TCONS_00010188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010188
Unique NameTCONS_00010188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1902

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010188 ID=TCONS_00010188|Name=TCONS_00010188|organism=Clytia hemisphaerica|type=transcript|length=1902bp
TATCGTTTGGTTCACTCCTACAACAAAAGAAAGTCACGTGGTGTCCAAAC
CTCCTGAAAAAACAGAGGCGTGCGCATCACCATCAACTCAAGACTCATTC
ACATCGACAGCCATCAACGAAGCGCATGATTCGGTCTGTCATCTCAAGAT
TGAAAACGTCAAATCGATAGCACTTGAAACTTCTTCAAAAAATCCTCCTT
CAAGCGAAATGAACAGTTCGATGTCACTTGAACCCTTATCAAGAAATCCT
CCTTCAAGCGAAAATATCAGTTCGATGGCACTTGAAACCTCATCAAAAAG
TCACCTTACaagtgaaatgaaaatttcaaatgatCGAACACCAAGCCCAG
ATATCGTTGAAACCTCGGTCAAAAGCCTAATATCTGGTCGTCCCGATTTG
ACCAATGGACCATCTGTAATCGTGGCAACCAAAGACAAAACAACTGTAAA
CACAGAATTGCTTCCCCTTGTCACTTCAGATAGAATCAATATTGGCAGTA
AGTCTCAAGCAGTTACCACGACATGTATCCATGGCAATGTGACCTCAGCT
CATGTGACTTCATCTCTTGTGACGTCAACTCATGTGACATCAACTTTCAA
TAGCATTGGAACATCCGATAATGACCATTCATCGATACCAAACTTGTTAG
CCTTTGTTACAAAGAACTCCATCCCTCTGCATCCCTTAAACGCTACAAAA
CTTCATGGAGAACAACTTGGAATTCAGAACGAAGCTATCACCAAACACTC
TCTTCCAGAGACACCGGAGACCTCTTACCAGGCTCCAGACTGTGAATCAA
CACGTGTTCCTCCAGATCAAGACATCAAGATATCGTTCCCAGAAACGACA
TTGACTGATCAGGATACTCTTTGTGATTTGAGAATCGAAAAAGTGGAATC
CGTTGCGAAATTTCCACATTCAACACTTTCTGATCAGGATGAAGTTAACT
TTACCATAAAGGACGTTAAATCAATAACAAACCTTTCGCACAGGACTTCA
TCACCTCTGAATGATTCACGTGGCAAAGATGTCGATTCCTCAACAACCAA
AAGACTTGACTCTTCAAGAGATGTTAAAATAATTCAAGTTATTGATGCAA
TGAAGCAACTCAGTGGCTCAACTCGACAAGCGGATCAATACCTAAATAAT
TCTACACTGGCAGGAAAAACCCATCCTGGAAACCCCGTCTCGTCGCCTTC
CTCAAATTCTGCTCAATACAATGCTTACACTGAATCATTCCTGGCTACAA
AGGATGCTTTCACTTCAAATAAATCTTCTCACGGTTCCCTTTTCAAAGCC
ATCGAACATCATTCGGCTGACAGCGACAGTGATGACCTTCTCGTGATCGA
TGATCTACTCGACGAAGAAGCACAAACTTCTACGATGCAACCCTTGAGTT
CTACGAACCCTGATTGTACCACACAAAAGAAACAGGGACATACCCACAAA
GACTCACTAAACTGTAAAGAGCAACAATCGAATGTGAAGTACACCAACCG
TACCACACAAGAGAAACAGGGACATTTAACCCACAAAGATTCACTAAGCT
GTAAGGACCAACATCCGCCCCAACAAAGCGCCCCGTCTCCATCAACTCCA
ATACACGAAGACAAAGAACGGTCACGTGACGAGGTCAGACATCAATATAG
ATCTGCAACGATCCAAGGAGTTGAAACGTTCCTCCAAACCTTCCAGAAGA
AACAATCTCAGAGCATCCAACAACACTCTGCAACAAACATCCCTCAAACT
CATTCAACTGAAGATGCGAAAACAACAACATCAGACATCAAGTTGACCAA
TCATCCAACTTCTTCAGCTAATGCACTTGAAATAAGAGAAGcaccAACCA
ATCAGACAACCACAACATTGCGAGATTCCTCCACCACAACCATCAACAGC
AG
Run BLAST on NCBI

transcript from alignment at sc0000103:92852..96899-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010188 ID=TCONS_00010188|Name=TCONS_00010188|organism=Clytia hemisphaerica|type=transcript|length=4048bp|location=Sequence derived from alignment at sc0000103:92852..96899- (Clytia hemisphaerica)
TATCGTTTGGTTCACTCCTACAACAAAAGAAAGTCACGTGGTGTCCAAAC
CTCCTGAAAAAACAGAGGCGTGCGCATCACCATCAACTCAAGACTCATTC
ACATCGACAGCCATCAACGAAGCGCATGATTCGGTCTGTCATCTCAAGAT
TGAAAACGTCAAATCGATAGCACTTGAAACTTCTTCAAAAAATCCTCCTT
CAAGCGAAATGAACAGTTCGATGTCACTTGAACCCTTATCAAGAAATCCT
