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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010169 ID=TCONS_00010169|Name=TCONS_00010169|organism=Clytia hemisphaerica|type=transcript|length=2689bp
AGAAAAGTAGTGAAAACACGTCATACAGATGTAGACAAATGAtaacaaat
tttacaaactCTATTACACATTTTGTTTCTGCCCATGCTGTCATAAAAAA
GGGATtattaaaccaaaatttgggtaaattgtttgttttagagGGGGGTC
AGGATTAGATAGGGGTGGTCGGGATTAGGCAACCTGACGGTACATGACGT
TGGAATAGTCGTAAAAGTCGTAAAAGTCATAATTACCAATAATTTGCTTG
CGTTCTATCTGGGgaataaatttgtttttaaatatgacTTGAACTATAGA
CTCATTAAATGTGTGAATTTATGGTATAGTGTTTTTTAAGAGCCTTGTGt
gatttgatgaaatttaagTGTTTGCATCGTAATCAATTACGCTAATCGTT
TTCATTTGGACAGTATTGGTAATGAGTCAAcgctatttttaattttggta
atGTTATGGGGACGCTTTTTTGGATGGATTCCCTGACTGTAAGTATGCTG
CATTTTGGTAAGGGTACTCTCCATCATAGACACTAAATGATTgagcaaaa
aattttaaaaatagctctaaaaactttttgcacggtgaaattttttcaaa
ctttcaagaaTAGTAGAAAACTATTATTTGAACAATTCTAACCAGCgcaa
ttttttactttttcttttctttgttctCAACGAAGAACTGAAAACTGATG
TATGGAGTGAGAGAAAAAATGCCTTTGTATGAGCATGAGGTGTTGTGTTG
TAGAGGCAGTTGCAAAAGTCATAATTAAGGAGAATTTGTGCAAGTTCTAA
GACCAGATTTTAAAAGGAGAAAAGCCAAGGGAAATGTTAGCCAGCCAAGT
GAAATAATGTTAGGCATGTTGACGATATCACAAAACTTTTAGATTAATTT
CTTTGTTTAATGGAGGTctgataaatttcttttttaaccaGGGTttagat
gaatttaaaaaagatagagTGTCCTAGATGGATTAGCGAGGCGCTCGAGA
AAATCGCCTTTCAATCTCTCGTAATGAAACGACCACTCCTTTCTTAAAAA
CAAAGTCAAGCAAAGgataatcaaagtcaatcaagcatcaatcgaataca
atcgaatttcaatcgaatGTAATAGAACACCGTTcgcgaaaaagaaaaac
aagcgGTTCATGGGAGTTACCTTATACTAACTTACCAAGTTGCGTAATCA
CACGGTCTAGAAGCGGGTCGTTGAAAAATGCTTAAATATGTATGAAATAT
TTTCCTTCATTGCAAAAGATTGGATGGATGGAATTTTTAACTGGTGGATA
GAATTTTCCATTAATAATTGAAGATtctattaaaagaaaaatgaaagtgc
CGTTCGTTTTAGTCTTTTGCCGATCTcatttcaaagtttaaattttctta
ttttcgcgCGTTTAGCTTGAACcgttctagctcatttgcacagggttgga
aaacccgttgcaaatgcacacccccgtgcaaatgcaaggatttacTAGAC
TAAAAATTGTTAATGTAATAATTGTTGTCTTGTTGCAGTTAGTGTTTCCT
AAACCTGATATTTTTGGGAGCTCCTTCATTCTTTATGgatgtctttttta
tttttttaactttgagaGGATATATCTGTTTTTGGATGGATTCCCTAACT
GATCATGTTGAAATTTTTTAGCCCATTAGTTTcccgtttttgttttttgt
tttccagTTTTTATTTCCAGTTTGTTGTGCTGACATTTTTCATAGcataa
aatttctcataaaaaTTCTCAGGTGAATGGGGGCACCTAACCCAGAGCAA
ATTCTTAAGGGTACCTAAATCATTAGGGGCACCTTATTTTGTTGGGGGCA
CCtaaaaagtgggctgaaaccatgtttTTGGTCAGAAaaacgattttcaa
acttgaaaaaattctctcacAACTTACTTGCGATTCTTACTGAGTTTTAT
