|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010195 ID=TCONS_00010195|Name=TCONS_00010195|organism=Clytia hemisphaerica|type=transcript|length=1226bp
atttgaaaatgctgtttGATAGTCGGTGGCCGTCGTTTTTGATtcacaaa
ttgaaaaaagaaaatgatggTCGTTCTTGACCGATAAAGTGTTTGACGTT
GAAAACATTCGTGTGGATAAAGTGACCGAGAATGGACATCTTGGATCGCG
GTCATTTTGAGACGACTCATTTTGACAAACCAGGAGAAAGCAACACCAAA
GCACAACATGCCAGCCTTCTCGAAACCGTCCTCAAGCAACACGAAGAACA
TGAGGTCGAACAAAGAATATTTTCCAACAgaaaagatgaagatgaagatg
aaatttCGCTGCCCGATCAAACTCTTGATTCCAATCTAACGGACCAATCA
AATGACATCATTACGTCAGATTCAACCAATGAGAGTTGTTCAAGTAACCC
ATCTGACCAATCAATGGACAGCATTCAATCAACGGTGACGGAGAAGGTTG
AGGAGGTTTTACCTACCATTGACAAACTAAAATGTTTGAAACCTTTGACA
TCAGAGTATAATGAAGATCGGTTTCTTTCGAAGCCAGAGAAAGTGCGAAG
AATTATCAGCACCGTTTTCAAAGAGTTCTTCCAAAaccacaaaaagtatg
attatCGTTACATAAAAAGTCACATGGGTTTAATCTCTGATCTGATCATG
AAACGGGTCAAAACCTTGTACGACATTTCACGGACCAGACTGGTCTGCAT
TTTACACGTTTTTGAAACGAGTGGACAGCAGATCGAACAAGCAAGCCGAT
GTTGTTGGGATACTAATTCAGATAATTTTACAGACTTTGTTTTGAGGATG
GATTTCTTCACGGCAACTTGCGTCATTTACGCTTTGTATACAGAATAGGC
CATCTTGTAGTCGTGATGAGTCGTAGAGCTTAAGACACTGGTTTTACGCA
GGAATTCCTGGTTGGTCATGTGCAAAGATGTAATAAAGCCTTATAGGAGG
CAAGAAGATCTCGCTTGAACGCATCAGTAAGACTATTATAACTccttaat
ttgaaaaatttatttatattgcaTACACACGTGGGTGCTTCAGAGAAAAG
AGCTTTTAGGAAAAAAGACCACCGGTTGATGATTTTTtagaacacccctg
tgtcacagaaccGCTGGAACCCTAACCAgtccagctgacacacaacgttg
tttcaacgtttatctaatgttcacaacgtccatttaacgttagatgaacg
ttgaaacaacgttgtgtgccagctgg Run BLAST on NCBI protein sequence of TCONS_00010195-protein >TCONS_00010195-protein ID=TCONS_00010195-protein|Name=TCONS_00010195-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MDILDRGHFETTHFDKPGESNTKAQHASLLETVLKQHEEHEVEQRIFSNR
KDEDEDEISLPDQTLDSNLTDQSNDIITSDSTNESCSSNPSDQSMDSIQS
TVTEKVEEVLPTIDKLKCLKPLTSEYNEDRFLSKPEKVRRIISTVFKEFF
QNHKKYDYRYIKSHMGLISDLIMKRVKTLYDISRTRLVCILHVFETSGQQ
IEQASRCCWDTNSDNFTDFVLRMDFFTATCVIYALYTE Run BLAST on NCBI transcript from alignment at sc0000103:155104..157461- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010195 ID=TCONS_00010195|Name=TCONS_00010195|organism=Clytia hemisphaerica|type=transcript|length=2358bp|location=Sequence derived from alignment at sc0000103:155104..157461- (Clytia hemisphaerica)
