TCONS_00010121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010121
Unique NameTCONS_00010121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010121 ID=TCONS_00010121|Name=TCONS_00010121|organism=Clytia hemisphaerica|type=transcript|length=544bp
CTCTTTAGCAATGGgtagagaaaaaaagttttaaggaCAGCGGTATTTAA
GGAAAGGCAATTTATTTAACATTTATAGCAGGTTGCCAGTTCTCACGAAA
GCGCCGTAAGACACCATCTGATACATCAAACtaacacaaaaaaaaagaat
cttcaaaataaattgTTTACTATAAGGattaaaaaacaaagtaaaagaaa
agaaaagagaaaagctGCTGGTTGATActgataataaaaaaaagactGAG
AAATGTCTTCACAAGGTCAATTTTATTCCCATCTGCCAACTTACCAGAAT
GGTTATTTCGCAACCGGTACTGCAACATTATCTCAAGATCCTTCTTCTCA
CCATCACAGTACAACATCGCTAAGAAAATCGCTTGATGTCGATTTTGACT
ACAAACGGAAGATCAGACGTAACGAACCATCATACACGAGAACCCGATCG
GCAGCCAACCTNTACTTATTGattatctttcgttatttttttcgTAATGA
TGTTGCTTGAAGAATAATTAATCTTAAAGAATAATTTTGACGAG
Run BLAST on NCBI

transcript from alignment at sc0000102:80547..81090

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010121 ID=TCONS_00010121|Name=TCONS_00010121|organism=Clytia hemisphaerica|type=transcript|length=544bp|location=Sequence derived from alignment at sc0000102:80547..81090 (Clytia hemisphaerica)
CTCGTCAAAATTATTCTTTAAGATTAATTATTCTTCAAGCAACATCATTA
cgaaaaaaataacgaaagataatCAATAAGTANAGGTTGGCTGCCGATCG
GGTTCTCGTGTATGATGGTTCGTTACGTCTGATCTTCCGTTTGTAGTCAA
AATCGACATCAAGCGATTTTCTTAGCGATGTTGTACTGTGATGGTGAGAA
GAAGGATCTTGAGATAATGTTGCAGTACCGGTTGCGAAATAACCATTCTG
GTAAGTTGGCAGATGGGAATAAAATTGACCTTGTGAAGACATTTCTCagt
cttttttttattatcagTATCAACCAGCagcttttctcttttcttttctt
ttactttgttttttaatCCTTATAGTAAAcaatttattttgaagattctt
tttttttgtgttaGTTTGATGTATCAGATGGTGTCTTACGGCGCTTTCGT
GAGAACTGGCAACCTGCTATAAATGTTAAATAAATTGCCTTTCCTTAAAT
ACCGCTGtccttaaaactttttttctctacCCATTGCTAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005675XLOC_005675Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010121-exon-sc0000102-1491911889:80547..81090TCONS_00010121-exon-sc0000102-1491911889:80547..81090Clytia hemisphaericaexon
TCONS_00010121-exon-sc0000102-1510915933:80547..81090TCONS_00010121-exon-sc0000102-1510915933:80547..81090Clytia hemisphaericaexon
TCONS_00010121-exon-sc0000102-1575043694:80547..81090TCONS_00010121-exon-sc0000102-1575043694:80547..81090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:80547..81090 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.142817	0.677136	46.293	48.3102	6.87171	6.96414	3.75531	5.00772	1.40866	1.53606	0.541221	1.54883	1.66953	3.82987	3.26476	2.70951	3.78857	5.99329	0.971417	0.883159	2.7289	3.14582	0	0.154977	0	0.11976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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