TCONS_00010163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010163
Unique NameTCONS_00010163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2144

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010163 ID=TCONS_00010163|Name=TCONS_00010163|organism=Clytia hemisphaerica|type=transcript|length=2144bp
TGGAATTTGCTTAGTTTGATTTAGTTATGGCGTAAAAATGCCGTGTGCCG
AGAACAAATCTAGATTTAGTTATGGCGTGCACAAATCAACAAATcttcct
tgtaaattcattcCCAGTTCCCTAAAAAGCCGACCACACTGCTAAGGGCT
GATGCAGCGCTAAATTCTAGAAATTAACCGTCAGATATGATATTGTCTAG
GGTACCCTAACAAGTGGCGCGTCCCGTACCAAGAAACGTTTTTCAAAAGC
AGGGGGGGTTTATTCGAAATAATACGGTACTTGATTGCGAAAAATGTTAA
CATACCTTCTCTTATTTCAAGTGCATTAGCTGAAGAAGTTGGATGATTGG
TCAACTTGATGTCTGATGTTGTTGTTTTCGCATCTTCAGTTGAATGAGTT
TGAGGGATGTTTGTTGCAGAGTGTTGTTGGATGCTCTGAGATTGTTTCTT
CTGGAAGGTTTGGAGGAACGTTTCAACTCCTTGGATCGTTGCAGATCTAT
ATTGATGTCTGACCTCGTCACGTGACCGTTCTTTGTCTTCGTGTATTGGA
GTTGATGGAGACGGGGCGCTTTGTTGGGGCGGATGTTGGTCCTTACAGCT
TAGTGAATCTTTGTGGGTTAAATGTCCCTGTTTCTCTTGTGTGGTACGGT
TGGTGTACTTCACATTCGATTGTTGCTCTTTACAGTTTAGTGAGTCTTTG
TGGGTATGTCCCTGTTTCTTTTGTGTGGTACAATCAGGGTTCGTAGAACT
CAAGGGTTGCATCGTAGAAGTTTGTGCTTCTTCGTCGAGTAGATCATCGA
TCACGAGAAGGTCATCACTGTCGCTGTCAGCCGAATGATGTTCGATGGCT
TTGAAAAGGGAACCGTGAGAAGATTTATTTGAAGTGAAAGCATCCTTTGT
AGCCAGGAATGATTCAGTGTAAGCATTGTATTGAGCAGAATTTGAGGAAG
GCGACGAGACGGGGTTTCCAGGATGGGTTTTTCCTGCCAGTGTAGAATTA
TTTAGGTATTGATCCGCTTGTCGAGTTGAGCCACTGAGTTGCTTCATTGC
ATCAATAACTTGAATTATTTTAACATCTCTTGAAGAGTCAAGTCTTTTGG
TTGTTGAGGAATCGACATCTTTGCCACGTGAATCATTCAGAGGTGATGAA
GTCCTGTGCGAAAGGTTTGTTATTGATTTAACGTCCTTTATGGTAAAGTT
AACTTCATCCTGATCAGAAAGTGTTGAATGTGGAAATTTCGCAACGGATT
CCACTTTTTCGATTCTCAAATCACAAAGAGTATCCTGATCAGTCAATGTC
GTTTCTGGGAACGATATCTTGATGTCTTGATCTGGAGGAACACGTGTTGA
TTCACAGTCTGGAGCCTGGTAAGAGGTCTCCGGTGTCTCTGGAAGAGAGT
GTTTGGTGATAGCTTCGTTCTGAATTCCAAGTTGTTCTCCATGAAGTTTT
GTAGCGTTTAAGGGATGCAGAGGGATGGAGTTCTTTGTAACAAAGGCTAC
CAAGTTTGGTGTCGATGAATGGTCATTATCGGATATTCCAATGCTATTGA
AAGTTGATGTCACATGAGTTGACGTCACAAGAGATGACGTCACATGAGCT
GAGGTCACATTGCCATGGATACATGTCGTGGTAACTGCTTGAGACTTACT
GCCAATATTGATGCTATCTGAAGTGACAAGGGAAAGCAATTCTGTGTTTG
CAGTTGTTTTGTCTTTGGTTGCCACGATTACAGATGGTCTATTGGTCAAA
TCGGGACGACCAGATATTAGGCTTTTGACCGAGGTTTCAACGATATCTGG
GCTTGGTGTTCGatcatttgaaattttcatttcacttGTAAGGTGACTTT
TTGATGAGGTTTCAAGTGCCATCGAACTGATATTTTCGCTTGAAGGAGGA
TTTCTTGATAAGGGTTCAAGTGACATCGAACTGTTCATTTCGCTTGAAGG
AGGATTTTTTGAAGAAGTTTCAAGTGCTATCGATTTGACGTTTTCAATCT
TGAGATGACAGACCGAATCATGCGCTTCGTTGATGGCTGTCGATGTGAAT
GAGTCTTGAGTTGATGGTGATGCGCACGCCTCTGTTTTTTCAGGAGGTTT