ggaagttttatttatttctacagTTTGAACACATCAACAAAATATCAATC
AAAGATAGTTACAAACAACGTCATTTCCTGTAACACCACACTTTTTTCCT
AATGTTTGGTTGAAATTCAATGATAATTGTAAATAGTTGTGTCTTATTTT
AGATTGTGGAATTTTTGAAAGATCGTGGGTATGATGCGGAGACATTGGAA
AAAGTTGAAGAATCAAAGGTTTGTGCTGAATCAATACACCTTCTAACACT
AAATGATTTTAAATATATTGGCATTGGACTTGCAGATGGCAGGCTTTTGA
TTGAGAAATATAGAAGTACACAATTGGCTGAACTGGCAGAACTTGTTTCG
CAAGCTAGAACTCAACCTAAAAAAGACAGTAAACAAGATTCCGTGATGGT
TGAATTTGTTTGGCAGCATTATAACATTAGTCTTGGAAAGTATACCACAG
TGCCTGTTAGTCGTGGTGGAGGTGCCCGCAAAAAATCCTTTAAGCGGTTA
ACAGCtatgaaagaaatatttactATAATAAAGGAGACTTATTTTCCTGG
TGGAGAGAGCAAACACAAAGGCAGTTTACACCTTTTAAAGGCAATGTTAC
ATGCATCAGATCACACACTAATGAATCTTTCATCAACTCTGgatgacttt
ttgaaattaaaaaagatgAAACACAACAAGCTCATTTTGAAAACATCGAA
AGATTGGGACCCTACCAAAGAGATGCAATCTAAAGAAAT Run BLAST on NCBI protein sequence of TCONS_00010169-protein >TCONS_00010169-protein ID=TCONS_00010169-protein|Name=TCONS_00010169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MVEFVWQHYNISLGKYTTVPVSRGGGARKKSFKRLTAMKEIFTIIKETYF
PGGESKHKGSLHLLKAMLHASDHTLMNLSSTLDDFLKLKKMKHNKLILKT
SKDWDPTKEMQSKE Run BLAST on NCBI transcript from alignment at sc0000103:253175..256693+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010169 ID=TCONS_00010169|Name=TCONS_00010169|organism=Clytia hemisphaerica|type=transcript|length=3519bp|location=Sequence derived from alignment at sc0000103:253175..256693+ (Clytia hemisphaerica)
AGAAAAGTAGTGAAAACACGTCATACAGATGTAGACAAATGAtaacaaat
tttacaaactCTATTACACATTTTGTTTCTGCCCATGCTGTCATAAAAAA
GGGATtattaaaccaaaatttgggtaaattgtttgttttagagGGGGGTC
AGGATTAGATAGGGGTGGTCGGGATTAGGCAACCTGACGGTACATGACGT
TGGAATAGTCGTAAAAGTCGTAAAAGTCATAATTACCAATAATTTGCTTG
CGTTCTATCTGGGgaataaatttgtttttaaatatgacTTGAACTATAGA
CTCATTAAATGTGTGAATTTATGGTATAGTGTTTTTTAAGAGCCTTGTGt
gatttgatgaaatttaagTGTTTGCATCGTAATCAATTACGCTAATCGTT
TTCATTTGGACAGTATTGGTAATGAGTCAAcgctatttttaattttggta
atGTTATGGGGACGCTTTTTTGGATGGATTCCCTGACTGTAAGTATGCTG
CATTTTGGTAAGGGTACTCTCCATCATAGACACTAAATGATTgagcaaaa
aattttaaaaatagctctaaaaactttttgcacggtgaaattttttcaaa
ctttcaagaaTAGTAGAAAACTATTATTTGAACAATTCTAACCAGCgcaa
ttttttactttttcttttctttgttctCAACGAAGAACTGAAAACTGATG
TATGGAGTGAGAGAAAAAATGCCTTTGTATGAGCATGAGGTGTTGTGTTG
TAGAGGCAGTTGCAAAAGTCATAATTAAGGAGAATTTGTGCAAGTTCTAA
