTTAGGACTGGAATAGGAGCGCACAATTAGAAAGGGAGAACAGAGAT
TGCGATGTCAGCAGACTCGAATGTGAACGCTGCAAGAATATTTTTTCAAG
AGAAAAGGACAAACGATACCACGAGCAGTTTTGTTACGAGGTAGAATGCC
CTGAATGTCACAAAAAGTTCAGAAATGGAATTTTGATGAAAAAACATTTA
AAGACACATACAAAAACCTTTGAGTGTGCTGAGTGCTCCAAAAGATTTGG
CATGAAGCAAAGTCTGGATAGGCACCTGCTCTCCCATGGAGCTAAATCAT
ATGAATGCTTCTGTGGAAAAAAATTCACAACAAAAGGAAATTATACTAGA
CATCAAAAGTCAATCCACTGATTGAATATTGAATAATGAATACCGAATAA
TGTGTCAGTATATACTGTATTTATCAGTGAATGGATTTTAGGCGCAGTAG
AAGATCTCCTTTATGTAGATTGATTCTGGGAGTATTCATCAAATATGAAA
GAATTTTGTTGCAT

Coding sequence (CDS) from alignment at sc0000103:288988..290501-

>TCONS_00010205 ID=TCONS_00010205|Name=TCONS_00010205|organism=Clytia hemisphaerica|type=CDS|length=3510bp|location=Sequence derived from alignment at sc0000103:288988..290501- (Clytia hemisphaerica)
GACTGGAATAGGAGCGCACAATTAGAAAGGGAGAACAGAGATTGCGATGT
CAGCAGACTCGAATGTGAACGCTGCAAGAATATTTTTTCAAGAGAAAAGG
ACAAACGATACCACGAGCAGTTTTGTTACGAGGTAGAATGCCCTGAATGT
CACAAAAAGTTCAGAAATGGAATTTTGATGAAAAAACATTTAAAGACACA
TACAAAAACCTTTGAGTGTGCTGAGTGCTCCAAAAGATTTGGCATGAAGC
AAAGTCTGGATAGGCACCTGCTCTCCCATGGAGCTAAATCATATGAATGC
TTCTGTGGAAAAAAATTCACAACAAAAGGAAATTATACTAGACATCAAAA
GTCAATCCACTGAAATTCTATTGGTGAAAATGCGAAAAAGGATAAACAAA
AGGCACCATCTATAAAAGAGATGGCAAAAATTGCAGCAGGCAAGTGGAGA
GCACTTGACGATAATAGGAAAAAGGAAAGAACAGTGCCAAGTACAACGGA
TTTACAATGTTTTATCAAAAGATTTGTGAGAACCTCTATCAACCATCGAA
ATATTAATAGAGGATGGAGAAAATAACGAAGAATCGGAAGAAGCAGGACC
ATCTGAAAGAAAAGCGCTTGCAGAAGAACACAAAACAGAAGGCAGGCAAA
GAAGAATACGTTCACTCTGTAAAAATGTTTGATAGTAACGATACAGTTTC
AGGACTGGAATAGGAGCGCACAATTAGAAAGGGAGAACAGAGATTGCGAT
GTCAGCAGACTCGAATGTGAACGCTGCAAGAATATTTTTTCAAGAGAAAA
GGACAAACGATACCACGAGCAGTTTTGTTACGAGGTAGAATGCCCTGAAT
GTCACAAAAAGTTCAGAAATGGAATTTTGATGAAAAAACATTTAAAGACA
CATACAAAAACCTTTGAGTGTGCTGAGTGCTCCAAAAGATTTGGCATGAA
GCAAAGTCTGGATAGGCACCTGCTCTCCCATGGAGCTAAATCATATGAAT
GCTTCTGTGGAAAAAAATTCACAACAAAAGGAAATTATACTAGACATCAA
AAGTCAATCCACTGAAATTCTATTGGTGAAAATGCGAAAAAGGATAAACA
AAAGGCACCATCTATAAAAGAGATGGCAAAAATTGCAGCAGGCAAGTGGA
GAGCACTTGACGATAATAGGAAAAAGGAAAGAACAGTGCCAAGTACAACG
GATTTACAATGTTTTATCAAAAGATTTGTGAGAACCTCTATCAACCATCG
AAATATTAATAGAGGATGGAGAAAATAACGAAGAATCGGAAGAAGCAGGA
CCATCTGAAAGAAAAGCGCTTGCAGAAGAACACAAAACAGAAGGCAGGCA
AAGAAGAATACGTTCACTCTGTAAAAATGTTTGATAGTAACGATACAGTT
TCAGGACTGGAATAGGAGCGCACAATTAGAAAGGGAGAACAGAGATTGCG
ATGTCAGCAGACTCGAATGTGAACGCTGCAAGAATATTTTTTCAAGAGAA
AAGGACAAACGATACCACGAGCAGTTTTGTTACGAGGTAGAATGCCCTGA
ATGTCACAAAAAGTTCAGAAATGGAATTTTGATGAAAAAACATTTAAAGA
CACATACAAAAACCTTTGAGTGTGCTGAGTGCTCCAAAAGATTTGGCATG
AAGCAAAGTCTGGATAGGCACCTGCTCTCCCATGGAGCTAAATCATATGA
ATGCTTCTGTGGAAAAAAATTCACAACAAAAGGAAATTATACTAGACATC
AAAAGTCAATCCACTGAAATTCTATTGGTGAAAATGCGAAAAAGGATAAA
CAAAAGGCACCATCTATAAAAGAGATGGCAAAAATTGCAGCAGGCAAGTG
GAGAGCACTTGACGATAATAGGAAAAAGGAAAGAACAGTGCCAAGTACAA
CGGATTTACAATGTTTTATCAAAAGATTTGTGAGAACCTCTATCAACCAT
CGAAATATTAATAGAGGATGGAGAAAATAACGAAGAATCGGAAGAAGCAG
GACCATCTGAAAGAAAAGCGCTTGCAGAAGAACACAAAACAGAAGGCAGG
CAAAGAAGAATACGTTCACTCTGTAAAAATGTTTGATAGTAACGATACAG
TTTCAGGACTGGAATAGGAGCGCACAATTAGAAAGGGAGAACAGAGATTG
CGATGTCAGCAGACTCGAATGTGAACGCTGCAAGAATATTTTTTCAAGAG
AAAAGGACAAACGATACCACGAGCAGTTTTGTTACGAGGTAGAATGCCCT
GAATGTCACAAAAAGTTCAGAAATGGAATTTTGATGAAAAAACATTTAAA
GACACATACAAAAACCTTTGAGTGTGCTGAGTGCTCCAAAAGATTTGGCA
TGAAGCAAAGTCTGGATAGGCACCTGCTCTCCCATGGAGCTAAATCATAT
GAATGCTTCTGTGGAAAAAAATTCACAACAAAAGGAAATTATACTAGACA
TCAAAAGTCAATCCACTGAAATTCTATTGGTGAAAATGCGAAAAAGGATA
AACAAAAGGCACCATCTATAAAAGAGATGGCAAAAATTGCAGCAGGCAAG
TGGAGAGCACTTGACGATAATAGGAAAAAGGAAAGAACAGTGCCAAGTAC
AACGGATTTACAATGTTTTATCAAAAGATTTGTGAGAACCTCTATCAACC
ATCGAAATATTAATAGAGGATGGAGAAAATAACGAAGAATCGGAAGAAGC