GGACACCACGTGACTTTCTTTTGTTGTAGGAGTGAACCAAACGA
Run BLAST on NCBI

transcript from alignment at sc0000103:93797..96897+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010163 ID=TCONS_00010163|Name=TCONS_00010163|organism=Clytia hemisphaerica|type=transcript|length=3101bp|location=Sequence derived from alignment at sc0000103:93797..96897+ (Clytia hemisphaerica)
TGGAATTTGCTTAGTTTGATTTAGTTATGGCGTAAAAATGCCGTGTGCCG
AGAACAAATCTAGATTTAGTTATGGCGTGCACAAATCAACAAATcttcct
tgtaaattcattcCCAGTTCCCTAAAAAGCCGACCACACTGCTAAGGGCT
GATGCAGCGCTAAATTCTAGAAATTAACCGTCAGATATGATATTGTCTAG
GGTACCCTAACAAGTGGCGCGTCCCGTACCAAGAAACGTTTTTCAAAAGC
AGGGGGGGTTTATTCGAAATAATACGGTACTTGATTGCGAAAAATGTTAA
CATACCTTCTCTTATTTCAAGTGCATTAGCTGAAGAAGTTGGATGATTGG
TCAACTTGATGTCTGATGTTGTTGTTTTCGCATCTTCAGTTGAATGAGTT
TGAGGGATGTTTGTTGCAGAGTGTTGTTGGATGCTCTGAGATTGTTTCTT
CTGGAAGGTTTGGAGGAACGTTTCAACTCCTTGGATCGTTGCAGATCTAT
ATTGATGTCTGACCTCGTCACGTGACCGTTCTTTGTCTTCGTGTATTGGA
GTTGATGGAGACGGGGCGCTTTGTTGGGGCGGATGTTGGTCCTTACAGCT
TAGTGAATCTTTGTGGGTTAAATGTCCCTGTTTCTCTTGTGTGGTACGGT
TGGTGTACTTCACATTCGATTGTTGCTCTTTACAGTTTAGTGAGTCTTTG
TGGGTATGTCCCTGTTTCTTTTGTGTGGTACAATCAGGGTTCGTAGAACT
CAAGGGTTGCATCGTAGAAGTTTGTGCTTCTTCGTCGAGTAGATCATCGA
TCACGAGAAGGTCATCACTGTCGCTGTCAGCCGAATGATGTTCGATGGCT
TTGAAAAGGGAACCGTGAGAAGATTTATTTGAAGTGAAAGCATCCTTTGT
AGCCAGGAATGATTCAGTGTAAGCATTGTATTGAGCAGAATTTGAGGAAG
GCGACGAGACGGGGTTTCCAGGATGGGTTTTTCCTGCCAGTGTAGAATTA
TTTAGGTATTGATCCGCTTGTCGAGTTGAGCCACTGAGTTGCTTCATTGC
ATCAATAACTTGAATTATTTTAACATCTCTTGAAGAGTCAAGTCTTTTGG
TTGTTGAGGAATCGACATCTTTGCCACGTGAATCATTCAGAGGTGATGAA
GTCCTGTGCGAAAGGTTTGTTATTGATTTAACGTCCTTTATGGTAAAGTT
AACTTCATCCTGATCAGAAAGTGTTGAATGTGGAAATTTCGCAACGGATT
CCACTTTTTCGATTCTCAAATCACAAAGAGTATCCTGATCAGTCAATGTC
GTTTCTGGGAACGATATCTTGATGTCTTGATCTGGAGGAACACGTGTTGA
TTCACAGTCTGGAGCCTGGTAAGAGGTCTCCGGTGTCTCTGGAAGAGAGT
GTTTGGTGATAGCTTCGTTCTGAATTCCAAGTTGTTCTCCATGAAGTTTT
GTAGCGTTTAAGGGATGCAGAGGGATGGAGTTCTTTGTAACAAAGGCTAA
CAAGTTTGGTATCGATGAATGGTCATTATCGGATGTTCCAATGCTATTGA
AAGTTGATGTCACATGAGTTGACGTCACAAGAGATGAAGTCACATGAGCT
GAGGTCACATTGCCATGGATACATGTCGTGGTAACTGCTTGAGACTTACT
GCCAATATTGATTCTATCTGAAGTGACAAGGGGAAGCAATTCTGTGTTTA
CAGTTGTTTTGTCTTTGGTTGCCACGATTACAGATGGTCCATTGGTCAAA
TCGGGACGACCAGATATTAGGCTTTTGACCGAGGTTTCAACGATATCTGG
GCTTGGTGTTCGatcatttgaaattttcatttcacttGTAAGGTGACTTT
TTGATGAGGTTTCAAGTGCCATCGAACTGATATTTTCGCTTGAAGGAGGA
TTTCTTGATAAGGGTTCAAGTGACATCGAACTGTTCATTTCGCTTGAAGG
AGGATTTTTTGAAGAAGTTTCAAGTGCTATCGATTTGACGTTTTCAATCT