CCTTCAAGCGAAAATATCAGTTCGATGGCACTTGAAACCTCATCAAAAAG
TCACCTTACAAGTGAAATGAAAATTTCAAATGATCGAACACCAAGCCCAG
ATATCGTTGAAACCTCGGTCAAAAGCCTAATATCTGGTCGTCCCGATTTG
ACCAATAGACCATCTGTAATCGTGGCAACCAAAGACAAAACAACTGCAAA
CACAGAATTGCTTTCCCTTGTCACTTCAGATAGCATCAATATTGGCAGTA
AGTCTCAAGCAGTTACCACGACATGTATCCATGGCAATGTGACCTCAGCT
CATGTGACGTCATCTCTTGTGACGTCAACTCATGTGACATCAACTTTCAA
TAGCATTGGAATATCCGATAATGACCATTCATCGACACCAAACTTGGTAG
CCTTTGTTACAAAANTATAACATTCTTGGAAATTGACTTTTGACCCCCCG
GACAGCAGGTCTAACCCCTCAGACAAGCATCAGTTGACCCCTGGACATTC
AAAATTACCCTCAAACAGGGCAAAACTAACCCAAAACAGAGAAAATTTAT
CCCCCGGACAAGGAAAATTTTGTAGATTTTTCACTACCCCCGGACACTAT
ATTCTCCGACCCCACGTGCATGGGTACGGACATTTTCTGGAAGAGCGCAT
TGCTATTATTTCACTACTTTGTAAAATATAACGCAAATATGCTATTCTTT
TTTTCAGTATCGTTTGGTTCACTCCTACAACAAAAGAAAGTCACGTGGTG
TCCAAACCTCCTGAAAAAACAGAGGCGTGCGCATCACCATCAACTCAAGA
CTCATTCACATCGACAGCCATCAACGAAGCGCATGATTCGGTCTGTCATC
TCAAGATTGAAAACGTCAAATCGATAGCACTTGAAACTTCTTCAAAAAAT
CCTCCTTCAAGCGAAATGAACAGTTCGATGTCACTTGAACCCTTATCAAG
AAATCCTCCTTCAAGCGAAAATATCAGTTCGATGGCACTTGAAACCTCAT
CAAAAAGTCACCTTACAAGTGAAATGAAAATTTCAAATGATCGAACACCA
AGCCCAGATATCGTTGAAACCTCGGTCAAAAGCCTAATATCTGGTCGTCC
CGATTTGACCAATGGACCATCTGTAATCGTGGCAACCAAAGACAAAACAA
CTGTAAACACAGAATTGCTTCCCCTTGTCACTTCAGATAGAATCAATATT
GGCAGTAAGTCTCAAGCAGTTACCACGACATGTATCCATGGCAATGTGAC
CTCAGCTCATGTGACTTCATCTCTTGTGACGTCAACTCATGTGACATCAA
CTTTCAATAGCATTGGAACATCCGATAATGACCATTCATCGATACCAAAC
TTGTTAGCCTTTGTTACAAAGAACTCCATCCCTCTGCATCCCTTAAACGC
TACAAAACTTCATGGAGAACAACTTGGAATTCAGAACGAAGCTATCACCA
AACACTCTCTTCCAGAGACACCGGAGACCTCTTACCAGGCTCCAGACTGT
GAATCAACACGTGTTCCTCCAGATCAAGACATCAAGATATCGTTCCCAGA
AACGACATTGACTGATCAGGATACTCTTTGTGATTTGAGAATCGAAAAAG
TGGAATCCGTTGCGAAATTTCCACATTCAACACTTTCTGATCAGGATGAA
GTTAACTTTACCATAAAGGACGTTAAATCAATAACAAACCTTTCGCACAG
GACTTCATCACCTCTGAATGATTCACGTGGCAAAGATGTCGATTCCTCAA
CAACCAAAAGACTTGACTCTTCAAGAGATGTTAAAATAATTCAAGTTATT
GATGCAATGAAGCAACTCAGTGGCTCAACTCGACAAGCGGATCAATACCT
AAATAATTCTACACTGGCAGGAAAAACCCATCCTGGAAACCCCGTCTCGT
CGCCTTCCTCAAATTCTGCTCAATACAATGCTTACACTGAATCATTCCTG
GCTACAAAGGATGCTTTCACTTCAAATAAATCTTCTCACGGTTCCCTTTT
CAAAGCCATCGAACATCATTCGGCTGACAGCGACAGTGATGACCTTCTCG
TGATCGATGATCTACTCGACGAAGAAGCACAAACTTCTACGATGCAACCC
TTGAGTTCTACGAACCCTGATTGTACCACACAAAAGAAACAGGGACATAC
CCACAAAGACTCACTAAACTGTAAAGAGCAACAATCGAATGTGAAGTACA
CCAACCGTACCACACAAGAGAAACAGGGACATTTAACCCACAAAGATTCA
CTAAGCTGTAAGGACCAACATCCGCCCCAACAAAGCGCCCCGTCTCCATC
AACTCCAATACACGAAGACAAAGAACGGTCACGTGACGAGGTCAGACATC
AATATAGATCTGCAACGATCCAAGGAGTTGAAACGTTCCTCCAAACCTTC
CAGAAGAAACAATCTCAGAGCATCCAACAACACTCTGCAACAAACATCCC
TCAAACTCATTCAACTGAAGATGCGAAAACAACAACATCAGACATCAAGT
TGACCAATCATCCAACTTCTTCAGCTAATGCACTTGAAATAAGAGAAGGT
ATGTTAACATTTTTCGCAATCAAGTACCGTATTATTTCGAATAAACCCCC
CCTGCTTTTGAAAAACGTTTCTTGGTACGGGACGCGCCACTTGTTAGGGT
ACCCTAGACAATATCATATCTGACGGTTAATTTCTAGAATTTAGCGCTGC
ATCAGCCCTTAGCAGTGTGGTCGGCTTTTTAGGGAACTGGGAATGAATTT
