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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010203 ID=TCONS_00010203|Name=TCONS_00010203|organism=Clytia hemisphaerica|type=transcript|length=1433bp
CAAAAAAATGCGAGCGTGTTTATTGGTCAAGAGCATTGACATAAATGCAA
TATTTCATATTTATGCTGTTGCATTAAGAAGAACTCTGCGATACACACAC
CAACACTTTCTACTCATAGCAGTGGTCTGATCGGATACATTTTTTCCGGA
CACGCTGTAGAGAATAATTGACTTTCCAATTTAGAGAATTGAAGCATTTT
GGTCTCAATTGAAGCGGTCACTGACTCAATGGTGGATGAACTTTTTTAAG
GACATGATTGACGATGGAACATTTGATGAATCTGATGAAATTCAAAGgga
atgtttaaaattttgttttctccaACTGATTCAAAAAGAGTTAGATGATT
TCAAACTAATACACAACACTCACAGGATTAGAAGAAGTAACACAAACGAA
ACAACTGGTGGAAAGCCGGAACTTTTGTACAGCATGCCAAATTATTTCGG
TAAGCTGTAACATTTGGTTACATTCGGTACTTAAGTCCATCGAAAAACTA
TGTGGAAACTTCACATTTAATGTTGTAGCTCCTTCAAGTGGGTCTAATTG
CCTATTTTTTGGCCATTTAGGCCTACTTTGTAGCGCTGTAATTTATCACT
TGCAAAACATAAACAGGTAGAAAACGGAGGTGCACACTATGGCAGGAATA
CCTTACgagttttaaaagctctatgtTATAATCTATGATTGGCTATTCGC
AATTCAGGTGCCACCGACTTTATGTGGAATGTTCGTGAAGCTGAAATAAA
TGTTGCTGAAGCGTATTGTCGTACACCGAACGTTTTTGGTTGTGGAAACG
AAATTGAAACTGTTGGCTTATATTTTATGAATGAAAATAACTTGAGATTT
CCAAGCTCATTTCAAGAAGCCAAAAGACTTTATGGCCTTCTGCTCCGATT
CATTAATGGTTTGGAAAACGCATATCATTTTTAACATTGTCCAATCTGAA
GTTCAATTagaaactttttaaactttttaaaatatatatttttattgaaC
TTTTTCTCCTCCTAAGAAATTTTATTATGCATGTCTTGTTACTACTGtat
aaaaatatagaaattatCTAGAAATTTCAATACTTTTTCATAATGATATT
TTCATGTAGAAAAGGTTATGGCGTGACGGCCTCTTTAAGCTCGTACAAAA
AGATCATATAATTTTCCCCTagttttttgatgtaaaaataaacttcaaag
attttttctccGTATTCTGGAAACTGTCTTTTCTATCATAATATTAATTT
CTATGTTTTAGGCTTGCTAGTTTACTATTGTGTTTATATGAATATTTGCT
GTTCTATAAATCTTTCCAGGTATTCGaaagtgtttattttttatggtatt
aaattttgtaattttagccaagaaaaatcttttgttttaaagaccTTCAT
TTCACAGAAAATCTATATTCATTATATGCATAG Run BLAST on NCBI transcript from alignment at sc0000103:270003..272161- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010203 ID=TCONS_00010203|Name=TCONS_00010203|organism=Clytia hemisphaerica|type=transcript|length=2159bp|location=Sequence derived from alignment at sc0000103:270003..272161- (Clytia hemisphaerica)
CAAAAAAATGCGAGCGTGTTTATTGGTCAAGAGCATTGACATAAATGCAA
TATTTCATATTTATGCTGTTGCATTAAGAAGAACTCTGCGATACACACAC
CAACACTTTCTACTCATAGCAGTGGTCTGATCGGATACATTTTTTCCGGA
CACGCTGTAGAGAATAATTGACTTTCCAATTTAGAGAATTGAAGCATTTT
GGTCTCAATTGAAGCGGTCACTGACTCAATGGTGGATGAACTTTTTTAAG
GTAATTTATTCCCTCATTGTTTCCCAACAACCCAGATAATTTTGGCTGAA
ATCTTTTGTAATTTATTCTTGCATTAGTACCTGGTAGAGTTTCTTCTGAC
TTTAAATCCTGAAATTGACAGAATTGCTTTTTGTGGGGATAATTTTTTTA
AGAGATACCAAAATCGAGCCAGTTCGATGAACAAGGTTGACAGTTTTGAC
CAATCATACTGCAGCTGTTTTTTATTACATGTATATGAATTTTCCAGGAC
ATGATTGACGATGGAACATTTGATGAATCTGATGAAATTCAAAGGTACGC
GAGAATATAAATTATTGTCAATAGAAAAACAATAGAAAATGGATTCAATT
TAATGGATTTAATTTTTGAAAAATGAAAGCTCTGCTCGCCCTCTCTCTGA
ATGAATTGAATGAATTCTAACCGGTGAAGAGTTTTGACCTAAATTCAATG
GACTTTGATTTCTGACCAAAAATTATGACCAGACCAGCAATAGCGAGTGG
CCACGGATTTGAAAAGTGAAATTAAAATGTAACATTTAAAAGAAAATGAG
ATCCAGATAAACTGAATTGACCCCCACGCGAACTTTTTTAAATCATTTTC