TGAGATGACAGACCGAATCATGCGCTTCGTTGATGGCTGTCGATGTGAAT
GAGTCTTGAGTTGATGGTGATGCGCACGCCTCTGTTTTTTCAGGAGGTTT
GGACACCACGTGACTTTCTTTTGTTGTAGGAGTGAACCAAACGATACTGA
AAAAAAGAATAGCATATTTGCGTTATATTTTACAAAGTAGTGAAATAATA
GCAATgcgctcttccagaaaatgtccgtacccATGCACGTGGGGTCGGAg
aatatagtgtccgggggtagtgaaaaatctacaaaattttccttgtccGG
GGGATAAATTTTCTCTGTTTTGGGTTAGTTTTGccctgtttgagggtaat
tttgaatgtccaggggtcaactgatgcttgtctgaggggttagacctgct
gtccggggggtcaaaagtcaatttccaagAATGTTATANTTTTGTAACAA
AGGCTACCAAGTTTGGTGTCGATGAATGGTCATTATCGGATATTCCAATG
CTATTGAAAGTTGATGTCACATGAGTTGACGTCACAAGAGATGACGTCAC
ATGAGCTGAGGTCACATTGCCATGGATACATGTCGTGGTAACTGCTTGAG
ACTTACTGCCAATATTGATGCTATCTGAAGTGACAAGGGAAAGCAATTCT
GTGTTTGCAGTTGTTTTGTCTTTGGTTGCCACGATTACAGATGGTCTATT
GGTCAAATCGGGACGACCAGATATTAGGCTTTTGACCGAGGTTTCAACGA
TATCTGGGCTTGGTGTTCGatcatttgaaattttcatttcacttGTAAGG
TGACTTTTTGATGAGGTTTCAAGTGCCATCGAACTGATATTTTCGCTTGA
AGGAGGATTTCTTGATAAGGGTTCAAGTGACATCGAACTGTTCATTTCGC
TTGAAGGAGGATTTTTTGAAGAAGTTTCAAGTGCTATCGATTTGACGTTT
TCAATCTTGAGATGACAGACCGAATCATGCGCTTCGTTGATGGCTGTCGA
TGTGAATGAGTCTTGAGTTGATGGTGATGCGCACGCCTCTGTTTTTTCAG
GAGGTTTGGACACCACGTGACTTTCTTTTGTTGTAGGAGTGAACCAAACG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005705XLOC_005705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010163-exon-sc0000103-1491911889:93797..95291TCONS_00010163-exon-sc0000103-1491911889:93797..95291Clytia hemisphaericaexon
TCONS_00010163-exon-sc0000103-1510915933:93797..95291TCONS_00010163-exon-sc0000103-1510915933:93797..95291Clytia hemisphaericaexon
TCONS_00010163-exon-sc0000103-1575043694:93797..95291TCONS_00010163-exon-sc0000103-1575043694:93797..95291Clytia hemisphaericaexon
TCONS_00010163-exon-sc0000103-1491911889:96249..96897TCONS_00010163-exon-sc0000103-1491911889:96249..96897Clytia hemisphaericaexon
TCONS_00010163-exon-sc0000103-1510915933:96249..96897TCONS_00010163-exon-sc0000103-1510915933:96249..96897Clytia hemisphaericaexon
TCONS_00010163-exon-sc0000103-1575043694:96249..96897TCONS_00010163-exon-sc0000103-1575043694:96249..96897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:93797..96897 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.045345	0.0735536	8.64261e-07	0.281247	1.18597	0.686909	0.248438	0.214583	9.64812e-07	0.114308	0.0962436	0.244071	0.180629	0.105349	0.0829568	8.59299e-07	0.210511	0	0.0573305	1.66464e-09	0.203323	0	0	0.115289	0	0.611592	0	0	0.0915008	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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