ATTTGAAAATGCTGTTTGATAGTCGGTGGCCGTCGTTTTTGATTCACAAA
TTGAAAAAAGAAAATGATGGTCGTTCTTGACCGATAAAGTGTTTGACGTT
GAAAACATTCGTGTGGATAAAGTGACCGAGAATGGACATCTTGGATCGCG
GTCATTTTGAGGTAATGTAGACCACTTTTCCTCCCTTTCACAAATAATAT
CAACCATTGTAGCAACCCCTTCTCACAAACCCACTGGGACTCCTTCTCAT
TAGAAAAAATGTCCAAAATATCGTCTCCGGTGGAAAATTATCCTCCAATT
TTTGTCGCCACTGAAAATAATTAGATAAGGAAATCCTCACTGCAAAATAT
TTTGCTATGTTTTCCATCACCACTGAATTTTCTGACTTTGAAACAAAAGA
ATTGAAGTCCCAAGCCATAAAAAATATGAGAATATCAATCCCCATCGAGT
TTCAGTCCGTTATTTTTATCCCCGCTGGCTAGAGATAAAATGCTACCGGA
TCTATGAGAAGGGGGTGTATTGTAGCATCCATTCATAAATTTTTTCGATG
TGCTTTGATAAAAGGCGAGGTCTTTTACCTAAGTGTAGTTGAAAAACCCA
ATGAAATAGAACCTTTTCGATTCATTGTTAAAGTGTAAGGTTTATTTCGA
TCATACACGTATATCCTAAGCTCTATATTTCTTTGTTATCAGAGAGACAG
TTCTCCTTGTCCCCGCGACACTATATCGATCAAACATTTGTATCCTCAAA
CTCGATATTTCTTTAGACGACTCATTTTGACAAACCAGGAGAAAGCAACA
CCAAAGCACAACATGCCAGCCTTCTCGAAACCGTCCTCAAGCAACACGAA
GAACATGAGGTCGAACAAAGAATATTTTCCAACAGAAAAGATGAAGATGA
AGATGAAATTTCGCTGCCCGATCAAACTCTTGATTCCAATCTAACGGACC
AATCAAATGACATCATTACGTCAGATTCAACCAATGAGAGTTGTTCAAGT
AACCCATCTGACCAATCAATGGACAGCATTCAATCAACGGTGACGGAGAA
GGTTGAGGAGGTTTTACCTACCATTGACAAACTAAAATGTTTGAAACCTT
TGACATCAGAGTATAATGAAGATCGGTTTCTTTCGAAGGTAATACATTGC
ATTTCTACAATCATATTCAAAATCTATTGAGAATTAAGGTTATTTCCTCG
TTTTCGGAAATTTGGAGTTCGGGTGAGAAAGTCAATTTTGGGCCATCTCT
TAAATTTAATCGGATATTTCAATTTGGCACGGGTTTATAGACCTCTACCC
TTCTACCGCTAAGTTAGAGCGCTTCCACATCGTTTGTGGCTATAAGATTT
CGTAGAAATTTCCCTTTTTTCTCAAATATTACGACCATGATTGGAAAAGT
CGTCAAATATTTACGTGTTAATATGTATATATGCGAAGAGAGAGTAGCAA
CGTCAAACAGGAACACGAGAAAGACACAACCCTCTCATTAAAAATATCTG
AAAGTATTTCAAACCAATAAATGGTGTTGTGTGGAAATCTTTCGTGGTCA
TCAACCGAATTAGCCACAATAATTTCAATGAATTCTGCAAAATCAGCATA
TGCTGTCTACACCCAAAAATTGGAGTTGCTTATAAAAAAATGTGTATCTC
TGTTTCATCTTTCAGCCAGAGAAAGTGCGAAGAATTATCAGCACCGTTTT
CAAAGAGTTCTTCCAAAACCACAAAAAGTATGATTATCGTTACATAAAAA
GTCACATGGGTTTAATCTCTGATCTGATCATGAAACGGGTCAAAACCTTG
TACGACATTTCACGGACCAGACTGGTCTGCATTTTACACGTTTTTGAAAC
GAGTGGACAGCAGATCGAACAAGCAAGCCGATGTTGTTGGGATACTAATT
CAGATAATTTTACAGACTTTGTTTTGAGGATGGATTTCTTCACGGCAACT
TGCGTCATTTACGCTTTGTATACAGAATAGGCCATCTTGTAGTCGTGATG
AGTCGTAGAGCTTAAGACACTGGTTTTACGCAGGAATTCCTGGTTGGTCA
TGTGCAAAGATGTAATAAAGCCTTATAGGAGGCAAGAAGATCTCGCTTGA
