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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010118 ID=TCONS_00010118|Name=TCONS_00010118|organism=Clytia hemisphaerica|type=transcript|length=1336bp
TTAGATGGCAAGTaattatataataaaacatagaAATTTATTAAAACTAA
TAAGACCTTCAAGAATATGTTTGGCATCACAAAATCGTTTAATACACACT
TCGCAGTGTACCTATAATGAGGACACACCAACTCCAGAATCATCAACACC
AGTACAAAACAAACAATTTGCATTGAGTTTTGATGAGTATCAAACATTGA
AGAAATCTTTAAGAAATAAACAAAGAGTTGCTGGCGTTCCTTTTGCTTTT
GCAGCAATCACTGGAAGCTCAATGACCATGGCTTATATGTATCCAGATAT
GTTTGATGCAACTCCTGAAAGTGTCCAATTGGTGATGGGCTTAGATCCAG
TCATGTTTACTGGTTTAACTGGATGTGTGAGTGGTTTAGCTGGATATGTT
TTTGGtgttaatttattcaaattcttttgGGGGGTATTGAACAAAGAGTC
GGCACAGAATTTACATGCTAGAGATACTGATTTTTTGAATCGTTTGGAGA
AGTATAGATTCCAAGAGGATTctaaatttgaagatgattATTATGGTGAA
TCTATCAAGACTTTGAGTGATTACCGACAATGGGTACGCACTCACCAACA
GAagaaaaccacaagtgaaaaatttaaaaagcagGCTGATGAAAAATTGG
CTTAGAGTCTCTGGCAAGACTTCGATTTGCCACAATTTAAAGAGAGAATA
TTATAGTTGTTAACTGAAGTACATTATAATCAcccaaaaaatacattttt
tagatttaggtttttaaaaaggaCATTAGATAGGAACTTTTTGTACAATT
TGGATGGCGTAGACcctatttttagttttgatgatagaatcttctatttt
tattaaaaacaaattttaagcaTGAAATTTGATATGACTGGCTGGCTAAT
AATGTCGAAACTTTTTCTGACATAGGTAAAATTTAAAGTTAAGACGTTCT
CTACGATTTGGATTTAGTTAgtgtaaagttttttttgactGGTCACGCGG
GTTTATAAGCATCGAAGTGTAAAGTTCCACGATCTTTACAATTTTTACTA
GCTGCTCGTCTGAGTCCTTGTGTCCAAAATATCATTTTAGAACAAAAGTT
TATATGGGAAAGGTtacaactttaaaaaaattctgctttGACCTGCTGAA
GTATGATATTATAAATAAATCAGAGATGTCATTGGTTTGTTTAATAAATG
TATTCCTACTGTCTTTGATACATCTGACATATGACGAAACCAGTGGTCAA
ATTTCGATATTCTATTAAAACTTCTTATGTTGTCAAAATCTAAAGTTATG
TGTAGTATTTCATTTACAAAAGTCATAAACAATAGC Run BLAST on NCBI protein sequence of TCONS_00010118-protein >TCONS_00010118-protein ID=TCONS_00010118-protein|Name=TCONS_00010118-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MASNYIIKHRNLLKLIRPSRICLASQNRLIHTSQCTYNEDTPTPESSTPV
QNKQFALSFDEYQTLKKSLRNKQRVAGVPFAFAAITGSSMTMAYMYPDMF
DATPESVQLVMGLDPVMFTGLTGCVSGLAGYVFGVNLFKFFWGVLNKESA
QNLHARDTDFLNRLEKYRFQEDSKFEDDYYGESIKTLSDYRQWVRTHQQK
KTTSEKFKKQADEKLA Run BLAST on NCBI transcript from alignment at sc0000102:62463..63798 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010118 ID=TCONS_00010118|Name=TCONS_00010118|organism=Clytia hemisphaerica|type=transcript|length=1336bp|location=Sequence derived from alignment at sc0000102:62463..63798 (Clytia hemisphaerica)
GCTATTGTTTATGACTTTTGTAAATGAAATACTACACATAACTTTAGATT
TTGACAACATAAGAAGTTTTAATAGAATATCGAAATTTGACCACTGGTTT
CGTCATATGTCAGATGTATCAAAGACAGTAGGAATACATTTATTAAACAA
ACCAATGACATCTCTGATTTATTTATAATATCATACTTCAGCAGGTCaaa
gcagaatttttttaaagttgtaACCTTTCCCATATAAACTTTTGTTCTAA
AATGATATTTTGGACACAAGGACTCAGACGAGCAGCTAGTAAAAATTGTA