ACAAGGAAGATTTGTTGATTTGTGCACGCCATAACTAAATCTAGATTTGT
TCTCGGCACACGGCATTTTTACGCCATAACTAAATCAAACTAAGCAAATT
CCACCCGAAACTCCTGAGACATTTTCTCGAGTCTCTGTGGTGGAGTGCAT
TCTAGCTTAATTATATTGACGTAACTATATCGCTTCAATAAAAATCTTTA
CCAGAATATCAACGCAGTCCCTCTGCCCTCTCCGCTTTAAAGGCTCTTGG
TTTCATTTTATCAATCATTTTTACTACACAAATTTAGCGAAATGAAAGCT
TACAAATTTTGACACTTATAAGAGGTTTTCTACTTTTTCTACTCAAAGCA
TCCACCATTCACTTGAGGAAGGGTTTTGAAGGGATCACGAACTTTAAAGA
ACTATTTAGAGACAGTAGTACAATATAACAACAATTATTTGAATAAATAT
GACCCTTCTGATCACAAAGAGCTACTCGTCTAATTGGAGCTTTAGACAAT
TTTTGATTCTGATGACATAATGCATCTCAATTGCTTTGAAATTTTCAGCA
CCAACCAATCAGACAACCACAACATTGCGAGATTCCTCCACCATAACCAT
CAACAGCAGACCTGTGTCAATCCATGGACAACATAGCCGCCAACCAAACT
CCTCCAAGACATTGAGCACACTCTCGGATCCCTTAACATCACTTGAGCCA
AACAATCCGGCAACAATGAGAAAAACTCATTCCACGATTGATGGCANTTG
ACACTTATAAGAGGTTTTCTACTTTTTCTACTCAAAGCATCCACCATTCA
CTTGAGGAAGGGTTTTGAAGGGATCACGAACTTTAAAGAACTATTTAGAG
ACAGTAGTACAATATAACAACAATTATTTGAATAAATATGACCCTTCTGA
TCACAAAGAGCTACTCGTCTAATTGGAGCTTTAGACAATTTTTGATTCTG
ATGACATAATGCATCTCAATTGCTTTGAAATTTTCAGCACCAACCAATCA
GACAACCACAACATTGCGAGATTCCTCCACCACAACCATCAACAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005715XLOC_005715Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010188-exon-sc0000103-1575043694:96833..96899TCONS_00010188-exon-sc0000103-1575043694:96833..96899Clytia hemisphaericaexon
TCONS_00010188-exon-sc0000103-1575043694:94102..95875TCONS_00010188-exon-sc0000103-1575043694:94102..95875Clytia hemisphaericaexon
TCONS_00010188-exon-sc0000103-1575043694:92852..92912TCONS_00010188-exon-sc0000103-1575043694:92852..92912Clytia hemisphaericaexon
TCONS_00010188-exon-sc0000103-1510915933:96833..96899TCONS_00010188-exon-sc0000103-1510915933:96833..96899Clytia hemisphaericaexon
TCONS_00010188-exon-sc0000103-1510915933:94102..95875TCONS_00010188-exon-sc0000103-1510915933:94102..95875Clytia hemisphaericaexon
TCONS_00010188-exon-sc0000103-1510915933:92852..92912TCONS_00010188-exon-sc0000103-1510915933:92852..92912Clytia hemisphaericaexon
TCONS_00010188-exon-sc0000103-1491911889:96833..96899TCONS_00010188-exon-sc0000103-1491911889:96833..96899Clytia hemisphaericaexon
TCONS_00010188-exon-sc0000103-1491911889:94102..95875TCONS_00010188-exon-sc0000103-1491911889:94102..95875Clytia hemisphaericaexon
TCONS_00010188-exon-sc0000103-1491911889:92852..92912TCONS_00010188-exon-sc0000103-1491911889:92852..92912Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:92852..96899 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (0.398552 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0773917	0.398552	0.181785	0	0.182302	0	0	0	0	0	0.136821	0	0	0	0	0	0	0.0432677	0	0	0	0	0.208432	0	0.0630363	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
20040060080010001200140016001800Sequence
Match NameE-valueIdentityDescription
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