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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010176 ID=TCONS_00010176|Name=TCONS_00010176|organism=Clytia hemisphaerica|type=transcript|length=394bp
TCAATCACCAAGCCGACATTCATTAAACGATCATCAATCAAACCACCATT
CCCCAGTGTACCACCGTAAAGACTCGCAACAAGCAGCAGCAGATATTGAC
ATGTTCGTTGGAAAGCGACTCGATGATAGATTGAATGCCATTGAAAAGTC
TGTTGCAGATGTCAACGAAAGACAAAGAAAGCTTTTGGAACAGCTGGTAA
AAATCCACGAACTTTTAAAGTTTAGAGATAGGAACGACAATGTTGAAAGT
ACGATTCCCACAATTGAAAACCAGGAGGACTTTGAATCCGTTGAAAGTGC
TCTGGAAAGCATAAACACAAAAAGTGAATTAATTCGAAATATACGAAGAT
TTGGTGGGAAAGACTATACTGACATGGTGAACACAACATGTGAT Run BLAST on NCBI protein sequence of TCONS_00010176-protein >TCONS_00010176-protein ID=TCONS_00010176-protein|Name=TCONS_00010176-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
QSPSRHSLNDHQSNHHSPVYHRKDSQQAAADIDMFVGKRLDDRLNAIEKS
VADVNERQRKLLEQLVKIHELLKFRDRNDNVESTIPTIENQEDFESVESA
LESINTKSELIRNIRRFGGKDYTDMVNTTCD Run BLAST on NCBI transcript from alignment at sc0000103:356617..358527+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010176 ID=TCONS_00010176|Name=TCONS_00010176|organism=Clytia hemisphaerica|type=transcript|length=1911bp|location=Sequence derived from alignment at sc0000103:356617..358527+ (Clytia hemisphaerica)
TCAATCACCAAGCCGACATTCATTAAACGATCATCAATCAAACCACCATT
CCCCAGTGTACCACCGTAAAGACTCGCAACAAGCAGCAGCAGATATTGAC
ATGTTCGTTGGAAAGCGACTCGATGATAGATTGAATGCCATTGAAAGTAA
GTTTTGTAGCAATGATTTAGATTCCTATTATTTCGGAGAATTCTAAGTGT
AGGAAAGGTGTAGGAATAAGATTGAGATAGAGAAAATTAGTTAAGGCCAA
TTGTAAAATCCATATGTTAAATACTTTCAAGAGGGNTGACAAAATTAGTT
ATGGCCAATTGTAAAATCCAtctgttaaatattttttagaggATGTCCAC
CACTTGGTAAGGCTTGAGTATTTCTTAGACCTCCAGACTCCACATGATAC
AATATATCATTATCGGTTGATTATCTTTGAATATTAAATCTAGTGTATTA
GTGTAAATCTAAAATAGACAAAGGGAATGATCTAGTGTAGTGTAAAGGtg
atattttgtcaagaatattAGCATCTAATCATGATCAAACCAAACATATA
TTTGACTTTGTTCCgagaaaatgtgaaaattatATTGCCATTTTCCTAAA
TAGCCTATAAATAGAACATAAGACGTTTTACCATTTCATTCAGAGTCTGT
TGCAGATGTCAACGAAAGACAAAGAAAGCTTTTGGAACAGCTGGTAAAAA
TCCACGAACTTTTAAAGTTTAGAGATAGGAACGACAATGTTGAAAGTACG
ATTCCCACAATTGAAAACCAGGAGGACTTTGAATCCGTTGAAAGTGCTCT
GGAAAGCATAAACACAAAAAGTGAATTAGTGAGTACTATATGTTATCACT
GTCTGTACCCCAAAATGCcgataaattttacttttttctctGATACCATT
TAATAACTGGTCTCGTAAGAAAAATATCCGAGCTGTAAACATACTTAATA
TAAACTCTCGCAGACGTCAAACTTAAAACCTACATTTTTGGACTCACTAT
CGTTTTGTGGTGCGGATAGTGTATCTTTGGAGTAAAGCTAATCATTCTGC
ATAGTAGACATAAAATTagtatatatttaaaaattgttttaagtAAAGTT
TATTAGTAGCTTAACCAGAATTTTTTTCCCATTTGCTATTTTTCTTTAGT
AAAGAGTTCAAAGCAATAGTTCTCAGTGAATAAATTGAATTGCttttaat
acacccctgtgtaacagacccggtaggactgGTGGAGCCCCTACCAACTG
AATAATTAGGCTAAAATTTCGTCTCCAAAgagaaaaataccctaaaattt
cagctccactggaaaattgactttggtttCAGCCCTATTtgaaattgaat
ggaaaaattgcactccaaaaccatcccactgaattttctcaCCTGCGAAC
AATggaatttctatccctattcgtatttcgataaaaaatttcatttctag
aaGTACCTCCTGGGTTGTGAGACAGTGGTGTTTTATTTATTAATCTATCT
TTACTAGCTATAACAATAATCGGTAATAAAAAATGCGCGATCTCTCGTTT
AGTTATTTTTCTGAAGACTCTAAGCAATTTGGGCGATTTTtgagcgcagc
tggtttatctTTAATTCGGGTTATTAAGGTAAAGCCAATGAAAGTAACAA
ACTTTAGCTATAGCCTTAGCCATATTATTTATAAGGTCAAACAAACTTAA
TTACGCGTTTGACATCTTATCTCATACTCCTCTGAGACTTTCATGTTTCT
TCCAACTTTCTACGGAAGGGAGTATGTGGAATTAGCTCAATCAAATTGAG
