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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010136 ID=TCONS_00010136|Name=TCONS_00010136|organism=Clytia hemisphaerica|type=transcript|length=1967bp
GCATGATCTAGCCTGTGCGTTGATACTGTCAAGTTCTGATTTACTTAGGT
CGACAAGTTCAAGACCATACATCAGTTTAGGGATGATCAGAGTGTTGAAT
AGGGAAACTATTGTGTCAGGGTGGCAATGTCATACACCAGAGGCAATGAG
TGAGGAAGTGCCGACCATAACTCAGCTATTCGTGATGACTTGTGATTTTG
TAGACAGAGTTCATTTCGCTTCTTCGCCCATTGAAAGCCCAGGTGAGATA
ACGTCTCTTGAGGAGTAGCATTGTTGTTTAAGACGAGACTTGGGGAGGGT
AGATTGGACGTTCCTGAGATGACAAATTGGGTTTTCGATTTGGAATTGTT
GAATTTGATGCCGTGTTCACGACCAAAGTTTTCACAGTGGGTGACTAGTG
TCTGTAGGTGTTTTAGTGATGCGCTCAGCAATACATTATCATCGGCATAT
ACAATGATACACGTCTGCAGATCACCAGGTAGTGTGGTACCAATGTTAAG
GGCTTTGACACTCGATATTAGGTCTTCAGTATAGATAATGTAGAAGTAGG
GTGAAAGAATTGCTCCTTGACGGACTCCTGAGNTGTAGTGATTGATTGTC
TCTTGATGTTTGGAACGTTTAACCAGTTTGCGAAAGATTTTGCGAGCAAA
TAAATATCTATTGTAACTCACATCTAAGTTTGATTTTGGAAAACCGTTCT
CTCTCCAGATGTTGAACATACACTTCAGATTCTTGTGAGCGTTCTGTAGT
TCCTCGTTCCACCATGATTTTGGGGTGAAATTGTACTGAGTTCGGTTTTC
AGAAGTATAACAGTCTCTAGCAGAGGTACGCATGATATTGTGAAGTTCAT
GTATCATTGACTCTGTATCAGTCTTGGATGTtgtttcaataagctcagac
aCGCGACTGCGGTAGTCCTTGGTAAATTTGCTATTTTTCCACATAAAGCT
TGGAACAGATTCAGGTTCTTCCGGGTGAGGATCGTTGATAACGTTATGAT
GTGGGCATGATGTTATATTTATTGTGGCATCGACTGGTAGATGGTCTCCA
GTGTTAGTTGCATCAGGTGATAGAACAGATGTATGTAGTACGGTTGAAGA
TAGTGATTGTGGCACCAGGATATGGTCAATGTACGAGCTGTTCGGTAGAG
AAAGATGGTGATAGGTGTAGGTGGGTCCTACACCATGGGTTATGTCAACC
GGTAAGAGATTGTTATCGAATATGAATTTTGATAGGTGGCTGGAGAGTGC
ATTGGATTGGGCTGTTCGTGAGGTAGTCGGTTGATCAGGACAGCATTGAA
AATCTCCAAAGAGTAGAGGGTCAGCAGTATCACTGAATTGTCTGATGATG
CCTGTTATTGAGGCTAACTGAGAGTTGTATGTATCTATGCATTGAGACTG
GCTTGACTGTGAGTTCAATGATTGTAGGTATACCCCTCCAATTAGCAATA
CATTGTTTTTGTAGATAACTTTGACTATTGTGGCATAGTCCTCCTGAATG
ATTGTGCTGGAATTCTCAAATATCGTTTTCCGTAGTAGTAAACACGTTCC
TCCAAACGGACGACCAAATTGGTGACGAGAGGCGGGTTGGTTAATAATAT
GAAAGTCTGTTTTGTAAGAATTGATTATTAAGTGTGATTCACTGTTGGTA
AGCCAAGTTTCTGATAAATAAAGCTTGGAACAGATTCAGGTTCTTCCGGG
TGAGGATCGTTGATAACGTTATGATGTGGGCATGATGGTATATTAGTCTG
ATAAATGTATGATGTCATAGAATTTACTGAGTTTATTGTTGATATAAAGG
TAGTTTGTTTTGTAGCCATTACAATTGAGGGCGACAATGTTGAGATTATG
TTCACTTCCAACCCCAATCATTTGTCATTATGTCATACCAGTTCAGATAA
TTAGGTTTGGAAAGCTCTTCATAAAAATGACGAGGAAAAATCACTGAATT