GACCAGATTTTAAAAGGAGAAAAGCCAAGGGAAATGTTAGCCAGCCAAGT
GAAATAATGTTAGGCATGTTGACGATATCACAAAACTTTTAGATTAATTT
CTTTGTTTAATGGAGGTctgataaatttcttttttaaccaGGGTttagat
gaatttaaaaaagatagagTGTCCTAGATGGATTAGCGAGGCGCTCGAGA
AAATCGCCTTTCAATCTCTCGTAATGAAACGACCACTCCTTTCTTAAAAA
CAAAGTCAAGCAAAGgataatcaaagtcaatcaagcatcaatcgaataca
atcgaatttcaatcgaatGTAATAGAACACCGTTcgcgaaaaagaaaaac
aagcgGTTCATGGGAGTTACCTTATACTAACTTACCAAGTTGCGTAATCA
CACGGTCTAGAAGCGGGTCGTTGAAAAATGCTTAAATATGTATGAAATAT
TTTCCTTCATTGCAAAAGATTGGATGGATGGAATTTTTAACTGGTGGATA
GAATTTTCCATTAATAATTGAAGATtctattaaaagaaaaatgaaagtgc
CGTTCGTTTTAGTCTTTTGCCGATCTcatttcaaagtttaaattttctta
ttttcgcgCGTTTAGCTTGAACcgttctagctcatttgcacagggttgga
aaacccgttgcaaatgcacacccccgtgcaaatgcaaggatttacTAGAC
TAAAAATTGTTAATGTAATAATTGTTGTCTTGTTGCAGTTAGTGTTTCCT
AAACCTGATATTTTTGGGAGCTCCTTCATTCTTTATGgatgtctttttta
tttttttaactttgagaGGATATATCTGTTTTTGGATGGATTCCCTAACT
GATCATGTTGAAATTTTTTAGCCCATTAGTTTcccgtttttgttttttgt
tttccagTTTTTATTTCCAGTTTGTTGTGCTGACATTTTTCATAGcataa
aatttctcataaaaaTTCTCAGGTGAATGGGGGCACCTAACCCAGAGCAA
ATTCTTAAGGGTACCTAAATCATTAGGGGCACCTTATTTTGTTGGGGGCA
CCtaaaaagtgggctgaaaccatgtttTTGGTCAGAAaaacgattttcaa
acttgaaaaaattctctcacAACTTACTTGCGATTCTTACTGAGTTTTAT
ggaagttttatttatttctacagTTTGAACACATCAACAAAATATCAATC
AAAGATAGTTACAAACAACGTCATTTCCTGTAACACCACACTTTTTTCCT
AATGTTTGGTTGAAATTCAATGATAATTGTAAATAGTTGTGTCTTATTTT
AGATTGTGGAATTTTTGAAAGATCGTGGGTATGATGCGGAGACATTGGAA
AAAGTTGAAGAATCAAAGGTAAGAAGGCTTGTTTGAAAATTCGTAAGAAT
AATTTTGAATTCTAAGTTACACCCACCTTCATATGATAGTTCATGCCTTC
CGATCCTAAACTAAGAGTattaataaaaaaagtattCACAAGGAATGTTT
ACATACAAGCTTCAATTCTTAGCAATTAGCTCTGCACATGTATTTAGGAA
AAAGCTACTAGAACACACATGTGGAAAAAGCTGTCATTGACAATGTTAAC
AAAAAATGTGGGAATAAGTTTAATGCAAACTAATTTTGATAAGTTAACCC
CTTTACTACTGTTGACGGGATAAATCATGTTGAAATATATCTTGTAACAA
CATTGATTTTGAAATCGTCATTTTAAGCCAAACTTGCTGGGTTTTCCTTC
CATTGAAAAATAACTTCAAAATTCGGCCTTTTCAGTGAGATTTTGGActt
aatgtcaaaaaaagtgcctaaatttcgcaaaaatcaaCTTTATTGAGATT
TTGACTGCTTTTTGACCATTTCATCAACAAAATAAGGTCAAATTTTTCAG
CCAACCGAAAGTTACAAGCTTCTGATTCCTTCTAGAACCGTAGATGTAAC
TGTTTAAAGCTAGAgctatgaaatttttttgtaagattttaaaAGTGCGT
CCAGTAGCTAAAAGGTTAATTTCTCGAAAAAATAACTATTATTGTGATCA
AAGTTTTCgatttttggggtattttctttggttttactGGGGattctttt
aagaaataaaaaaagttgtttactactaaaaatttgcaaaaattaatacc
ctatgaaaaattggacatTCTATTTAAgaattatataattttttatagGT
