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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010142 ID=TCONS_00010142|Name=TCONS_00010142|organism=Clytia hemisphaerica|type=transcript|length=1117bp
TAGAAATTGTTGCCATAGAGATTCCCTCGTCAATACCAGATTCTAAAGAT
AAGCGTCTTAACGTAAACGGTCCAATAGAGTTACGCAACCGGTTAATGTT
TCTGATCAAAATGCGTTCATCACGTTCACTCAATTTGCGCGGTCTGCCTC
GGTTGAGTTTACGGCGGTCGAAGGCATGTTTTAATGGACGTTTAACATGG
TGGAATACTGTGGCACGACTGTAGGTAGGAAATTTGAGCATAATCTTTGC
AACGGACATCTTCATCTCCATGTATAAAAATCTCATATAGAGGGAATCTT
CCATTGTCACgcagtttctttcaaaagaaatgtaAATATAATATCTTTTT
GTAAACAAGTAACgacaatataaacaaaacaatgcATAGGAGAAGATCTT
GATAAAGTAAACAAACATAGCTCCTGTCCTGTAAAAAAGAAACCCTTGTT
ATTTTAACCTTCATTCCGTTCGAGCTGGCCTTTGTCGGATGTCCCGTTAA
GAATTATATACATTCCGTAGACTTATAAATAGAATTCTAGAATATATGGT
AGTTATTTTTATCATACTATTATTTATTTTCCATACGTCAAATGTATTTA
TATCTACTTTATGACTTATTTGCTTTCTAAAATAAAAGCTATCCAAGCTA
CTTCGCTATGTTGTTTACTTTAATTTTGTCGGTCTTCCCCTATGACCCGT
TCTTTCGCCTCTTATGAAACACCAGGGCAGGTGGCTGTGGTATTCTTTAA
TGCCCCCACTGCAGGGCTGGACCAGCTTCTTTCCTTTAATGACCGGCTAA
CCTTAATCATAAATATGTCGGTCGAAGATGATGAAATCATAGAAAGTTTT
GAAAAGGTACATAATAACCTGGCCGTACGGTCAAATAGCATCTCCATGCC
ATCTCTCGATTTCGATTCCCGCCTCAAATAAGCAATGGTGGTTAGATTAA
AGCATTACGTGTCCCAAAAACTTATTTATGCAACAGCCCAAAGCATCAAA
ACAAGGTCACAATTGAATATCAATGCACTTTTTCATAGCTGATCAGATGT
GTAAATGTttctttcaaactttaattGCGGCTGACTGAAGATGGGTCAAG
TTACCTACCACCAACCC Run BLAST on NCBI protein sequence of TCONS_00010142-protein >TCONS_00010142-protein ID=TCONS_00010142-protein|Name=TCONS_00010142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MFVYFIKIFSYALFCLYCRYLFTKRYYIYISFERNCVTMEDSLYMRFLYM
EMKMSVAKIMLKFPTYSRATVFHHVKRPLKHAFDRRKLNRGRPRKLSERD
ERILIRNINRLRNSIGPFTLRRLSLESGIDEGISMATIS Run BLAST on NCBI transcript from alignment at sc0000102:529662..530778 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010142 ID=TCONS_00010142|Name=TCONS_00010142|organism=Clytia hemisphaerica|type=transcript|length=1117bp|location=Sequence derived from alignment at sc0000102:529662..530778 (Clytia hemisphaerica)
GGGTTGGTGGTAGGTAACTTGACCCATCTTCAGTCAGCCGCaattaaagt
ttgaaagaaACATTTACACATCTGATCAGCTATGAAAAAGTGCATTGATA
TTCAATTGTGACCTTGTTTTGATGCTTTGGGCTGTTGCATAAATAAGTTT
TTGGGACACGTAATGCTTTAATCTAACCACCATTGCTTATTTGAGGCGGG
AATCGAAATCGAGAGATGGCATGGAGATGCTATTTGACCGTACGGCCAGG
TTATTATGTACCTTTTCAAAACTTTCTATGATTTCATCATCTTCGACCGA
CATATTTATGATTAAGGTTAGCCGGTCATTAAAGGAAAGAAGCTGGTCCA
GCCCTGCAGTGGGGGCATTAAAGAATACCACAGCCACCTGCCCTGGTGTT
TCATAAGAGGCGAAAGAACGGGTCATAGGGGAAGACCGACAAAATTAAAG
TAAACAACATAGCGAAGTAGCTTGGATAGCTTTTATTTTAGAAAGCAAAT
AAGTCATAAAGTAGATATAAATACATTTGACGTATGGAAAATAAATAATA
GTATGATAAAAATAACTACCATATATTCTAGAATTCTATTTATAAGTCTA
CGGAATGTATATAATTCTTAACGGGACATCCGACAAAGGCCAGCTCGAAC
GGAATGAAGGTTAAAATAACAAGGGTTTCTTTTTTACAGGACAGGAGCTA
TGTTTGTTTACTTTATCAAGATCTTCTCCTATgcattgttttgtttatat
tgtcGTTACTTGTTTACAAAAAGATATTATATTtacatttcttttgaaag
aaactgcGTGACAATGGAAGATTCCCTCTATATGAGATTTTTATACATGG
AGATGAAGATGTCCGTTGCAAAGATTATGCTCAAATTTCCTACCTACAGT
CGTGCCACAGTATTCCACCATGTTAAACGTCCATTAAAACATGCCTTCGA
CCGCCGTAAACTCAACCGAGGCAGACCGCGCAAATTGAGTGAACGTGATG
AACGCATTTTGATCAGAAACATTAACCGGTTGCGTAACTCTATTGGACCG
TTTACGTTAAGACGCTTATCTTTAGAATCTGGTATTGACGAGGGAATCTC
TATGGCAACAATTTCTA Coding sequence (CDS) from alignment at sc0000102:529662..530778 >TCONS_00010142 ID=TCONS_00010142|Name=TCONS_00010142|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at sc0000102:529662..530778 (Clytia hemisphaerica)
ATGTTTGTTTACTTTATCAAGATCTTCTCCTATgcattgttttgtttata
ttgtcGTTACTTGTTTACAAAAAGATATTATATTtacatttcttttgaaa
gaaactgcGTGACAATGGAAGATTCCCTCTATATGAGATTTTTATACATG
GAGATGAAGATGTCCGTTGCAAAGATTATGCTCAAATTTCCTACCTACAG
TCGTGCCACAGTATTCCACCATGTTAAACGTCCATTAAAACATGCCTTCG
ACCGCCGTAAACTCAACCGAGGCAGACCGCGCAAATTGAGTGAACGTGAT
GAACGCATTTTGATCAGAAACATTAACCGGTTGCGTAACTCTATTGGACC
GTTTACGTTAAGACGCTTATCTTTAGAATCTGGTATTGACGAGGGAATCT
CTATGGCAACAATTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010142-exon-sc0000102-1491911889:529662..530778 | TCONS_00010142-exon-sc0000102-1491911889:529662..530778 | Clytia hemisphaerica | exon |
| TCONS_00010142-exon-sc0000102-1510915933:529662..530778 | TCONS_00010142-exon-sc0000102-1510915933:529662..530778 | Clytia hemisphaerica | exon |
| TCONS_00010142-exon-sc0000102-1575043694:529662..530778 | TCONS_00010142-exon-sc0000102-1575043694:529662..530778 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:529662..530778 . |
Blast
The following BLAST results are available for this feature:
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