AAAAAGAGTAACATAGG Run BLAST on NCBI protein sequence of TCONS_00010136-protein >TCONS_00010136-protein ID=TCONS_00010136-protein|Name=TCONS_00010136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
MWKNSKFTKDYRSRVSELIETTSKTDTESMIHELHNIMRTSARDCYTSEN
RTQYNFTPKSWWNEELQNAHKNLKCMFNIWRENGFPKSNLDVSYNRYLFA
RKIFRKLVKRSKHQETINHYXSGVRQGAILSPYFYIIYTEDLISSVKALN
IGTTLPGDLQTCIIVYADDNVLLSASLKHLQTLVTHCENFGREHGIKFNN
SKSKTQFVISGTSNLPSPSLVLNNNATPQETLSHLGFQWAKKRNELCLQN
HKSSRIAELWSALPHSLPLVYDIATLTQ Run BLAST on NCBI transcript from alignment at sc0000102:412125..414091 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010136 ID=TCONS_00010136|Name=TCONS_00010136|organism=Clytia hemisphaerica|type=transcript|length=1967bp|location=Sequence derived from alignment at sc0000102:412125..414091 (Clytia hemisphaerica)
CCTATGTTACTCTTTTTAATTCAGTGATTTTTCCTCGTCATTTTTATGAA
GAGCTTTCCAAACCTAATTATCTGAACTGGTATGACATAATGACAAATGA
TTGGGGTTGGAAGTGAACATAATCTCAACATTGTCGCCCTCAATTGTAAT
GGCTACAAAACAAACTACCTTTATATCAACAATAAACTCAGTAAATTCTA
TGACATCATACATTTATCAGACTAATATACCATCATGCCCACATCATAAC
GTTATCAACGATCCTCACCCGGAAGAACCTGAATCTGTTCCAAGCTTTAT
TTATCAGAAACTTGGCTTACCAACAGTGAATCACACTTAATAATCAATTC
TTACAAAACAGACTTTCATATTATTAACCAACCCGCCTCTCGTCACCAAT
TTGGTCGTCCGTTTGGAGGAACGTGTTTACTACTACGGAAAACGATATTT
GAGAATTCCAGCACAATCATTCAGGAGGACTATGCCACAATAGTCAAAGT
TATCTACAAAAACAATGTATTGCTAATTGGAGGGGTATACCTACAATCAT
TGAACTCACAGTCAAGCCAGTCTCAATGCATAGATACATACAACTCTCAG
TTAGCCTCAATAACAGGCATCATCAGACAATTCAGTGATACTGCTGACCC
TCTACTCTTTGGAGATTTTCAATGCTGTCCTGATCAACCGACTACCTCAC
GAACAGCCCAATCCAATGCACTCTCCAGCCACCTATCAAAATTCATATTC
GATAACAATCTCTTACCGGTTGACATAACCCATGGTGTAGGACCCACCTA
CACCTATCACCATCTTTCTCTACCGAACAGCTCGTACATTGACCATATCC
TGGTGCCACAATCACTATCTTCAACCGTACTACATACATCTGTTCTATCA
CCTGATGCAACTAACACTGGAGACCATCTACCAGTCGATGCCACAATAAA
TATAACATCATGCCCACATCATAACGTTATCAACGATCCTCACCCGGAAG
AACCTGAATCTGTTCCAAGCTTTATGTGGAAAAATAGCAAATTTACCAAG
GACTACCGCAGTCGCGtgtctgagcttattgaaacaACATCCAAGACTGA
TACAGAGTCAATGATACATGAACTTCACAATATCATGCGTACCTCTGCTA
GAGACTGTTATACTTCTGAAAACCGAACTCAGTACAATTTCACCCCAAAA
TCATGGTGGAACGAGGAACTACAGAACGCTCACAAGAATCTGAAGTGTAT
GTTCAACATCTGGAGAGAGAACGGTTTTCCAAAATCAAACTTAGATGTGA
GTTACAATAGATATTTATTTGCTCGCAAAATCTTTCGCAAACTGGTTAAA
CGTTCCAAACATCAAGAGACAATCAATCACTACANCTCAGGAGTCCGTCA
AGGAGCAATTCTTTCACCCTACTTCTACATTATCTATACTGAAGACCTAA