TTGTGCTGAATCAATACACCTTCTAACACTAAATGATTTTAAATATATTG
GCATTGGACTTGCAGATGGCAGGCTTTTGATTGAGAAATATAGAAGTACA
CAATTGGCTGAACTGGCAGAACTTGTTTCGCAAGCTAGAACTCAACCTAA
AAAAGACAGTAAACAAGATTCCGTGATGGTTGAATTTGTTTGGCAGCATT
ATAACATTAGTCTTGGAAAGTATACCACAGTGCCTGTTAGTCGTGGTGGA
GGTGCCCGCAAAAAATCCTTTAAGCGGTTAACAGCtatgaaagaaatatt
tactATAATAAAGGAGACTTATTTTCCTGGTGGAGAGAGCAAACACAAAG
GCAGTTTACACCTTTTAAAGGCAATGTTACATGCATCAGATCACACACTA
ATGAATCTTTCATCAACTCTGgatgactttttgaaattaaaaaagatgAA
ACACAACAAGCTCATTTTGAAAACATCGAAAGATTGGGACCCTACCAAAG
AGATGCAATCTAAAGAAAT Coding sequence (CDS) from alignment at sc0000103:253175..256693+ >TCONS_00010169 ID=TCONS_00010169|Name=TCONS_00010169|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0000103:253175..256693+ (Clytia hemisphaerica)
ATGGTTGAATTTGTTTGGCAGCATTATAACATTAGTCTTGGAAAGTATAC
CACAGTGCCTGTTAGTCGTGGTGGAGGTGCCCGCAAAAAATCCTTTAAGC
GGTTAACAGCtatgaaagaaatatttactATAATAAAGGAGACTTATTTT
CCTGGTGGAGAGAGCAAACACAAAGGCAGTTTACACCTTTTAAAGGCAAT
GTTACATGCATCAGATCACACACTAATGAATCTTTCATCAACTCTGgatg
actttttgaaattaaaaaagatgAAACACAACAAGCTCATTTTGAAAACA
TCGAAAGATTGGGACCCTACCAAAGAGATGCAATCTAAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010169-exon-sc0000103-1491911889:253175..255342 | TCONS_00010169-exon-sc0000103-1491911889:253175..255342 | Clytia hemisphaerica | exon |
| TCONS_00010169-exon-sc0000103-1510915933:253175..255342 | TCONS_00010169-exon-sc0000103-1510915933:253175..255342 | Clytia hemisphaerica | exon |
| TCONS_00010169-exon-sc0000103-1575043694:253175..255342 | TCONS_00010169-exon-sc0000103-1575043694:253175..255342 | Clytia hemisphaerica | exon |
| TCONS_00010169-exon-sc0000103-1491911889:256173..256693 | TCONS_00010169-exon-sc0000103-1491911889:256173..256693 | Clytia hemisphaerica | exon |
| TCONS_00010169-exon-sc0000103-1510915933:256173..256693 | TCONS_00010169-exon-sc0000103-1510915933:256173..256693 | Clytia hemisphaerica | exon |
| TCONS_00010169-exon-sc0000103-1575043694:256173..256693 | TCONS_00010169-exon-sc0000103-1575043694:256173..256693 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:253175..256693 + |
Blast
The following BLAST results are available for this feature:
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