ACGCATCAGTAAGACTATTATAACTCCTTAATTTGAAAAATTTATTTATA
TTGCATACACACGTGGGTGCTTCAGAGAAAAGAGCTTTTAGGAAAAAAGA
CCACCGGTTGATGATTTTTTAGAACACCCCTGTGTCACAGAACCGCTGGA
ACCCTAACCAGTCCAGCTGACACACAACGTTGTTTCAACGTTTATCTAAT
GTTCACAACGTCCATTTAACGTTAGATGAACGTTGAAACAACGTTGTGTG
CCAGCTGG Coding sequence (CDS) from alignment at sc0000103:155104..157461- >TCONS_00010195 ID=TCONS_00010195|Name=TCONS_00010195|organism=Clytia hemisphaerica|type=CDS|length=2151bp|location=Sequence derived from alignment at sc0000103:155104..157461- (Clytia hemisphaerica)
CCAGAGAAAGTGCGAAGAATTATCAGCACCGTTTTCAAAGAGTTCTTCCA
AAACCACAAAAAGTATGATTATCGTTACATAAAAAGTCACATGGGTTTAA
TCTCTGATCTGATCATGAAACGGGTCAAAACCTTGTACGACATTTCACGG
ACCAGACTGGTCTGCATTTTACACGTTTTTGAAACGAGTGGACAGCAGAT
CGAACAAGCAAGCCGATGTTGTTGGGATACTAATTCAGATAATTTTACAG
ACTTTGTTTTGAGGATGGATTTCTTCACGGCAACTTGCGTCATTTACGCT
TTGTATACAGAATAGACGACTCATTTTGACAAACCAGGAGAAAGCAACAC
CAAAGCACAACATGCCAGCCTTCTCGAAACCGTCCTCAAGCAACACGAAG
AACATGAGGTCGAACAAAGAATATTTTCCAACAGAAAAGATGAAGATGAA
GATGAAATTTCGCTGCCCGATCAAACTCTTGATTCCAATCTAACGGACCA
ATCAAATGACATCATTACGTCAGATTCAACCAATGAGAGTTGTTCAAGTA
ACCCATCTGACCAATCAATGGACAGCATTCAATCAACGGTGACGGAGAAG
GTTGAGGAGGTTTTACCTACCATTGACAAACTAAAATGTTTGAAACCTTT
GACATCAGAGTATAATGAAGATCGGTTTCTTTCGAAGATGGACATCTTGG
ATCGCGGTCATTTTGAGCCAGAGAAAGTGCGAAGAATTATCAGCACCGTT
TTCAAAGAGTTCTTCCAAAACCACAAAAAGTATGATTATCGTTACATAAA
AAGTCACATGGGTTTAATCTCTGATCTGATCATGAAACGGGTCAAAACCT
TGTACGACATTTCACGGACCAGACTGGTCTGCATTTTACACGTTTTTGAA
ACGAGTGGACAGCAGATCGAACAAGCAAGCCGATGTTGTTGGGATACTAA
TTCAGATAATTTTACAGACTTTGTTTTGAGGATGGATTTCTTCACGGCAA
CTTGCGTCATTTACGCTTTGTATACAGAATAGACGACTCATTTTGACAAA
CCAGGAGAAAGCAACACCAAAGCACAACATGCCAGCCTTCTCGAAACCGT
CCTCAAGCAACACGAAGAACATGAGGTCGAACAAAGAATATTTTCCAACA
GAAAAGATGAAGATGAAGATGAAATTTCGCTGCCCGATCAAACTCTTGAT
TCCAATCTAACGGACCAATCAAATGACATCATTACGTCAGATTCAACCAA
TGAGAGTTGTTCAAGTAACCCATCTGACCAATCAATGGACAGCATTCAAT
CAACGGTGACGGAGAAGGTTGAGGAGGTTTTACCTACCATTGACAAACTA
AAATGTTTGAAACCTTTGACATCAGAGTATAATGAAGATCGGTTTCTTTC
GAAGATGGACATCTTGGATCGCGGTCATTTTGAGCCAGAGAAAGTGCGAA
GAATTATCAGCACCGTTTTCAAAGAGTTCTTCCAAAACCACAAAAAGTAT
GATTATCGTTACATAAAAAGTCACATGGGTTTAATCTCTGATCTGATCAT