TATCGAGTGTCAAAGCCCTTAACATTGGTACCACACTACCTGGTGATCTG
CAGACGTGTATCATTGTATATGCCGATGATAATGTATTGCTGAGCGCATC
ACTAAAACACCTACAGACACTAGTCACCCACTGTGAAAACTTTGGTCGTG
AACACGGCATCAAATTCAACAATTCCAAATCGAAAACCCAATTTGTCATC
TCAGGAACGTCCAATCTACCCTCCCCAAGTCTCGTCTTAAACAACAATGC
TACTCCTCAAGAGACGTTATCTCACCTGGGCTTTCAATGGGCGAAGAAGC
GAAATGAACTCTGTCTACAAAATCACAAGTCATCACGAATAGCTGAGTTA
TGGTCGGCACTTCCTCACTCATTGCCTCTGGTGTATGACATTGCCACCCT
GACACAATAGTTTCCCTATTCAACACTCTGATCATCCCTAAACTGATGTA
TGGTCTTGAACTTGTCGACCTAAGTAAATCAGAACTTGACAGTATCAACG
CACAGGCTAGATCATGC Coding sequence (CDS) from alignment at sc0000102:412125..414091 >TCONS_00010136 ID=TCONS_00010136|Name=TCONS_00010136|organism=Clytia hemisphaerica|type=CDS|length=837bp|location=Sequence derived from alignment at sc0000102:412125..414091 (Clytia hemisphaerica)
ATGTGGAAAAATAGCAAATTTACCAAGGACTACCGCAGTCGCGtgtctga
gcttattgaaacaACATCCAAGACTGATACAGAGTCAATGATACATGAAC
TTCACAATATCATGCGTACCTCTGCTAGAGACTGTTATACTTCTGAAAAC
CGAACTCAGTACAATTTCACCCCAAAATCATGGTGGAACGAGGAACTACA
GAACGCTCACAAGAATCTGAAGTGTATGTTCAACATCTGGAGAGAGAACG
GTTTTCCAAAATCAAACTTAGATGTGAGTTACAATAGATATTTATTTGCT
CGCAAAATCTTTCGCAAACTGGTTAAACGTTCCAAACATCAAGAGACAAT
CAATCACTACANCTCAGGAGTCCGTCAAGGAGCAATTCTTTCACCCTACT
TCTACATTATCTATACTGAAGACCTAATATCGAGTGTCAAAGCCCTTAAC
ATTGGTACCACACTACCTGGTGATCTGCAGACGTGTATCATTGTATATGC
CGATGATAATGTATTGCTGAGCGCATCACTAAAACACCTACAGACACTAG
TCACCCACTGTGAAAACTTTGGTCGTGAACACGGCATCAAATTCAACAAT
TCCAAATCGAAAACCCAATTTGTCATCTCAGGAACGTCCAATCTACCCTC
CCCAAGTCTCGTCTTAAACAACAATGCTACTCCTCAAGAGACGTTATCTC
ACCTGGGCTTTCAATGGGCGAAGAAGCGAAATGAACTCTGTCTACAAAAT
CACAAGTCATCACGAATAGCTGAGTTATGGTCGGCACTTCCTCACTCATT
GCCTCTGGTGTATGACATTGCCACCCTGACACAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010136-exon-sc0000102-1491911889:412125..414091 | TCONS_00010136-exon-sc0000102-1491911889:412125..414091 | Clytia hemisphaerica | exon |
| TCONS_00010136-exon-sc0000102-1510915933:412125..414091 | TCONS_00010136-exon-sc0000102-1510915933:412125..414091 | Clytia hemisphaerica | exon |
| TCONS_00010136-exon-sc0000102-1575043694:412125..414091 | TCONS_00010136-exon-sc0000102-1575043694:412125..414091 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:412125..414091 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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