TCONS_00010178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010178
Unique NameTCONS_00010178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010178 ID=TCONS_00010178|Name=TCONS_00010178|organism=Clytia hemisphaerica|type=transcript|length=1220bp
GTTTAGGTGAGGTCTTTGGTGTATTTTTGCAGCAAATTTTACTGATCCTA
CATTTGCCCTTTAGTGACAATAAAAACACAAACAAATACATAGTGAAGGA
TGGAGTTTGACGAGGCATCTTTCAACCAACATCACAACCATTTCTGTAAT
GGCTCCAAAAAACGAAAAGTTGGTGACTTAACATCACATtacatcaacaa
caacaacaacaatgcAGAAACACTACCCATTCGACGAGACTTTCTTTTCT
TAACATCAGATATGAATCTACACCATTTAGACCATTTGCCAGATCTACCA
TACTCCACCAGGAAACAAAACTCAAACGTTGTTTACCTCCCTCTAAAAAA
CAACATTCTTATAAACATGAAAGCGTACACAGAAATCATGTTCCGGACGG
ATCAATTCTTCTTGGGAGATGAGACCGGCCGTTACGAGAAGACCGTTCAA
GCCACGGCTATTGATTTTCTTATGCACTGCCCAAATGAGAGAAGATTGTA
CGTGGCACGATCGATTGTTACAACGGATAAAAGGGTGGGTGAAGAGATTG
CAAAGAAGATCATGAATGGATGAAGTTGTTGAATGGATGAGAATCTCTCA
TATGAATCGCTTGGAACTTGGTGGTTCTGGATCTGTCTTTTGTCTTttgc
aattttgaaaaataaatttttatagaatttagtattaaaaacgaaaaaac
aaaacaaaacaaaacttaacTTTATTGTCTTAGAAGTAATACATTGTACA
TTTCAAATCATTTTCTGTATATATAGTGgagcctccataactcgaacacg
aaAGGGGGACATAAATTAGTTCCAGTTGAACTTGAGTTATGGAGTTTATA
AGGTTTATATAAAGCATTATTAACTTAAGGGACGAGAAAAccttttcgag
ttaaggagacattcgagttaaaggttttcgagttaaagagactccattgT
AGTTTTTTTATCGACGAATCAAAGTGGTTTAGAATGCGATATCAATATGA
TCGATTAATTACCCGAAGATTATCCACCAGCATGCCGTATATGAAATAaa
tcaaagtttaaaaaatatttcataaaatatattaAGGCAAAATCTCTGAT
ATGTACAATTTTGAGAACTACTTTTTACGGTAGGGAAAGTTTCTTAGAGA
ATTTGTTTTAGTTGTTTTACTGTTTTTGTTAATATCTTTGTAAATATTAA
GATTTTATATTCATTTGTAC
Run BLAST on NCBI

protein sequence of TCONS_00010178-protein

>TCONS_00010178-protein ID=TCONS_00010178-protein|Name=TCONS_00010178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MEFDEASFNQHHNHFCNGSKKRKVGDLTSHYINNNNNNAETLPIRRDFLF
LTSDMNLHHLDHLPDLPYSTRKQNSNVVYLPLKNNILINMKAYTEIMFRT
DQFFLGDETGRYEKTVQATAIDFLMHCPNERRLYVARSIVTTDKRVGEEI
AKKIMNG
Run BLAST on NCBI

transcript from alignment at sc0000103:32897..34439-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010178 ID=TCONS_00010178|Name=TCONS_00010178|organism=Clytia hemisphaerica|type=transcript|length=1543bp|location=Sequence derived from alignment at sc0000103:32897..34439- (Clytia hemisphaerica)
GTTTAGGTGAGGTCTTTGGTGTATTTTTGCAGCAAATTTTACTGATCCTA
CATTTGCCCTTTAGTGACAATAAAAACACAAACAAATACATAGTGAAGGA
TGGAGTTTGACGAGGCATCTTTCAACCAACATCACAACCATTTCTGTAAT
GGCTCCAAAAAACGAAAAGTTGGTGACTTAACATCACATTACATCAACAA
CAACAACAACAATGCAGAAACACTACCCATTCGACGAGACTTTCTTTTCT
TAACATCAGATATGAATCTACACCATTTAGACCATTTGCCAGATCTACCA
TACTCCACCAGGAAACAAAACTCAAACGTTGTTTACCTCCCTCTAAAAAA
CAACATTCTTATAAACATGAAAGCGTACACAGAAATCATGTTCCGGACGG
ATCAATTCTTCTTGGGAGATGAGACCGGCCGTTACGAGAAGACCGTTCAA
GCCACGGCTATTGATTTTCTTATGCACTGCCCAAATGAGAGAAGATTGTA
CGTGGCACGATCGATTGTTACAACGGATAAAAGGGTTGGTAGCTATAATG
AAAATATTTTTTAAAACCAACAAATTGTGCCGATTCTAAATTTTCTATAA
CAACGAATGTCTAATAGTGAGCATATATTTTCTGGCCTTTAAAAAAAATA
CCCTGATATGCGACTTTAAAGGTAGGAACTGTATGAGGACAAATTGATAA
GAAAGCCAAGTCTGAATTTCATGATTTTAAGTCCCTCTTCTAAGTCCTTT
AAAGACCTTAAGTGCACTTTAAGAACGCTTAAACCTGGTAAATTTTCACC
GTCAAGGCTAAGTCGATTTTTCCATGGTTCCATGACGATTCAACTTTTTC
CATACAGGTGGGTGAAGAGATTGCAAAGAAGATCATGAATGGATGAAGTT
GTTGAATGGATGAGAATCTCTCATATGAATCGCTTGGAACTTGGTGGTTC
TGGATCTGTCTTTTGTCTTTTGCAATTTTGAAAAATAAATTTTTATAGAA
TTTAGTATTAAAAACGAAAAAACAAAACAAAACAAAACTTAACTTTATTG
TCTTAGAAGTAATACATTGTACATTTCAAATCATTTTCTGTATATATAGT
GGAGCCTCCATAACTCGAACACGAAAGGGGGACATAAATTAGTTCCAGTT
GAACTTGAGTTATGGAGTTTATAAGGTTTATATAAAGCATTATTAACTTA
AGGGACGAGAAAACCTTTTCGAGTTAAGGAGACATTCGAGTTAAAGGTTT
TCGAGTTAAAGAGACTCCATTGTAGTTTTTTTATCGACGAATCAAAGTGG
TTTAGAATGCGATATCAATATGATCGATTAATTACCCGAAGATTATCCAC
CAGCATGCCGTATATGAAATAAATCAAAGTTTAAAAAATATTTCATAAAA
TATATTAAGGCAAAATCTCTGATATGTACAATTTTGAGAACTACTTTTTA
CGGTAGGGAAAGTTTCTTAGAGAATTTGTTTTAGTTGTTTTACTGTTTTT
GTTAATATCTTTGTAAATATTAAGATTTTATATTCATTTGTAC

