TCONS_00010191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010191
Unique NameTCONS_00010191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010191 ID=TCONS_00010191|Name=TCONS_00010191|organism=Clytia hemisphaerica|type=transcript|length=483bp
aGTTAGAGTCCAACATGCTCATGATCAATAACAACAACCATGATAGTAAA
AATAAGATGATGGAAGGGTGCGGTGACTTGATGTTGATGAAGAATGTGGA
GAATGAAGGAGATGACATCAATGTAGATACTCTCTCATCTGATGATGAAG
TGGACATCGAATCATCGTTTAACTTCCAACTATTTCGTGAAAAAAATCTG
CCATCTACCATACCCAACTCTGATGGAGTTCCCTTGCAGCGATATCTGAC
AGTGCGCGCAACATCAAATGATGATTCTAGTTCTTCAAGAGGCTCAAGTC
CTTCACTTTCTTCTATCAAAGCATCCAGTAATGTCCCCAGGAAGGATGAA
GAGCAGTTGACGAAACACAATCAAATGGAAAGACAACGTCGCCGACAGAT
GAGCGGCATGTTTGTGGAATTGCGACAACTTGTTATTGATGAAGATACTG
TGGAAGGGGACGGTAGCAGGGATTACCTCAAGG
Run BLAST on NCBI

protein sequence of TCONS_00010191-protein

>TCONS_00010191-protein ID=TCONS_00010191-protein|Name=TCONS_00010191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
LESNMLMINNNNHDSKNKMMEGCGDLMLMKNVENEGDDINVDTLSSDDEV
DIESSFNFQLFREKNLPSTIPNSDGVPLQRYLTVRATSNDDSSSSRGSSP
SLSSIKASSNVPRKDEEQLTKHNQMERQRRRQMSGMFVELRQLVIDEDTV
EGDGSRDYLK
Run BLAST on NCBI

transcript from alignment at sc0000103:101064..103693-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010191 ID=TCONS_00010191|Name=TCONS_00010191|organism=Clytia hemisphaerica|type=transcript|length=2630bp|location=Sequence derived from alignment at sc0000103:101064..103693- (Clytia hemisphaerica)
AGTTAGAGTCCAACATGCTCATGATCAATAACAACAACCATGATAGTAAA
AATAGTAAGACAAATATAACTTTCATTGGGAAATAAGCCAAAATATTACG
CAAGCTTTCGAATATCCTTACAAAGAAATCAAAAATCTGATTGATAATAT
TTTGTTAATTTTTCTCTCTGTACAGTAGGAGAAATATTTCAAAATAAAGT
TTAACGTCACTACTTTTTATTATCACAAGCCCTCCGTGTAGGTCCAGAAG
AACCTAGGTTGGATAAACAATGATTCCTCCCTCCATAGCTAGTGTCTAGT
GAACCAGAGTGAACAGCTGTAATACCCAGTTCTCCATTCCCTACTACTTT
GAATACAAAAACATTACTTTTTAGAGATTTTCATGTTTTGTTTAGGTGTA
ACTTCTGCCATTATGGAAGCAAACGTTTGAATCTGTAGAAGTGAACCCTT
ACGCAAATCGAACAGTTGCTTCCATGATGGCGGAAATGCAATAATAAAAT
GTCTTCTAACATTACATCACGGATCCAACATCTGATTGGTTGCAAGGGAC
GTATTGACTGATTTTACGCCACTTCCAACCGTTGGGTCTATGGTGTGATG