GAAACGGGTCAAAACCTTGTACGACATTTCACGGACCAGACTGGTCTGCA
TTTTACACGTTTTTGAAACGAGTGGACAGCAGATCGAACAAGCAAGCCGA
TGTTGTTGGGATACTAATTCAGATAATTTTACAGACTTTGTTTTGAGGAT
GGATTTCTTCACGGCAACTTGCGTCATTTACGCTTTGTATACAGAATAGA
CGACTCATTTTGACAAACCAGGAGAAAGCAACACCAAAGCACAACATGCC
AGCCTTCTCGAAACCGTCCTCAAGCAACACGAAGAACATGAGGTCGAACA
AAGAATATTTTCCAACAGAAAAGATGAAGATGAAGATGAAATTTCGCTGC
CCGATCAAACTCTTGATTCCAATCTAACGGACCAATCAAATGACATCATT
ACGTCAGATTCAACCAATGAGAGTTGTTCAAGTAACCCATCTGACCAATC
AATGGACAGCATTCAATCAACGGTGACGGAGAAGGTTGAGGAGGTTTTAC
CTACCATTGACAAACTAAAATGTTTGAAACCTTTGACATCAGAGTATAAT
GAAGATCGGTTTCTTTCGAAGATGGACATCTTGGATCGCGGTCATTTTGA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010195-exon-sc0000103-1575043694:157301..157461 | TCONS_00010195-exon-sc0000103-1575043694:157301..157461 | Clytia hemisphaerica | exon |
| TCONS_00010195-exon-sc0000103-1575043694:156324..156695 | TCONS_00010195-exon-sc0000103-1575043694:156324..156695 | Clytia hemisphaerica | exon |
| TCONS_00010195-exon-sc0000103-1575043694:155104..155796 | TCONS_00010195-exon-sc0000103-1575043694:155104..155796 | Clytia hemisphaerica | exon |
| TCONS_00010195-exon-sc0000103-1510915933:157301..157461 | TCONS_00010195-exon-sc0000103-1510915933:157301..157461 | Clytia hemisphaerica | exon |
| TCONS_00010195-exon-sc0000103-1510915933:156324..156695 | TCONS_00010195-exon-sc0000103-1510915933:156324..156695 | Clytia hemisphaerica | exon |
| TCONS_00010195-exon-sc0000103-1510915933:155104..155796 | TCONS_00010195-exon-sc0000103-1510915933:155104..155796 | Clytia hemisphaerica | exon |
| TCONS_00010195-exon-sc0000103-1491911889:157301..157461 | TCONS_00010195-exon-sc0000103-1491911889:157301..157461 | Clytia hemisphaerica | exon |
| TCONS_00010195-exon-sc0000103-1491911889:156324..156695 | TCONS_00010195-exon-sc0000103-1491911889:156324..156695 | Clytia hemisphaerica | exon |
| TCONS_00010195-exon-sc0000103-1491911889:155104..155796 | TCONS_00010195-exon-sc0000103-1491911889:155104..155796 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:155104..157461 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005334 | Tctex |
Blast
The following BLAST results are available for this feature:
|