AAGATCGTGGAACTTTACACTTCGATGCTTATAAACCCGCGTGACCagtc
aaaaaaaactttacacTAACTAAATCCAAATCGTAGAGAACGTCTTAACT
TTAAATTTTACCTATGTCAGAAAAAGTTTCGACATTATTAGCCAGCCAGT
CATATCAAATTTCAtgcttaaaatttgtttttaataaaaatagaagattc
tatcatcaaaactaaaaataggGTCTACGCCATCCAAATTGTACAAAAAG
TTCCTATCTAATGtcctttttaaaaacctaaatctaaaaaatgtattttt
tgggTGATTATAATGTACTTCAGTTAACAACTATAATATTCTCTCTTTAA
ATTGTGGCAAATCGAAGTCTTGCCAGAGACTCTAAGCCAATTTTTCATCA
GCctgctttttaaatttttcacttgtggttttctTCTGTTGGTGAGTGCG
TACCCATTGTCGGTAATCACTCAAAGTCTTGATAGATTCACCATAATaat
catcttcaaatttagAATCCTCTTGGAATCTATACTTCTCCAAACGATTC
AAAAAATCAGTATCTCTAGCATGTAAATTCTGTGCCGACTCTTTGTTCAA
TACCCCCcaaaagaatttgaataaattaacaCCAAAAACATATCCAGCTA
AACCACTCACACATCCAGTTAAACCAGTAAACATGACTGGATCTAAGCCC
ATCACCAATTGGACACTTTCAGGAGTTGCATCAAACATATCTGGATACAT
ATAAGCCATGGTCATTGAGCTTCCAGTGATTGCTGCAAAAGCAAAAGGAA
CGCCAGCAACTCTTTGTTTATTTCTTAAAGATTTCTTCAATGTTTGATAC
TCATCAAAACTCAATGCAAATTGTTTGTTTTGTACTGGTGTTGATGATTC
TGGAGTTGGTGTGTCCTCATTATAGGTACACTGCGAAGTGTGTATTAAAC
GATTTTGTGATGCCAAACATATTCTTGAAGGTCTTATTAGTTTTAATAAA
TTtctatgttttattatataattACTTGCCATCTAA Coding sequence (CDS) from alignment at sc0000102:62463..63798 >TCONS_00010118 ID=TCONS_00010118|Name=TCONS_00010118|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at sc0000102:62463..63798 (Clytia hemisphaerica)
CTAAGCCAATTTTTCATCAGCctgctttttaaatttttcacttgtggttt
tctTCTGTTGGTGAGTGCGTACCCATTGTCGGTAATCACTCAAAGTCTTG
ATAGATTCACCATAATaatcatcttcaaatttagAATCCTCTTGGAATCT
ATACTTCTCCAAACGATTCAAAAAATCAGTATCTCTAGCATGTAAATTCT
GTGCCGACTCTTTGTTCAATACCCCCcaaaagaatttgaataaattaaca
CCAAAAACATATCCAGCTAAACCACTCACACATCCAGTTAAACCAGTAAA
CATGACTGGATCTAAGCCCATCACCAATTGGACACTTTCAGGAGTTGCAT
CAAACATATCTGGATACATATAAGCCATGGTCATTGAGCTTCCAGTGATT
GCTGCAAAAGCAAAAGGAACGCCAGCAACTCTTTGTTTATTTCTTAAAGA
TTTCTTCAATGTTTGATACTCATCAAAACTCAATGCAAATTGTTTGTTTT
GTACTGGTGTTGATGATTCTGGAGTTGGTGTGTCCTCATTATAGGTACAC
TGCGAAGTGTGTATTAAACGATTTTGTGATGCCAAACATATTCTTGAAGG
TCTTATTAGTTTTAATAAATTtctatgttttattatataattACTTGCCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010118-exon-sc0000102-1491911889:62463..63798 | TCONS_00010118-exon-sc0000102-1491911889:62463..63798 | Clytia hemisphaerica | exon |
| TCONS_00010118-exon-sc0000102-1510915933:62463..63798 | TCONS_00010118-exon-sc0000102-1510915933:62463..63798 | Clytia hemisphaerica | exon |
| TCONS_00010118-exon-sc0000102-1575043694:62463..63798 | TCONS_00010118-exon-sc0000102-1575043694:62463..63798 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:62463..63798 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013875 | Pam17 |
Blast
The following BLAST results are available for this feature:
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