AGGACCATCTGAAAGAAAAGCGCTTGCAGAAGAACACAAAACAGAAGGCA
GGCAAAGAAGAATACGTTCACTCTGTAAAAATGTTTGATAGTAACGATAC
AGTTTCAGGACTGGAATAGGAGCGCACAATTAGAAAGGGAGAACAGAGAT
TGCGATGTCAGCAGACTCGAATGTGAACGCTGCAAGAATATTTTTTCAAG
AGAAAAGGACAAACGATACCACGAGCAGTTTTGTTACGAGGTAGAATGCC
CTGAATGTCACAAAAAGTTCAGAAATGGAATTTTGATGAAAAAACATTTA
AAGACACATACAAAAACCTTTGAGTGTGCTGAGTGCTCCAAAAGATTTGG
CATGAAGCAAAGTCTGGATAGGCACCTGCTCTCCCATGGAGCTAAATCAT
ATGAATGCTTCTGTGGAAAAAAATTCACAACAAAAGGAAATTATACTAGA
CATCAAAAGTCAATCCACTGAAATTCTATTGGTGAAAATGCGAAAAAGGA
TAAACAAAAGGCACCATCTATAAAAGAGATGGCAAAAATTGCAGCAGGCA
AGTGGAGAGCACTTGACGATAATAGGAAAAAGGAAAGAACAGTGCCAAGT
ACAACGGATTTACAATGTTTTATCAAAAGATTTGTGAGAACCTCTATCAA
CCATCGAAATATTAATAGAGGATGGAGAAAATAACGAAGAATCGGAAGAA
GCAGGACCATCTGAAAGAAAAGCGCTTGCAGAAGAACACAAAACAGAAGG
CAGGCAAAGAAGAATACGTTCACTCTGTAAAAATGTTTGATAGTAACGAT
ACAGTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005726XLOC_005726Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010205-exon-sc0000103-1575043694:290412..290501TCONS_00010205-exon-sc0000103-1575043694:290412..290501Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1575043694:290146..290232TCONS_00010205-exon-sc0000103-1575043694:290146..290232Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1575043694:289910..289962TCONS_00010205-exon-sc0000103-1575043694:289910..289962Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1575043694:289680..289790TCONS_00010205-exon-sc0000103-1575043694:289680..289790Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1575043694:288988..289493TCONS_00010205-exon-sc0000103-1575043694:288988..289493Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1510915933:290412..290501TCONS_00010205-exon-sc0000103-1510915933:290412..290501Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1510915933:290146..290232TCONS_00010205-exon-sc0000103-1510915933:290146..290232Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1510915933:289910..289962TCONS_00010205-exon-sc0000103-1510915933:289910..289962Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1510915933:289680..289790TCONS_00010205-exon-sc0000103-1510915933:289680..289790Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1510915933:288988..289493TCONS_00010205-exon-sc0000103-1510915933:288988..289493Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1491911889:290412..290501TCONS_00010205-exon-sc0000103-1491911889:290412..290501Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1491911889:290146..290232TCONS_00010205-exon-sc0000103-1491911889:290146..290232Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1491911889:289910..289962TCONS_00010205-exon-sc0000103-1491911889:289910..289962Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1491911889:289680..289790TCONS_00010205-exon-sc0000103-1491911889:289680..289790Clytia hemisphaericaexon
TCONS_00010205-exon-sc0000103-1491911889:288988..289493TCONS_00010205-exon-sc0000103-1491911889:288988..289493Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010205-proteinTCONS_00010205-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:288988..290501 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0556077	0	0.188886	0.0615984	0.449941	0.237033	0.714925	0.803165	1.78066	1.50912	0.788733	0.851792	0.480779	0.768143	1.19988	1.08435	1.04361	0.513442	0.472898	0.927851	1.07529	1.02276	0.191276	0.231864	0	0.053284	0.152499	0.0813753	0.246881	0.0628832
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR009071HMG_box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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