TCAAAGCTTTTTAAATTTAATGTGCAAGTTTTATTGAATTTCAACATTTT
TATCTACAGAGATGATGGAAGGGTGCGGTGACTTGATGTTGATGAAGAAT
GTGGAGAATGAAGGAGATGACATCAATGTAGATACTCTCTCATCTGGTTT
GTCATTACTTTTTTTTGTGTGTGGCAACACTGTTGAGTTTGCCATGGTTT
TGATATTTTGTTTCCTCGCATTGCATTGGTTCAATCGTTAGATTCTACAT
AAACAAATTAAATTATTATTTGGGTACCTTAAAATATTACACCTTAACAC
GTTGATCAAAATTTGATCATGTAGAATGGGATAATCACGATGGGTGGGTT
TTAAAATTTTAAAAATTTTGAAAACTTTAGAATGGGTTAGAAATAGGTTG
AAGGTTAGACTATAGGAGAAATTGAAAGTTTCCATATTGAATTGCTGAAG
AAGTTTGCTTAATTCATCTTATTTACAATCTTTCATTTGTAGATGATGAA
GTGGACATCGAATCATCGTTTAACTTCCAACTATTTCGTGAAAAAAATCT
GCCATCTACCATACCCAACTCTGATGGAGTTCCCTTGCAGCGATATCTGA
CAGTGCGCGCAACATCAAATGATGATTCTAGTTCTTCAAGAGGCTCAAGT
CCTTCACTTTCTTCTATCAAAGCATCCAGTAATGTCCCCAGGAAGGTATG
GAGTTATCATTTAAGACTTTTAATAATCGGTGCACTTTTACATTTCTATT
GATGTGTTAATATGGTACACGCTGTACGAATCATTCCATAAATTCATTTC
AGAATTTTAATGTCAAAAATAATTACATCGCTTCAAGTTTCACACCTAAC
ACAGCAATTTAACACATCTCCACGTATTAAGACAAGACATAAAACATGAA
GCAATGAATTTATATTACACAAGTGAAATAGGTTAAATATCAAGCTGAAA
ATTAATTTATGGTGGCTGGTCTCTCTCTTAAATGCTTTTTCTTCACATAT
ATCCTTTATCTCCTCTTGTGCAGTGTTGAGGCTTTTCTCCCTCTTGACAC
GGTTAAACTTGCCTCCAAAAGGTCCACTGATATTGCCACTATTTCTCTCA
GTTTGAACCACAAGTGATTTTGTGGTTTAAAGATGCTGGCTAAATCGATC
AGCCAGGGGGTGTAGTACGCAGTGGTAATGAGTCCCCAAAAGGACGAAAT
GCATATGCTGCTCTGCCACCCAAATCTCCTGAATGAATATAGTTGGACAG
AAATTCTTATTTCTTCACATATGTATATATCATGTTAATGTCTATCTACC
TTCCTCATTAGGAAATCTTTCTAAAATCAAAGCAACTTTTAATATTACTT
AGATTTCTTTCTCATGATATTACAATCATAATAACGAATTGAGTATGAGT
CTAATATCATTTTGAACAGGGTATCTCATTTCTAGCACATGCAGTATTAT
AGCATCATCTTTCGACTTCGGAAAATTTGAACATTAAAATTATCCTTCCA
CATAACCCGATCTTGTATGACCGTCTTTATTTTCACCATCTCTAAACCTG
TTTCCCTCTTCAAAGTTTCAGGGAAAGTTAACTCCCTTGATCTTAATACG
CCAGATGGTGACCAGAATAGGAGTTTAGATATTATTTTTTCTTTTGCTCT
TAAACATCTTAAACAGTGACCTGCAAACTGCAGATATCTTTCAGTGTTAA
AGTGGTCTTCTGTCTCAGATGGATTCCTGTCTCAGTGGAGTTCATGAAGA
GGTTTTACGGTCTCGAAATTCTGCATAATTCAACAAAATCTCAAGACAAT
GTGCTGATTTGCTGTGTAAAATCCATTTCTGTCTCAGGCGAAAAATTCTA
CTTTGACTGCACGCGGAATTATATGAAATATTGTTTTGCAGGATGAAGAG
CAGTTGACGAAACACAATCAAATGGAAAGACAACGTCGCCGACAGATGAG
CGGCATGTTTGTGGAATTGCGACAACTTGTTATTGATGAAGATACTGTGG
AAGGGGACGGTAGCAGGGATTACCTCAAGG