AAGTCTTTTGAATTGTTATAATTCTAAAAATGTTTGCATTTAAAAGAGCA
ATTTTACACAAATAACGATTTTAAAAATATAAATTACATTCCGCCAATAG
TACTTGTTATCTACCGTAACGCTCTCCTGTTCTCCTTTTAAGTAAAATTA
ATGGTACAATTATTTATTTTTAGGGAATGTTTAAAATTTTGTTTTCTCCA
ACTGATTCAAAAAGAGTTAGATGATTTCAAACTAATACACAACACTCACA
GGATTAGAAGAAGTAACACAAACGAAACAACTGGTGGAAAGCCGGAACTT
TTGTACAGCATGCCAAATTATTTCGGTAAGCTGTAACATTTGGTTACATT
CGGTACTTAAGTCCATCGAAAAACTATGTGGAAACTTCACATTTAATGTT
GTAGCTCCTTCAAGTGGGTCTAATTGCCTATTTTTTGGCCATTTAGGCCT
ACTTTGTAGCGCTGTAATTTATCACTTGCAAAACATAAACAGGTAGAAAA
CGGAGGTGCACACTATGGCAGGAATACCTTACGAGTTTTAAAAGCTCTAT
GTTATAATCTATGATTGGCTATTCGCAATTCAGGTGCCACCGACTTTATG
TGGAATGTTCGTGAAGCTGAAATAAATGTTGCTGAAGCGTATTGTCGTAC
ACCGAACGTTTTTGGTTGTGGAAACGAAATTGAAACTGTTGGCTTATATT
TTATGAATGAAAATAACTTGAGATTTCCAAGCTCATTTCAAGAAGCCAAA
AGACTTTATGGCCTTCTGCTCCGATTCATTAATGGTTTGGAAAACGCATA
TCATTTTTAACATTGTCCAATCTGAAGTTCAATTAGAAACTTTTTAAACT
TTTTAAAATATATATTTTTATTGAACTTTTTCTCCTCCTAAGAAATTTTA
TTATGCATGTCTTGTTACTACTGTATAAAAATATAGAAATTATCTAGAAA
TTTCAATACTTTTTCATAATGATATTTTCATGTAGAAAAGGTTATGGCGT
GACGGCCTCTTTAAGCTCGTACAAAAAGATCATATAATTTTCCCCTAGTT
TTTTGATGTAAAAATAAACTTCAAAGATTTTTTCTCCGTATTCTGGAAAC
TGTCTTTTCTATCATAATATTAATTTCTATGTTTTAGGCTTGCTAGTTTA
CTATTGTGTTTATATGAATATTTGCTGTTCTATAAATCTTTCCAGGTATT
CGAAAGTGTTTATTTTTTATGGTATTAAATTTTGTAATTTTAGCCAAGAA
AAATCTTTTGTTTTAAAGACCTTCATTTCACAGAAAATCTATATTCATTA
TATGCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010203-exon-sc0000103-1575043694:271912..272161 | TCONS_00010203-exon-sc0000103-1575043694:271912..272161 | Clytia hemisphaerica | exon |
| TCONS_00010203-exon-sc0000103-1575043694:271618..271664 | TCONS_00010203-exon-sc0000103-1575043694:271618..271664 | Clytia hemisphaerica | exon |
| TCONS_00010203-exon-sc0000103-1575043694:270003..271138 | TCONS_00010203-exon-sc0000103-1575043694:270003..271138 | Clytia hemisphaerica | exon |
| TCONS_00010203-exon-sc0000103-1510915933:271912..272161 | TCONS_00010203-exon-sc0000103-1510915933:271912..272161 | Clytia hemisphaerica | exon |
| TCONS_00010203-exon-sc0000103-1510915933:271618..271664 | TCONS_00010203-exon-sc0000103-1510915933:271618..271664 | Clytia hemisphaerica | exon |
| TCONS_00010203-exon-sc0000103-1510915933:270003..271138 | TCONS_00010203-exon-sc0000103-1510915933:270003..271138 | Clytia hemisphaerica | exon |
| TCONS_00010203-exon-sc0000103-1491911889:271912..272161 | TCONS_00010203-exon-sc0000103-1491911889:271912..272161 | Clytia hemisphaerica | exon |
| TCONS_00010203-exon-sc0000103-1491911889:271618..271664 | TCONS_00010203-exon-sc0000103-1491911889:271618..271664 | Clytia hemisphaerica | exon |
| TCONS_00010203-exon-sc0000103-1491911889:270003..271138 | TCONS_00010203-exon-sc0000103-1491911889:270003..271138 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:270003..272161 - |
Blast
The following BLAST results are available for this feature:
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