TCONS_00010162 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010162
Unique NameTCONS_00010162
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2083

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010162 ID=TCONS_00010162|Name=TCONS_00010162|organism=Clytia hemisphaerica|type=transcript|length=2083bp
GCGAGTTCTCGGTTGCCGGAACTTTCGACAGTGGAAGTCCCTacatcttc
ttcatcaaacaTCAATTCTTCAAGAGATTTACCATTCCAACTGTCACTAT
GTCCAACACCTGATTGGTTTACCAATGACAACAACTCGTTACCCACAGCA
ACCGCAACATGATGACTCTCCACTTTACGTTCTTGGCGACTTTCAACAAC
CAGATCTTCATCATTAGCCGATATGTTCAATCTTTTATTCACCAAATCCT
CTCTTAACTTCTTCTCATCTGCCTCACTTTCCAGCTCCTTGCTTGGTAAA
CTAACAACATTACCATCAGTCGTTTGTTGAGTTTCCCGCTTGACAAAAGC
TAAATTTTCTCCGTCTTTCGATATCTCGCCCATAGTGTTCTCTACGTGAT
CAGAGCTCTCAGTTTCAGCCGTTGGATAAACGTCATTCTTTTTCTTTACG
ATGATCTCTGGAGTTTTTCGATCAATTTTTGAACTCATGACAACATTTGT
TGCTTCAGGTGTTGGAATGCCCTCGCTTTGtttggttgttgttgttatta
ttttccCTGGCTTGTCCATCGTCTTCCCTGGAGTCTTTCGTTCACTTTTC
AAACTCGTGGTCTCAATTGTCGTTGAATTCTCAGATTTTTGAATTCCAGT
CACTGAGGTAGCAGCGTTCTGTTTGATTGCCACCGTCTTCTTTGAAGCCT
GCCGTTCAACGTTAATGCTCTCGACCGTAGGTTTTGTTAATTGGTCAGAC
TTTTGGATTCCAGCCACTGAAGAGACTTCACTTAGCTTTGTTGTCGCCAT
CTTCCCTGGAGCTTCTCTGTCAACAATGATAACAACTTCATCGTCTGAAT
CTTCATCATCAGCATAGTCTTCATCATCATGCTCCAGAGCTTTCAATCTT
GCGTTGTAGTCAATTTTCCCATGATGCATCGCATTCGAAGATGTCTGGTT
ATTGATGGCAGACGCAATGTCCAACACATCGTGATACGATATCATATCTT
CCGAGTCAGAATTAAAACTCTCGTCGGCATATTCGGCGGGATCAACAACT
TCTTGAATCCCAAGGCCTTGACTAAAATCTCGAATATTATGAACTTGAAC
AGTAGTGTTTCCATTGGTTTTCGTTGTTTTGATTTCTTCTGATGAAAAAG
TTCTCAAAATTTTGGAAGATGTATTCTTCTCAGATTCATGATCTTGAAGG
ACGGACGTTTGCTTGTTACGTGAATCTGCTTTGTTCAGTTGATAGATCCT
CTCAGTTTGGTCAGCCAAGTCTTGCATGGAGACCAACAGCTCGACATCGT
GGACAAGCTGACTCAGCAATTGTGAAATCTCTTGTTTTTCTTCGGAGGAG
GTGACCTGCGGTGATTGATTTTCTCTCAATGATGTGGTGACATTTACTGG
TGTCTTCACCCCGGATTCTACCTTCGTGTTCGGAAGGTTTGGTGCACTCG
GCTGAGGTGTGACTTGAGCCTGAAGTCGTTGAATAAGGGAAAGAACAGGA
TTGACTTTCTGTGAATTTGTATCACATTggaaatcgaaatcgaaaggtTC
ATCTTCGTCAATATCTGAATCCTCATCAACCGAAATGTTTAATTCTTCAT
GAGGCTCCGTAGAGGTGAAAAGCTTTTGATTGGAAGCTTCTTCACCTAAA
TGCGTTATTTCTTCATAAGGCGCCATAGAGGCAGAaatcttttgattgga
agatagTCCACTTAAAATCGTCATTTCTTCACCGTGCACCATACCGTTTG
AGAGATTTTGATCGGAAGAAACTTCATCTGAAAGCTCTTGTTCACAAACG
GAGGTATCCAAACTTGTTTCGCTAACAAGTTTGTCACCACGAAGTGTTTC
TACCTCACCAATCTTCTCTTCTTCAATACTTTGTTGGTTGGACATTGTCG
AAGTGATTTTGGATACTTCTTCGTCAAGAACCGACACATATTCGTTAAGT
GCCGATACATTATCCTCGAGAACCGAGTCTTTTTCGTCGAGAACCGATAA
ATTTTCGTCGAGAACCGATAAATTTTCGTCTAAAACTAACACATTTTCGT
CAAGAACCGACACTTCTTCGCCAATAACCGACA
Run BLAST on NCBI

transcript from alignment at sc0000103:81820..84028+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010162 ID=TCONS_00010162|Name=TCONS_00010162|organism=Clytia hemisphaerica|type=transcript|length=2209bp|location=Sequence derived from alignment at sc0000103:81820..84028+ (Clytia hemisphaerica)
GCGAGTTCTCGGTTGCCGGAACTTTCGACAGTGGAAGTCCCTacatcttc
ttcatcaaacaTCAATTCTTCAAGAGATTTACCATTCCAACTGTCACTAT
GTCCAACACCTGATTGGTTTACCAATGACAACAACTCGTTACCCACAGCA
ACCGCAACATGATGACTCTCCACTTTACGTTCTTGGCGACTTTCAACAAC
CAGATCTTCATCATTAGCCGATATGTTCAATCTTTTATTCACCAAATCCT
CTCTTAACTTCTTCTCATCTGCCTCACTTTCCAGCTCCTTGCTTGGTAAA
CTAACAACATTACCATCAGTCGTTTGTTGAGTTTCCCGCTTGACAAAAGC
TAAATTTTCTCCGTCTTTCGATATCTCGCCCATAGTGTTCTCTACGTGAT