Coding sequence (CDS) from alignment at sc0000103:101064..103693-

>TCONS_00010191 ID=TCONS_00010191|Name=TCONS_00010191|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at sc0000103:101064..103693- (Clytia hemisphaerica)
GATGAAGAGCAGTTGACGAAACACAATCAAATGGAAAGACAACGTCGCCG
ACAGATGAGCGGCATGTTTGTGGAATTGCGACAACTTGTTATTGATGAAG
ATACTGTGGAAGGGGACGGTAGCAGGGATTACCTCAAGATGATGAAGTGG
ACATCGAATCATCGTTTAACTTCCAACTATTTCGTGAAAAAAATCTGCCA
TCTACCATACCCAACTCTGATGGAGTTCCCTTGCAGCGATATCTGACAGT
GCGCGCAACATCAAATGATGATTCTAGTTCTTCAAGAGGCTCAAGTCCTT
CACTTTCTTCTATCAAAGCATCCAGTAATGTCCCCAGGAAGAGATGATGG
AAGGGTGCGGTGACTTGATGTTGATGAAGAATGTGGAGAATGAAGGAGAT
GACATCAATGTAGATACTCTCTCATCTGTTAGAGTCCAACATGCTCATGA
TCAATAACAACAACCATGATAGTAAAAATAGATGAAGAGCAGTTGACGAA
ACACAATCAAATGGAAAGACAACGTCGCCGACAGATGAGCGGCATGTTTG
TGGAATTGCGACAACTTGTTATTGATGAAGATACTGTGGAAGGGGACGGT
AGCAGGGATTACCTCAAGATGATGAAGTGGACATCGAATCATCGTTTAAC
TTCCAACTATTTCGTGAAAAAAATCTGCCATCTACCATACCCAACTCTGA
TGGAGTTCCCTTGCAGCGATATCTGACAGTGCGCGCAACATCAAATGATG
ATTCTAGTTCTTCAAGAGGCTCAAGTCCTTCACTTTCTTCTATCAAAGCA
TCCAGTAATGTCCCCAGGAAGAGATGATGGAAGGGTGCGGTGACTTGATG
TTGATGAAGAATGTGGAGAATGAAGGAGATGACATCAATGTAGATACTCT
CTCATCTGTTAGAGTCCAACATGCTCATGATCAATAACAACAACCATGAT
AGTAAAAATAGATGAAGAGCAGTTGACGAAACACAATCAAATGGAAAGAC
AACGTCGCCGACAGATGAGCGGCATGTTTGTGGAATTGCGACAACTTGTT
ATTGATGAAGATACTGTGGAAGGGGACGGTAGCAGGGATTACCTCAAGAT
GATGAAGTGGACATCGAATCATCGTTTAACTTCCAACTATTTCGTGAAAA
AAATCTGCCATCTACCATACCCAACTCTGATGGAGTTCCCTTGCAGCGAT
ATCTGACAGTGCGCGCAACATCAAATGATGATTCTAGTTCTTCAAGAGGC
TCAAGTCCTTCACTTTCTTCTATCAAAGCATCCAGTAATGTCCCCAGGAA
GAGATGATGGAAGGGTGCGGTGACTTGATGTTGATGAAGAATGTGGAGAA
TGAAGGAGATGACATCAATGTAGATACTCTCTCATCTGTTAGAGTCCAAC
ATGCTCATGATCAATAACAACAACCATGATAGTAAAAATAGATGAAGAGC
AGTTGACGAAACACAATCAAATGGAAAGACAACGTCGCCGACAGATGAGC
GGCATGTTTGTGGAATTGCGACAACTTGTTATTGATGAAGATACTGTGGA
AGGGGACGGTAGCAGGGATTACCTCAAGATGATGAAGTGGACATCGAATC
ATCGTTTAACTTCCAACTATTTCGTGAAAAAAATCTGCCATCTACCATAC
CCAACTCTGATGGAGTTCCCTTGCAGCGATATCTGACAGTGCGCGCAACA
TCAAATGATGATTCTAGTTCTTCAAGAGGCTCAAGTCCTTCACTTTCTTC
TATCAAAGCATCCAGTAATGTCCCCAGGAAGAGATGATGGAAGGGTGCGG
TGACTTGATGTTGATGAAGAATGTGGAGAATGAAGGAGATGACATCAATG
TAGATACTCTCTCATCTGTTAGAGTCCAACATGCTCATGATCAATAACAA
CAACCATGATAGTAAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005716XLOC_005716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010191-exon-sc0000103-1575043694:103640..103693TCONS_00010191-exon-sc0000103-1575043694:103640..103693Clytia hemisphaericaexon
TCONS_00010191-exon-sc0000103-1575043694:102948..103034TCONS_00010191-exon-sc0000103-1575043694:102948..103034Clytia hemisphaericaexon
TCONS_00010191-exon-sc0000103-1575043694:102399..102601TCONS_00010191-exon-sc0000103-1575043694:102399..102601Clytia hemisphaericaexon
TCONS_00010191-exon-sc0000103-1575043694:101064..101202TCONS_00010191-exon-sc0000103-1575043694:101064..101202Clytia hemisphaericaexon
TCONS_00010191-exon-sc0000103-1510915933:103640..103693TCONS_00010191-exon-sc0000103-1510915933:103640..103693Clytia hemisphaericaexon
TCONS_00010191-exon-sc0000103-1510915933:102948..103034TCONS_00010191-exon-sc0000103-1510915933:102948..103034Clytia hemisphaericaexon
TCONS_00010191-exon-sc0000103-1510915933:102399..102601TCONS_00010191-exon-sc0000103-1510915933:102399..102601Clytia hemisphaericaexon
TCONS_00010191-exon-sc0000103-1510915933:101064..101202TCONS_00010191-exon-sc0000103-1510915933:101064..101202Clytia hemisphaericaexon
TCONS_00010191-exon-sc0000103-1491911889:103640..103693TCONS_00010191-exon-sc0000103-1491911889:103640..103693Clytia hemisphaericaexon
TCONS_00010191-exon-sc0000103-1491911889:102948..103034TCONS_00010191-exon-sc0000103-1491911889:102948..103034Clytia hemisphaericaexon
TCONS_00010191-exon-sc0000103-1491911889:102399..102601TCONS_00010191-exon-sc0000103-1491911889:102399..102601Clytia hemisphaericaexon
TCONS_00010191-exon-sc0000103-1491911889:101064..101202TCONS_00010191-exon-sc0000103-1491911889:101064..101202Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010191-proteinTCONS_00010191-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:101064..103693 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.776885	0.252528	0.439814	0	7.33371	5.65721	0.665872	1.55845	0.872888	0.405455	0.91827	0.344934	0.344454	0.0894298	0.22057	0.39451	0.194402	0.697393	0	0.288063	0.625947	0.732756	0.29692	0.674859	2.22429	2.10919	0.177544	0	0.431141	1.31779
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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