GATTTGAGTTTAAATCATAAATTATAttactttcaatttttgcaCTAGAT
TCGAAATATACGAAGATTTGGTGGGAAAGACTATACTGACATGGTGAACA
CAACATGTGAT Coding sequence (CDS) from alignment at sc0000103:356617..358527+ >TCONS_00010176 ID=TCONS_00010176|Name=TCONS_00010176|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at sc0000103:356617..358527+ (Clytia hemisphaerica)
CAATCACCAAGCCGACATTCATTAAACGATCATCAATCAAACCACCATTC
CCCAGTGTACCACCGTAAAGACTCGCAACAAGCAGCAGCAGATATTGACA
TGTTCGTTGGAAAGCGACTCGATGATAGATTGAATGCCATTGAAAAGTCT
GTTGCAGATGTCAACGAAAGACAAAGAAAGCTTTTGGAACAGCTGGTAAA
AATCCACGAACTTTTAAAGTTTAGAGATAGGAACGACAATGTTGAAAGTA
CGATTCCCACAATTGAAAACCAGGAGGACTTTGAATCCGTTGAAAGTGCT
CTGGAAAGCATAAACACAAAAAGTGAATTAATTCGAAATATACGAAGATT
TGGTGGGAAAGACTATACTGACATGGTGAACACAACATGTGATCAATCAC
CAAGCCGACATTCATTAAACGATCATCAATCAAACCACCATTCCCCAGTG
TACCACCGTAAAGACTCGCAACAAGCAGCAGCAGATATTGACATGTTCGT
TGGAAAGCGACTCGATGATAGATTGAATGCCATTGAAAAGTCTGTTGCAG
ATGTCAACGAAAGACAAAGAAAGCTTTTGGAACAGCTGGTAAAAATCCAC
GAACTTTTAAAGTTTAGAGATAGGAACGACAATGTTGAAAGTACGATTCC
CACAATTGAAAACCAGGAGGACTTTGAATCCGTTGAAAGTGCTCTGGAAA
GCATAAACACAAAAAGTGAATTAATTCGAAATATACGAAGATTTGGTGGG
AAAGACTATACTGACATGGTGAACACAACATGTGATCAATCACCAAGCCG
ACATTCATTAAACGATCATCAATCAAACCACCATTCCCCAGTGTACCACC
GTAAAGACTCGCAACAAGCAGCAGCAGATATTGACATGTTCGTTGGAAAG
CGACTCGATGATAGATTGAATGCCATTGAAAAGTCTGTTGCAGATGTCAA
CGAAAGACAAAGAAAGCTTTTGGAACAGCTGGTAAAAATCCACGAACTTT
TAAAGTTTAGAGATAGGAACGACAATGTTGAAAGTACGATTCCCACAATT
GAAAACCAGGAGGACTTTGAATCCGTTGAAAGTGCTCTGGAAAGCATAAA
CACAAAAAGTGAATTAATTCGAAATATACGAAGATTTGGTGGGAAAGACT
ATACTGACATGGTGAACACAACATGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010176-exon-sc0000103-1491911889:356617..356762 | TCONS_00010176-exon-sc0000103-1491911889:356617..356762 | Clytia hemisphaerica | exon |
| TCONS_00010176-exon-sc0000103-1510915933:356617..356762 | TCONS_00010176-exon-sc0000103-1510915933:356617..356762 | Clytia hemisphaerica | exon |
| TCONS_00010176-exon-sc0000103-1575043694:356617..356762 | TCONS_00010176-exon-sc0000103-1575043694:356617..356762 | Clytia hemisphaerica | exon |
| TCONS_00010176-exon-sc0000103-1491911889:357260..357444 | TCONS_00010176-exon-sc0000103-1491911889:357260..357444 | Clytia hemisphaerica | exon |
| TCONS_00010176-exon-sc0000103-1510915933:357260..357444 | TCONS_00010176-exon-sc0000103-1510915933:357260..357444 | Clytia hemisphaerica | exon |
| TCONS_00010176-exon-sc0000103-1575043694:357260..357444 | TCONS_00010176-exon-sc0000103-1575043694:357260..357444 | Clytia hemisphaerica | exon |
| TCONS_00010176-exon-sc0000103-1491911889:358465..358527 | TCONS_00010176-exon-sc0000103-1491911889:358465..358527 | Clytia hemisphaerica | exon |
| TCONS_00010176-exon-sc0000103-1510915933:358465..358527 | TCONS_00010176-exon-sc0000103-1510915933:358465..358527 | Clytia hemisphaerica | exon |
| TCONS_00010176-exon-sc0000103-1575043694:358465..358527 | TCONS_00010176-exon-sc0000103-1575043694:358465..358527 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:356617..358527 + |
Blast
The following BLAST results are available for this feature:
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