CAGAGCTCTCAGTTTCAGCCGTTGGATAAACGTCATTCTTTTTCTTTACG
ATGATCTCTGGAGTTTTTCGATCAATTTTTGAACTCATGACAACATTTGT
TGCTTCAGGTGTTGGAATGCCCTCGCTTTGtttggttgttgttgttatta
ttttccCTGGCTTGTCCATCGTCTTCCCTGGAGTCTTTCGTTCACTTTTC
AAACTCGTGGTCTCAATTGTCGTTGAATTCTCAGATTTTTGAATTCCAGT
CACTGAGGTAGCAGCGTTCTGTTTGATTGCCACCGTCTTCTTTGAAGCCT
GCCGTTCAACGTTAATGCTCTCGACCGTAGGTTTTGTTAATTGGTCAGAC
TTTTGGATTCCAGCCACTGAAGAGACTTCACTTAGCTTTGTTGTCGCCAT
CTTCCCTGGAGCTTCTCTGTCAACAATGATAACAACTTCATCGTCTGAAT
CTTCATCATCAGCATAGTCTTCATCATCATGCTCCAGAGCTTTCAATCTT
GCGTTGTAGTCAATTTTCCCATGATGCATCGCATTCGAAGATGTCTGGTT
ATTGATGGCAGACGCAATGTCCAACACATCGTGATACGATATCATATCTT
CCGAGTCAGAATTAAAACTCTCGTCGGCATATTCGGCGGGATCAACAACT
TCTTGAATCCCAAGGCCTTGACTAAAATCTCGAATATTATGAACTTGAAC
AGTAGTGTTTCCATTGGTTTTCGTTGTTTTGATTTCTTCTGATGAAAAAG
TTCTCAAAATTTTGGAAGATGTATTCTTCTCAGATTCATGATCTTGAAGG
ACGGACGTTTGCTTGTTACGTGAATCTGCTTTGTTCAGTTGATAGATCCT
CTCAGTTTGGTCAGCCAAGTCTTGCATGGAGACCAACAGCTCGACATCGT
GGACAAGCTGACTCAGCAATTGTGAAATCTCTTGTTTTTCTTCGGAGGAG
GTGACCTGCGGTGATTGATTTTCTCTCAATGATGTGGTGACATTTACTGG
TGTCTTCACCCCGGATTCTACCTTCGTGTTCGGAAGGTTTGGTGCACTCG
GCTGAGGTGTGACTTGAGCCTGAAGTCGTTGAATAAGGGAAAGAACAGGA
TTGACTTTCTGTGAATTTGTATCACATTggaaatcgaaatcgaaaggtTC
ATCTTCGTCAATATCTGAATCCTCATCAACCGAAATGTTTAATTCTTCAT
GAGGCTCCGTAGAGGTGAAAAGCTTTTGATTGGAAGCTTCTTCACCTAAA
TGCGTTATTTCTTCATAAGGCGCCATAGAGGCAGAaatcttttgattgga
agatagTCCACTTAAAATCGTCATTTCTTCACCGTGCACCATACCGTTTG
AGAGATTTTGATCGGAAGAAACTTCATCTGAAAGCTCTTGTTCACAAACG
GAGGTATCCAAACTTGTTTCGCTAACAAGTTTGTCACCACGAAGTGTTTC
TACCTCACCAATCTTCTCTTCTTCAATACTTTGTTGGTTGGACATTGTCG
AAGTGATTTTGGATACTTCTTCGTCAAGAACCGACACATATTCGTTAAGT
GCCGATACATTATCCTCGAGAACCGAGTCTTTTTCGTCGAGAACCGATAA
ATTTTCGTCGAGAACCGATAAATTTTCGTCTAAAACTAACACATTTTCGT
CAAGAACCGACACATTTTCGTCAAGCACCGACACTTCTTCGCCAAGCACC
GACACATTTTCGTTGTGCACCAATACATTTTCGTCAAGCACCGATACATT
TTCGTCAAGCACCGATATATCTTCGTCGAGAACCGACACTTCTTCGCCAA
TAACCGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005704XLOC_005704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010162-exon-sc0000103-1491911889:81820..83882TCONS_00010162-exon-sc0000103-1491911889:81820..83882Clytia hemisphaericaexon
TCONS_00010162-exon-sc0000103-1510915933:81820..83882TCONS_00010162-exon-sc0000103-1510915933:81820..83882Clytia hemisphaericaexon
TCONS_00010162-exon-sc0000103-1575043694:81820..83882TCONS_00010162-exon-sc0000103-1575043694:81820..83882Clytia hemisphaericaexon
TCONS_00010162-exon-sc0000103-1491911889:84009..84028TCONS_00010162-exon-sc0000103-1491911889:84009..84028Clytia hemisphaericaexon
TCONS_00010162-exon-sc0000103-1510915933:84009..84028TCONS_00010162-exon-sc0000103-1510915933:84009..84028Clytia hemisphaericaexon
TCONS_00010162-exon-sc0000103-1575043694:84009..84028TCONS_00010162-exon-sc0000103-1575043694:84009..84028Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:81820..84028 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.20778e-05	0	0.0391442	0.109116	0.924086	0	0.17263	0.0448265	0	0.110065	0.417204	0.234839	0.0761994	0.243548	0	0.0307134	0	0.124881	0.105519	0.309378	0.128526	0.379581	0.086514	0	0.66696	0.721001	0.034824	0.076896	0	0.0862474
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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