Coding sequence (CDS) from alignment at sc0000103:32897..34439-

>TCONS_00010178 ID=TCONS_00010178|Name=TCONS_00010178|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at sc0000103:32897..34439- (Clytia hemisphaerica)
GTGGGTGAAGAGATTGCAAAGAAGATCATGAATGGATGAATGGAGTTTGA
CGAGGCATCTTTCAACCAACATCACAACCATTTCTGTAATGGCTCCAAAA
AACGAAAAGTTGGTGACTTAACATCACATTACATCAACAACAACAACAAC
AATGCAGAAACACTACCCATTCGACGAGACTTTCTTTTCTTAACATCAGA
TATGAATCTACACCATTTAGACCATTTGCCAGATCTACCATACTCCACCA
GGAAACAAAACTCAAACGTTGTTTACCTCCCTCTAAAAAACAACATTCTT
ATAAACATGAAAGCGTACACAGAAATCATGTTCCGGACGGATCAATTCTT
CTTGGGAGATGAGACCGGCCGTTACGAGAAGACCGTTCAAGCCACGGCTA
TTGATTTTCTTATGCACTGCCCAAATGAGAGAAGATTGTACGTGGCACGA
TCGATTGTTACAACGGATAAAAGGGTGGGTGAAGAGATTGCAAAGAAGAT
CATGAATGGATGAATGGAGTTTGACGAGGCATCTTTCAACCAACATCACA
ACCATTTCTGTAATGGCTCCAAAAAACGAAAAGTTGGTGACTTAACATCA
CATTACATCAACAACAACAACAACAATGCAGAAACACTACCCATTCGACG
AGACTTTCTTTTCTTAACATCAGATATGAATCTACACCATTTAGACCATT
TGCCAGATCTACCATACTCCACCAGGAAACAAAACTCAAACGTTGTTTAC
CTCCCTCTAAAAAACAACATTCTTATAAACATGAAAGCGTACACAGAAAT
CATGTTCCGGACGGATCAATTCTTCTTGGGAGATGAGACCGGCCGTTACG
AGAAGACCGTTCAAGCCACGGCTATTGATTTTCTTATGCACTGCCCAAAT
GAGAGAAGATTGTACGTGGCACGATCGATTGTTACAACGGATAAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005713XLOC_005713Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010178-proteinTCONS_00010178-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010178-exon-sc0000103-1575043694:33906..34439TCONS_00010178-exon-sc0000103-1575043694:33906..34439Clytia hemisphaericaexon
TCONS_00010178-exon-sc0000103-1575043694:32897..33582TCONS_00010178-exon-sc0000103-1575043694:32897..33582Clytia hemisphaericaexon
TCONS_00010178-exon-sc0000103-1510915933:33906..34439TCONS_00010178-exon-sc0000103-1510915933:33906..34439Clytia hemisphaericaexon
TCONS_00010178-exon-sc0000103-1510915933:32897..33582TCONS_00010178-exon-sc0000103-1510915933:32897..33582Clytia hemisphaericaexon
TCONS_00010178-exon-sc0000103-1491911889:33906..34439TCONS_00010178-exon-sc0000103-1491911889:33906..34439Clytia hemisphaericaexon
TCONS_00010178-exon-sc0000103-1491911889:32897..33582TCONS_00010178-exon-sc0000103-1491911889:32897..33582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:32897..34439 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.36858	1.26614	7.86707	8.27978	0.89914	0.635722	5.05299	4.01252	6.56479	3.77275	8.39042	4.55733	16.5236	17.378	13.9882	17.9625	3.02947	3.48312	9.21391	5.543	4.00358	2.78027	3.0579	3.51167	3.54159	5.3128	0.384942	0.359468	1.01268	0.873025
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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